Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:12:25 (2648359): wrapper (7.7.26015): starting
09:12:25 (2648359): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 09:12:25] Arguments: --nthreads 4
[2024-05-19 09:12:25] Threads: 4
[2024-05-19 09:12:25] Checking for CVMFS
[2024-05-19 09:12:25] No cvmfs_config command found, will try listing directly
[2024-05-19 09:12:25] CVMFS is ok
[2024-05-19 09:12:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 09:12:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 09:12:25] Further information can be found at the LHC@home message board.
[2024-05-19 09:12:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 09:12:25] Checking for apptainer binary...
[2024-05-19 09:12:25] which: no apptainer in ((null))
[2024-05-19 09:12:25] apptainer is not installed, using version from CVMFS
[2024-05-19 09:12:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 09:12:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2024-05-19 09:12:26] apptainer works
[2024-05-19 09:12:26] Set ATHENA_PROC_NUMBER=4
[2024-05-19 09:12:26] Set ATHENA_CORE_NUMBER=4
[2024-05-19 09:12:26] Starting ATLAS job with PandaID=6206611750
[2024-05-19 09:12:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 16:24:56]  *** The last 200 lines of the pilot log: ***
[2024-05-19 16:24:56] 2024-05-19 14:23:01,947 | INFO     | current chi2=4.12982496335067 (change=0.004086527322935203 %)
[2024-05-19 16:24:56] 2024-05-19 14:23:01,947 | INFO     | right removable region: 417
[2024-05-19 16:24:56] 2024-05-19 14:23:01,948 | INFO     | model: linear, x: [1716103083.0, 1716103144.0, 1716103205.0, 1716103266.0, 1716103327.0, 1716103388.0, 1716103449.0, 1716103510.0, 1716103571.0, 1716103632.0, 1716
[2024-05-19 16:24:56] 2024-05-19 14:23:01,948 | INFO     | sum of square deviations: 22646692524.5
[2024-05-19 16:24:56] 2024-05-19 14:23:01,950 | INFO     | sum of deviations: 128078403041.50002
[2024-05-19 16:24:56] 2024-05-19 14:23:01,950 | INFO     | mean x: 1716115801.5
[2024-05-19 16:24:56] 2024-05-19 14:23:01,950 | INFO     | mean y: 2343992.8923444976
[2024-05-19 16:24:56] 2024-05-19 14:23:01,950 | INFO     | -- intersect: -9703151458.711424
[2024-05-19 16:24:56] 2024-05-19 14:23:01,951 | INFO     | intersect: -9703151458.711424
[2024-05-19 16:24:56] 2024-05-19 14:23:01,951 | INFO     | chi2: 1.6111475941462101
[2024-05-19 16:24:56] 2024-05-19 14:23:01,951 | INFO     | current chi2=1.6111475941462101 (change=60.989103207598504 %)
[2024-05-19 16:24:56] 2024-05-19 14:23:01,951 | INFO     | model: linear, x: [1716103388.0, 1716103449.0, 1716103510.0, 1716103571.0, 1716103632.0, 1716103693.0, 1716103754.0, 1716103815.0, 1716103876.0, 1716103937.0, 1716
[2024-05-19 16:24:56] 2024-05-19 14:23:01,951 | INFO     | sum of square deviations: 21843691422.0
[2024-05-19 16:24:56] 2024-05-19 14:23:01,954 | INFO     | sum of deviations: 45490975821.99996
[2024-05-19 16:24:56] 2024-05-19 14:23:01,954 | INFO     | mean x: 1716115954.0
[2024-05-19 16:24:56] 2024-05-19 14:23:01,954 | INFO     | mean y: 2359677.104116223
[2024-05-19 16:24:56] 2024-05-19 14:23:01,954 | INFO     | -- intersect: -3571568733.756695
[2024-05-19 16:24:56] 2024-05-19 14:23:01,954 | INFO     | intersect: -3571568733.756695
[2024-05-19 16:24:56] 2024-05-19 14:23:01,954 | INFO     | chi2: 0.08794928987725177
[2024-05-19 16:24:56] 2024-05-19 14:23:01,954 | INFO     | current chi2=0.08794928987725177 (change=94.54120217186815 %)
[2024-05-19 16:24:56] 2024-05-19 14:23:01,955 | INFO     | model: linear, x: [1716103693.0, 1716103754.0, 1716103815.0, 1716103876.0, 1716103937.0, 1716103998.0, 1716104059.0, 1716104120.0, 1716104181.0, 1716104242.0, 1716
[2024-05-19 16:24:56] 2024-05-19 14:23:01,955 | INFO     | sum of square deviations: 21059899982.0
[2024-05-19 16:24:56] 2024-05-19 14:23:01,957 | INFO     | sum of deviations: 28874329687.000008
[2024-05-19 16:24:56] 2024-05-19 14:23:01,957 | INFO     | mean x: 1716116106.5
[2024-05-19 16:24:56] 2024-05-19 14:23:01,958 | INFO     | mean y: 2362901.7696078434
[2024-05-19 16:24:56] 2024-05-19 14:23:01,958 | INFO     | -- intersect: -2350530620.165629
[2024-05-19 16:24:56] 2024-05-19 14:23:01,958 | INFO     | intersect: -2350530620.165629
[2024-05-19 16:24:56] 2024-05-19 14:23:01,958 | INFO     | chi2: 0.014052236445317666
[2024-05-19 16:24:56] 2024-05-19 14:23:01,958 | INFO     | current chi2=0.014052236445317666 (change=84.02234234644764 %)
[2024-05-19 16:24:56] 2024-05-19 14:23:01,959 | INFO     | model: linear, x: [1716103998.0, 1716104059.0, 1716104120.0, 1716104181.0, 1716104242.0, 1716104303.0, 1716104364.0, 1716104425.0, 1716104486.0, 1716104547.0, 1716
[2024-05-19 16:24:56] 2024-05-19 14:23:01,959 | INFO     | sum of square deviations: 20295085642.0
[2024-05-19 16:24:56] 2024-05-19 14:23:01,961 | INFO     | sum of deviations: 22634176331.000004
[2024-05-19 16:24:56] 2024-05-19 14:23:01,961 | INFO     | mean x: 1716116259.0
[2024-05-19 16:24:56] 2024-05-19 14:23:01,961 | INFO     | mean y: 2364140.213399504
[2024-05-19 16:24:56] 2024-05-19 14:23:01,961 | INFO     | -- intersect: -1911541457.224339
[2024-05-19 16:24:56] 2024-05-19 14:23:01,961 | INFO     | intersect: -1911541457.224339
[2024-05-19 16:24:56] 2024-05-19 14:23:01,962 | INFO     | chi2: 0.0023996171828558214
[2024-05-19 16:24:56] 2024-05-19 14:23:01,962 | INFO     | current chi2=0.0023996171828558214 (change=82.92359232501103 %)
[2024-05-19 16:24:56] 2024-05-19 14:23:01,962 | INFO     | model: linear, x: [1716104303.0, 1716104364.0, 1716104425.0, 1716104486.0, 1716104547.0, 1716104608.0, 1716104669.0, 1716104730.0, 1716104791.0, 1716104852.0, 1716
[2024-05-19 16:24:56] 2024-05-19 14:23:01,962 | INFO     | sum of square deviations: 19549015839.5
[2024-05-19 16:24:56] 2024-05-19 14:23:01,965 | INFO     | sum of deviations: 20963635851.499996
[2024-05-19 16:24:56] 2024-05-19 14:23:01,965 | INFO     | mean x: 1716116411.5
[2024-05-19 16:24:56] 2024-05-19 14:23:01,965 | INFO     | mean y: 2364481.5150753767
[2024-05-19 16:24:56] 2024-05-19 14:23:01,965 | INFO     | -- intersect: -1837934785.9691272
[2024-05-19 16:24:56] 2024-05-19 14:23:01,965 | INFO     | intersect: -1837934785.9691272
[2024-05-19 16:24:56] 2024-05-19 14:23:01,965 | INFO     | chi2: 0.0021672575472406635
[2024-05-19 16:24:56] 2024-05-19 14:23:01,965 | INFO     | current chi2=0.0021672575472406635 (change=9.683196022901582 %)
[2024-05-19 16:24:56] 2024-05-19 14:23:01,965 | INFO     | left removable region: 50
[2024-05-19 16:24:56] 2024-05-19 14:23:01,965 | INFO     | model: linear, x: [1716105828.0, 1716105889.0, 1716105950.0, 1716106011.0, 1716106072.0, 1716106133.0, 1716106194.0, 1716106255.0, 1716106316.0, 1716106377.0, 1716
[2024-05-19 16:24:56] 2024-05-19 14:23:01,966 | INFO     | sum of square deviations: 15327572968.0
[2024-05-19 16:24:56] 2024-05-19 14:23:01,968 | INFO     | sum of deviations: 16369120639.999998
[2024-05-19 16:24:56] 2024-05-19 14:23:01,968 | INFO     | mean x: 1716116991.0
[2024-05-19 16:24:56] 2024-05-19 14:23:01,968 | INFO     | mean y: 2365273.555858311
[2024-05-19 16:24:56] 2024-05-19 14:23:01,968 | INFO     | -- intersect: -1830366243.4742806
[2024-05-19 16:24:56] 2024-05-19 14:23:01,968 | INFO     | intersect: -1830366243.4742806
[2024-05-19 16:24:56] 2024-05-19 14:23:01,968 | INFO     | chi2: 0.002027599302296
[2024-05-19 16:24:56] 2024-05-19 14:23:01,968 | INFO     | -- intersect: -1830366243.4742806
[2024-05-19 16:24:56] 2024-05-19 14:23:01,968 | INFO     | current memory leak: 1.07 B/s (using 367 data points, chi2=0.00)
[2024-05-19 16:24:56] 2024-05-19 14:23:01,969 | INFO     | ..............................
[2024-05-19 16:24:56] 2024-05-19 14:23:01,969 | INFO     | . Timing measurements:
[2024-05-19 16:24:56] 2024-05-19 14:23:01,969 | INFO     | . get job = 0 s
[2024-05-19 16:24:56] 2024-05-19 14:23:01,969 | INFO     | . initial setup = 1 s
[2024-05-19 16:24:56] 2024-05-19 14:23:01,969 | INFO     | . payload setup = 4 s
[2024-05-19 16:24:56] 2024-05-19 14:23:01,969 | INFO     | . stage-in = 0 s
[2024-05-19 16:24:56] 2024-05-19 14:23:01,969 | INFO     | . payload execution = 25794 s
[2024-05-19 16:24:56] 2024-05-19 14:23:01,969 | INFO     | . stage-out = 1 s
[2024-05-19 16:24:56] 2024-05-19 14:23:01,969 | INFO     | . log creation = 0 s
[2024-05-19 16:24:56] 2024-05-19 14:23:01,969 | INFO     | ..............................
[2024-05-19 16:24:56] 2024-05-19 14:23:02,027 | INFO     | 
[2024-05-19 16:24:56] 2024-05-19 14:23:02,027 | INFO     | job summary report
[2024-05-19 16:24:56] 2024-05-19 14:23:02,027 | INFO     | --------------------------------------------------
[2024-05-19 16:24:56] 2024-05-19 14:23:02,027 | INFO     | PanDA job id: 6206611750
[2024-05-19 16:24:56] 2024-05-19 14:23:02,027 | INFO     | task id: 38920995
[2024-05-19 16:24:56] 2024-05-19 14:23:02,027 | INFO     | errors: (none)
[2024-05-19 16:24:56] 2024-05-19 14:23:02,028 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 16:24:56] 2024-05-19 14:23:02,028 | INFO     | pilot state: finished 
[2024-05-19 16:24:56] 2024-05-19 14:23:02,028 | INFO     | transexitcode: 0
[2024-05-19 16:24:56] 2024-05-19 14:23:02,028 | INFO     | exeerrorcode: 0
[2024-05-19 16:24:56] 2024-05-19 14:23:02,028 | INFO     | exeerrordiag: 
[2024-05-19 16:24:56] 2024-05-19 14:23:02,028 | INFO     | exitcode: 0
[2024-05-19 16:24:56] 2024-05-19 14:23:02,028 | INFO     | exitmsg: OK
[2024-05-19 16:24:56] 2024-05-19 14:23:02,028 | INFO     | cpuconsumptiontime: 99987 s
[2024-05-19 16:24:56] 2024-05-19 14:23:02,028 | INFO     | nevents: 400
[2024-05-19 16:24:56] 2024-05-19 14:23:02,029 | INFO     | neventsw: 0
[2024-05-19 16:24:56] 2024-05-19 14:23:02,029 | INFO     | pid: 2660080
[2024-05-19 16:24:56] 2024-05-19 14:23:02,029 | INFO     | pgrp: 2660080
[2024-05-19 16:24:56] 2024-05-19 14:23:02,029 | INFO     | corecount: 4
[2024-05-19 16:24:56] 2024-05-19 14:23:02,029 | INFO     | event service: False
[2024-05-19 16:24:56] 2024-05-19 14:23:02,029 | INFO     | sizes: {0: 2392134, 4: 2392340, 11: 2392368, 25801: 2428404, 25803: 2437386, 25806: 2437442, 25813: 2437740}
[2024-05-19 16:24:56] 2024-05-19 14:23:02,029 | INFO     | --------------------------------------------------
[2024-05-19 16:24:56] 2024-05-19 14:23:02,029 | INFO     | 
[2024-05-19 16:24:56] 2024-05-19 14:23:02,029 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2024-05-19 16:24:56] 2024-05-19 14:23:02,053 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,053 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,053 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 16:24:56] 2024-05-19 14:23:02,054 | INFO     | job 6206611750 has completed (purged errors)
[2024-05-19 16:24:56] 2024-05-19 14:23:02,055 | INFO     | overall cleanup function is called
[2024-05-19 16:24:56] 2024-05-19 14:23:03,062 | INFO     | --- collectZombieJob: --- 10, [2660080]
[2024-05-19 16:24:56] 2024-05-19 14:23:03,062 | INFO     | zombie collector waiting for pid 2660080
[2024-05-19 16:24:56] 2024-05-19 14:23:03,063 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 16:24:56] 2024-05-19 14:23:04,068 | INFO     | collected zombie processes
[2024-05-19 16:24:56] 2024-05-19 14:23:04,069 | INFO     | will now attempt to kill all subprocesses of pid=2660080
[2024-05-19 16:24:56] 2024-05-19 14:23:04,233 | INFO     | process IDs to be killed: [2660080] (in reverse order)
[2024-05-19 16:24:56] 2024-05-19 14:23:04,346 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 16:24:56] 2024-05-19 14:23:04,346 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 16:24:56] 2024-05-19 14:23:04,357 | INFO     | did not find any defunct processes belonging to 2660080
[2024-05-19 16:24:56] 2024-05-19 14:23:04,367 | INFO     | did not find any defunct processes belonging to 2660080
[2024-05-19 16:24:56] 2024-05-19 14:23:04,368 | INFO     | ready for new job
[2024-05-19 16:24:56] 2024-05-19 14:23:04,368 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 16:24:56] 2024-05-19 14:23:04,371 | INFO     | *************************************
[2024-05-19 16:24:56] 2024-05-19 14:23:04,371 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 16:24:56] 2024-05-19 14:23:04,371 | INFO     | *************************************
[2024-05-19 16:24:56] 2024-05-19 14:23:04,371 | INFO     | 
[2024-05-19 16:24:56] 2024-05-19 14:23:04,375 | INFO     | architecture information:
[2024-05-19 16:24:56] 2024-05-19 14:23:04,376 | INFO     | executing command: cat /etc/os-release
[2024-05-19 16:24:56] 2024-05-19 14:23:04,391 | INFO     | cat /etc/os-release:
[2024-05-19 16:24:56] NAME="CentOS Linux"
[2024-05-19 16:24:56] VERSION="7 (Core)"
[2024-05-19 16:24:56] ID="centos"
[2024-05-19 16:24:56] ID_LIKE="rhel fedora"
[2024-05-19 16:24:56] VERSION_ID="7"
[2024-05-19 16:24:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 16:24:56] ANSI_COLOR="0;31"
[2024-05-19 16:24:56] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 16:24:56] HOME_URL="https://www.centos.org/"
[2024-05-19 16:24:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 16:24:56] 
[2024-05-19 16:24:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 16:24:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 16:24:56] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 16:24:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 16:24:56] 
[2024-05-19 16:24:56] 2024-05-19 14:23:04,391 | INFO     | *************************************
[2024-05-19 16:24:56] 2024-05-19 14:23:04,894 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2024-05-19 16:24:56] 2024-05-19 14:23:04,926 | INFO     | sufficient remaining disk space (572758425600 B)
[2024-05-19 16:24:56] 2024-05-19 14:23:04,927 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 16:24:56] 2024-05-19 14:23:04,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 16:24:56] 2024-05-19 14:23:04,927 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 16:24:56] 2024-05-19 14:23:04,928 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-19 16:24:56] 2024-05-19 14:23:04,928 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 16:24:56] 2024-05-19 14:23:04,928 | INFO     | aborting loop
[2024-05-19 16:24:56] 2024-05-19 14:23:04,929 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 16:24:56] 2024-05-19 14:23:04,929 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 16:24:56] 2024-05-19 14:23:04,929 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 16:24:56] 2024-05-19 14:23:05,520 | INFO     | all job control threads have been joined
[2024-05-19 16:24:56] 2024-05-19 14:23:05,746 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 16:24:56] 2024-05-19 14:23:05,933 | INFO     | [job] retrieve thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:05,934 | INFO     | [job] job monitor thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:05,960 | INFO     | [payload] validate_post thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:05,960 | INFO     | all data control threads have been joined
[2024-05-19 16:24:56] 2024-05-19 14:23:05,979 | INFO     | all payload control threads have been joined
[2024-05-19 16:24:56] 2024-05-19 14:23:06,207 | INFO     | [data] copytool_in thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:06,322 | INFO     | [job] validate thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:06,371 | INFO     | [payload] failed_post thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:06,456 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:06,472 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:06,522 | INFO     | [job] control thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:06,935 | INFO     | [data] copytool_out thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:06,964 | INFO     | [data] control thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:06,985 | INFO     | [payload] control thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:07,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 16:24:56] 2024-05-19 14:23:07,125 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:08,043 | INFO     | [job] queue monitor thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:09,752 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:14,982 | INFO     | job.realtimelogging is not enabled
[2024-05-19 16:24:56] 2024-05-19 14:23:15,988 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 16:24:56] 2024-05-19 14:23:17,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47827504223296)>', '<ExcThread(monitor, started 47828290246400)>']
[2024-05-19 16:24:56] 2024-05-19 14:23:17,979 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 16:24:56] 2024-05-19 14:23:17,979 | INFO     | [monitor] control thread has ended
[2024-05-19 16:24:56] 2024-05-19 14:23:22,340 | INFO     | all workflow threads have been joined
[2024-05-19 16:24:56] 2024-05-19 14:23:22,341 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 16:24:56] 2024-05-19 14:23:22,341 | INFO     | traces error code: 0
[2024-05-19 16:24:56] 2024-05-19 14:23:22,342 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 16:24:56] 2024-05-19 14:23:22,451 [wrapper] ==== pilot stdout END ====
[2024-05-19 16:24:56] 2024-05-19 14:23:22,455 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 16:24:56] 2024-05-19 14:23:22,457 [wrapper] pilotpid: 2652728
[2024-05-19 16:24:56] 2024-05-19 14:23:22,461 [wrapper] Pilot exit status: 0
[2024-05-19 16:24:56] 2024-05-19 14:23:22,471 [wrapper] pandaids: 6206611750
[2024-05-19 16:24:56] 2024-05-19 14:23:22,540 [wrapper] cleanup: SIGTERM to supervisor_pilot 3653076 2652729
[2024-05-19 16:24:56] 2024-05-19 14:23:22,542 [wrapper] Test setup, not cleaning
[2024-05-19 16:24:56] 2024-05-19 14:23:22,545 [wrapper] ==== wrapper stdout END ====
[2024-05-19 16:24:56] 2024-05-19 14:23:22,549 [wrapper] ==== wrapper stderr END ====
[2024-05-19 16:24:56] 2024-05-19 14:23:22,555 [wrapper] apfmon messages muted
[2024-05-19 16:24:56]  *** Error codes and diagnostics ***
[2024-05-19 16:24:56]     "exeErrorCode": 0,
[2024-05-19 16:24:56]     "exeErrorDiag": "",
[2024-05-19 16:24:56]     "pilotErrorCode": 0,
[2024-05-19 16:24:56]     "pilotErrorDiag": "",
[2024-05-19 16:24:56]  *** Listing of results directory ***
[2024-05-19 16:24:56] total 1243372
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc    467845 May 15 10:53 pilot3.tar.gz
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc      5633 May 15 11:07 queuedata.json
[2024-05-19 16:24:56] -rwx------ 1 boinc boinc     32251 May 15 11:09 runpilot2-wrapper.sh
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc       100 May 19 04:29 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 16:24:56] -rwxr-xr-x 1 boinc boinc      7986 May 19 04:29 run_atlas
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc       105 May 19 04:29 job.xml
[2024-05-19 16:24:56] -rw------- 2 boinc boinc 279117824 May 19 04:58 copy_OZBDcE
[2024-05-19 16:24:56] -rw-r--r-- 2 boinc boinc 634073203 May 19 09:12 EVNT.38776180._000142.pool.root.1
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc      6663 May 19 09:12 init_data.xml
[2024-05-19 16:24:56] -rw-r--r-- 2 boinc boinc     17537 May 19 09:12 start_atlas.sh
[2024-05-19 16:24:56] drwxrwx--x 2 boinc boinc      4096 May 19 09:12 shared
[2024-05-19 16:24:56] -rw-r--r-- 2 boinc boinc    480004 May 19 09:12 input.tar.gz
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc         0 May 19 09:12 boinc_lockfile
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc      2612 May 19 09:12 pandaJob.out
[2024-05-19 16:24:56] -rw------- 1 boinc boinc       424 May 19 09:12 setup.sh.local
[2024-05-19 16:24:56] -rw------- 1 boinc boinc   1013987 May 19 09:12 agis_schedconf.cvmfs.json
[2024-05-19 16:24:56] -rw------- 1 boinc boinc   1324701 May 19 09:12 cric_ddmendpoints.json
[2024-05-19 16:24:56] drwx------ 4 boinc boinc      4096 May 19 09:12 pilot3
[2024-05-19 16:24:56] -rw------- 1 boinc boinc 349358045 May 19 16:22 HITS.38920995._003530.pool.root.1
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc       531 May 19 16:22 boinc_task_state.xml
[2024-05-19 16:24:56] -rw------- 1 boinc boinc        95 May 19 16:22 pilot_heartbeat.json
[2024-05-19 16:24:56] -rw------- 1 boinc boinc      1065 May 19 16:22 memory_monitor_summary.json
[2024-05-19 16:24:56] -rw------- 1 boinc boinc         0 May 19 16:22 agis_ddmendpoints.agis.ALL.json
[2024-05-19 16:24:56] -rw------- 1 boinc boinc    471964 May 19 16:22 log.38920995._003530.job.log.tgz.1
[2024-05-19 16:24:56] -rw------- 1 boinc boinc      7769 May 19 16:23 heartbeat.json
[2024-05-19 16:24:56] -rw------- 1 boinc boinc      4416 May 19 16:23 pilotlog.txt
[2024-05-19 16:24:56] -rw------- 1 boinc boinc   3088587 May 19 16:23 log.38920995._003530.job.log.1
[2024-05-19 16:24:56] -rw------- 1 boinc boinc       357 May 19 16:23 output.list
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc       620 May 19 16:23 runtime_log
[2024-05-19 16:24:56] -rw------- 1 boinc boinc   3584000 May 19 16:23 result.tar.gz
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc     11410 May 19 16:23 runtime_log.err
[2024-05-19 16:24:56] -rw------- 1 boinc boinc       659 May 19 16:23 HpyKDmboPR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmu5NKDmhPaTTo.diag
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc        28 May 19 16:24 wrapper_checkpoint.txt
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc      8192 May 19 16:24 boinc_mmap_file
[2024-05-19 16:24:56] -rw-r--r-- 1 boinc boinc     21420 May 19 16:24 stderr.txt
[2024-05-19 16:24:56] HITS file was successfully produced:
[2024-05-19 16:24:56] -rw------- 1 boinc boinc 349358045 May 19 16:22 shared/HITS.pool.root.1
[2024-05-19 16:24:56]  *** Contents of shared directory: ***
[2024-05-19 16:24:56] total 1236968
[2024-05-19 16:24:56] -rw------- 2 boinc boinc 279117824 May 19 04:58 copy_OZBDcE
[2024-05-19 16:24:56] -rw-r--r-- 2 boinc boinc 634073203 May 19 09:12 ATLAS.root_0
[2024-05-19 16:24:56] -rw-r--r-- 2 boinc boinc     17537 May 19 09:12 start_atlas.sh
[2024-05-19 16:24:56] -rw-r--r-- 2 boinc boinc    480004 May 19 09:12 input.tar.gz
[2024-05-19 16:24:56] -rw------- 1 boinc boinc 349358045 May 19 16:22 HITS.pool.root.1
[2024-05-19 16:24:56] -rw------- 1 boinc boinc   3584000 May 19 16:23 result.tar.gz
16:24:58 (2648359): run_atlas exited; CPU time 99430.565933
16:24:58 (2648359): called boinc_finish(0)

</stderr_txt>
]]>

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