Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:12:19 (72609): wrapper (7.7.26015): starting
09:12:19 (72609): wrapper: running run_atlas (--nthreads 8)
[2024-05-15 09:12:19] Arguments: --nthreads 8
[2024-05-15 09:12:19] Threads: 8
[2024-05-15 09:12:19] Checking for CVMFS
[2024-05-15 09:12:20] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-15 09:12:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-15 09:12:20] Running cvmfs_config stat atlas.cern.ch
[2024-05-15 09:12:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-15 09:12:20] 2.11.2.0 159478 5078 102880 132760 1 264 18190375 18432001 14983 130560 0 30319014 98.914 62026535 38815 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-05-15 09:12:20] CVMFS is ok
[2024-05-15 09:12:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 09:12:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 09:12:20] Further information can be found at the LHC@home message board.
[2024-05-15 09:12:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 09:12:20] Checking for apptainer binary...
[2024-05-15 09:12:20] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-15 09:12:20] Running /usr/bin/apptainer --version
[2024-05-15 09:12:24] apptainer version 1.3.0-1.el7
[2024-05-15 09:12:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 09:12:44] c6-4-5-2.aglt2.org
[2024-05-15 09:12:44] apptainer works
[2024-05-15 09:12:44] Set ATHENA_PROC_NUMBER=8
[2024-05-15 09:12:44] Set ATHENA_CORE_NUMBER=8
[2024-05-15 09:12:44] Starting ATLAS job with PandaID=6206611712
[2024-05-15 09:12:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 21:06:45]  *** The last 200 lines of the pilot log: ***
[2024-05-15 21:06:45] 2024-05-16 01:06:00,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 21:06:45] 2024-05-16 01:06:03,256 | INFO     | monitor loop #2860: job 0:6206611712 is in state 'finished'
[2024-05-15 21:06:45] 2024-05-16 01:06:03,257 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 21:06:45] 2024-05-16 01:06:05,763 | INFO     | monitor loop #2861: job 0:6206611712 is in state 'finished'
[2024-05-15 21:06:45] 2024-05-16 01:06:05,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 21:06:45] 2024-05-16 01:06:08,290 | INFO     | monitor loop #2862: job 0:6206611712 is in state 'finished'
[2024-05-15 21:06:45] 2024-05-16 01:06:08,291 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 21:06:45] 2024-05-16 01:06:10,796 | INFO     | monitor loop #2863: job 0:6206611712 is in state 'finished'
[2024-05-15 21:06:45] 2024-05-16 01:06:10,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 21:06:45] 2024-05-16 01:06:13,301 | INFO     | monitor loop #2864: job 0:6206611712 is in state 'finished'
[2024-05-15 21:06:45] 2024-05-16 01:06:13,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 21:06:45] 2024-05-16 01:06:14,519 | INFO     | 42759s have passed since pilot start
[2024-05-15 21:06:45] 2024-05-16 01:06:15,871 | INFO     | monitor loop #2865: job 0:6206611712 is in state 'finished'
[2024-05-15 21:06:45] 2024-05-16 01:06:15,872 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 21:06:45] 2024-05-16 01:06:17,757 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-15 21:06:45] 2024-05-16 01:06:17,757 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6206611712/memory_monitor_summary.json (trf name=prmon)
[2024-05-15 21:06:45] 2024-05-16 01:06:17,758 | INFO     | extracted standard info from prmon json
[2024-05-15 21:06:45] 2024-05-16 01:06:17,758 | INFO     | extracted standard memory fields from prmon json
[2024-05-15 21:06:45] 2024-05-16 01:06:17,758 | WARNING  | GPU info not found in prmon json
[2024-05-15 21:06:45] 2024-05-16 01:06:17,758 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-15 21:06:45] 2024-05-16 01:06:17,758 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-15 21:06:45] 2024-05-16 01:06:17,791 | INFO     | fitting pss+swap vs Time
[2024-05-15 21:06:45] 2024-05-16 01:06:17,792 | INFO     | model: linear, x: [1715778977.0, 1715779038.0, 1715779099.0, 1715779160.0, 1715779221.0, 1715779282.0, 1715779343.0, 1715779404.0, 1715779465.0, 1715779526.0, 1715
[2024-05-15 21:06:45] 2024-05-16 01:06:17,792 | INFO     | sum of square deviations: 104997451143.06161
[2024-05-15 21:06:45] 2024-05-16 01:06:17,826 | INFO     | sum of deviations: 1462090915302.5312
[2024-05-15 21:06:45] 2024-05-16 01:06:17,826 | INFO     | mean x: 1715800205.251076
[2024-05-15 21:06:45] 2024-05-16 01:06:17,826 | INFO     | mean y: 2441371.294117647
[2024-05-15 21:06:45] 2024-05-16 01:06:17,826 | INFO     | -- intersect: -23890099497.66194
[2024-05-15 21:06:45] 2024-05-16 01:06:17,827 | INFO     | intersect: -23890099497.66194
[2024-05-15 21:06:45] 2024-05-16 01:06:17,827 | INFO     | chi2: 19.033796642276386
[2024-05-15 21:06:45] 2024-05-16 01:06:17,828 | INFO     | model: linear, x: [1715778977.0, 1715779038.0, 1715779099.0, 1715779160.0, 1715779221.0, 1715779282.0, 1715779343.0, 1715779404.0, 1715779465.0, 1715779526.0, 1715
[2024-05-15 21:06:45] 2024-05-16 01:06:17,828 | INFO     | sum of square deviations: 102754057802.7443
[2024-05-15 21:06:45] 2024-05-16 01:06:17,862 | INFO     | sum of deviations: 1593656587233.1501
[2024-05-15 21:06:45] 2024-05-16 01:06:17,862 | INFO     | mean x: 1715800052.75289
[2024-05-15 21:06:45] 2024-05-16 01:06:17,862 | INFO     | mean y: 2450286.5505780345
[2024-05-15 21:06:45] 2024-05-16 01:06:17,862 | INFO     | -- intersect: -26608625858.91724
[2024-05-15 21:06:45] 2024-05-16 01:06:17,863 | INFO     | intersect: -26608625858.91724
[2024-05-15 21:06:45] 2024-05-16 01:06:17,863 | INFO     | chi2: 16.728616755249284
[2024-05-15 21:06:45] 2024-05-16 01:06:17,863 | INFO     | current chi2=16.728616755249284 (change=12.11098306003236 %)
[2024-05-15 21:06:45] 2024-05-16 01:06:17,863 | INFO     | right removable region: 691
[2024-05-15 21:06:45] 2024-05-16 01:06:17,864 | INFO     | model: linear, x: [1715779282.0, 1715779343.0, 1715779404.0, 1715779465.0, 1715779526.0, 1715779587.0, 1715779648.0, 1715779709.0, 1715779770.0, 1715779831.0, 1715
[2024-05-15 21:06:45] 2024-05-16 01:06:17,864 | INFO     | sum of square deviations: 102753951052.74419
[2024-05-15 21:06:45] 2024-05-16 01:06:17,898 | INFO     | sum of deviations: 1226308936179.6455
[2024-05-15 21:06:45] 2024-05-16 01:06:17,899 | INFO     | mean x: 1715800357.75289
[2024-05-15 21:06:45] 2024-05-16 01:06:17,899 | INFO     | mean y: 2457393.302023121
[2024-05-15 21:06:45] 2024-05-16 01:06:17,899 | INFO     | -- intersect: -20474626843.902195
[2024-05-15 21:06:45] 2024-05-16 01:06:17,899 | INFO     | intersect: -20474626843.902195
[2024-05-15 21:06:45] 2024-05-16 01:06:17,900 | INFO     | chi2: 14.519453079204489
[2024-05-15 21:06:45] 2024-05-16 01:06:17,900 | INFO     | current chi2=14.519453079204489 (change=23.717514944154594 %)
[2024-05-15 21:06:45] 2024-05-16 01:06:17,900 | INFO     | left removable region: 10
[2024-05-15 21:06:45] 2024-05-16 01:06:17,900 | INFO     | model: linear, x: [1715779587.0, 1715779648.0, 1715779709.0, 1715779770.0, 1715779831.0, 1715779892.0, 1715779953.0, 1715780014.0, 1715780075.0, 1715780136.0, 1715
[2024-05-15 21:06:45] 2024-05-16 01:06:17,901 | INFO     | sum of square deviations: 97931348514.02933
[2024-05-15 21:06:45] 2024-05-16 01:06:17,920 | INFO     | sum of deviations: 1178886995057.4878
[2024-05-15 21:06:45] 2024-05-16 01:06:17,920 | INFO     | mean x: 1715800327.256975
[2024-05-15 21:06:45] 2024-05-16 01:06:17,920 | INFO     | mean y: 2478770.2657856094
[2024-05-15 21:06:45] 2024-05-16 01:06:17,920 | INFO     | -- intersect: -20652140231.828922
[2024-05-15 21:06:45] 2024-05-16 01:06:17,920 | INFO     | intersect: -20652140231.828922
[2024-05-15 21:06:45] 2024-05-16 01:06:17,921 | INFO     | chi2: 9.743373145275068
[2024-05-15 21:06:45] 2024-05-16 01:06:17,921 | INFO     | -- intersect: -20652140231.828922
[2024-05-15 21:06:45] 2024-05-16 01:06:17,921 | INFO     | current memory leak: 12.04 B/s (using 681 data points, chi2=9.74)
[2024-05-15 21:06:45] 2024-05-16 01:06:17,922 | INFO     | ..............................
[2024-05-15 21:06:45] 2024-05-16 01:06:17,926 | INFO     | . Timing measurements:
[2024-05-15 21:06:45] 2024-05-16 01:06:17,927 | INFO     | . get job = 0 s
[2024-05-15 21:06:45] 2024-05-16 01:06:17,927 | INFO     | . initial setup = 3 s
[2024-05-15 21:06:45] 2024-05-16 01:06:17,927 | INFO     | . payload setup = 65 s
[2024-05-15 21:06:45] 2024-05-16 01:06:17,927 | INFO     | . stage-in = 0 s
[2024-05-15 21:06:45] 2024-05-16 01:06:17,927 | INFO     | . payload execution = 42594 s
[2024-05-15 21:06:45] 2024-05-16 01:06:17,927 | INFO     | . stage-out = 17 s
[2024-05-15 21:06:45] 2024-05-16 01:06:17,927 | INFO     | . log creation = 2 s
[2024-05-15 21:06:45] 2024-05-16 01:06:17,927 | INFO     | ..............................
[2024-05-15 21:06:45] 2024-05-16 01:06:18,856 | INFO     | 
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | job summary report
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | --------------------------------------------------
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | PanDA job id: 6206611712
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | task id: 38920995
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | errors: (none)
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | pilot state: finished 
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | transexitcode: 0
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | exeerrorcode: 0
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | exeerrordiag: 
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | exitcode: 0
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | exitmsg: OK
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | cpuconsumptiontime: 112729 s
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | nevents: 400
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | neventsw: 0
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | pid: 101880
[2024-05-15 21:06:45] 2024-05-16 01:06:18,857 | INFO     | pgrp: 101880
[2024-05-15 21:06:45] 2024-05-16 01:06:18,858 | INFO     | corecount: 8
[2024-05-15 21:06:45] 2024-05-16 01:06:18,858 | INFO     | event service: False
[2024-05-15 21:06:45] 2024-05-16 01:06:18,858 | INFO     | sizes: {0: 2396572, 5: 2396778, 11: 2396834, 42663: 2440481, 42681: 2449441, 42684: 2449497, 42746: 2449795}
[2024-05-15 21:06:45] 2024-05-16 01:06:18,858 | INFO     | --------------------------------------------------
[2024-05-15 21:06:45] 2024-05-16 01:06:18,858 | INFO     | 
[2024-05-15 21:06:45] 2024-05-16 01:06:18,858 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2024-05-15 21:06:45] 2024-05-16 01:06:19,358 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,359 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,360 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 21:06:45] 2024-05-16 01:06:19,360 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,360 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 21:06:45] 2024-05-16 01:06:19,360 | INFO     | job 6206611712 has completed (purged errors)
[2024-05-15 21:06:45] 2024-05-16 01:06:19,360 | INFO     | overall cleanup function is called
[2024-05-15 21:06:45] 2024-05-16 01:06:20,385 | INFO     | --- collectZombieJob: --- 10, [101880]
[2024-05-15 21:06:45] 2024-05-16 01:06:20,385 | INFO     | zombie collector waiting for pid 101880
[2024-05-15 21:06:45] 2024-05-16 01:06:20,385 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 21:06:45] 2024-05-16 01:06:21,390 | INFO     | collected zombie processes
[2024-05-15 21:06:45] 2024-05-16 01:06:21,391 | INFO     | will now attempt to kill all subprocesses of pid=101880
[2024-05-15 21:06:45] 2024-05-16 01:06:22,725 | INFO     | process IDs to be killed: [101880] (in reverse order)
[2024-05-15 21:06:45] 2024-05-16 01:06:24,481 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 21:06:45] 2024-05-16 01:06:24,482 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 21:06:45] 2024-05-16 01:06:24,569 | INFO     | did not find any defunct processes belonging to 101880
[2024-05-15 21:06:45] 2024-05-16 01:06:24,621 | INFO     | did not find any defunct processes belonging to 101880
[2024-05-15 21:06:45] 2024-05-16 01:06:24,621 | INFO     | ready for new job
[2024-05-15 21:06:45] 2024-05-16 01:06:24,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 21:06:45] 2024-05-16 01:06:24,640 | INFO     | *************************************
[2024-05-15 21:06:45] 2024-05-16 01:06:24,641 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 21:06:45] 2024-05-16 01:06:24,641 | INFO     | *************************************
[2024-05-15 21:06:45] 2024-05-16 01:06:24,641 | INFO     | 
[2024-05-15 21:06:45] 2024-05-16 01:06:24,649 | INFO     | architecture information:
[2024-05-15 21:06:45] 2024-05-16 01:06:24,682 | INFO     | executing command: cat /etc/os-release
[2024-05-15 21:06:45] 2024-05-16 01:06:24,847 | INFO     | cat /etc/os-release:
[2024-05-15 21:06:45] NAME="CentOS Linux"
[2024-05-15 21:06:45] VERSION="7 (Core)"
[2024-05-15 21:06:45] ID="centos"
[2024-05-15 21:06:45] ID_LIKE="rhel fedora"
[2024-05-15 21:06:45] VERSION_ID="7"
[2024-05-15 21:06:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 21:06:45] ANSI_COLOR="0;31"
[2024-05-15 21:06:45] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 21:06:45] HOME_URL="https://www.centos.org/"
[2024-05-15 21:06:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 21:06:45] 
[2024-05-15 21:06:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 21:06:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 21:06:45] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 21:06:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 21:06:45] 
[2024-05-15 21:06:45] 2024-05-16 01:06:24,847 | INFO     | *************************************
[2024-05-15 21:06:45] 2024-05-16 01:06:25,351 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2024-05-15 21:06:45] 2024-05-16 01:06:25,457 | INFO     | sufficient remaining disk space (101415124992 B)
[2024-05-15 21:06:45] 2024-05-16 01:06:25,457 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 21:06:45] 2024-05-16 01:06:25,458 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 21:06:45] 2024-05-16 01:06:25,458 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 21:06:45] 2024-05-16 01:06:25,458 | INFO     | aborting loop
[2024-05-15 21:06:45] 2024-05-16 01:06:25,458 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 21:06:45] 2024-05-16 01:06:25,623 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 21:06:45] 2024-05-16 01:06:25,624 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 21:06:45] 2024-05-16 01:06:25,624 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 21:06:45] 2024-05-16 01:06:25,647 | INFO     | all job control threads have been joined
[2024-05-15 21:06:45] 2024-05-16 01:06:25,866 | INFO     | all payload control threads have been joined
[2024-05-15 21:06:45] 2024-05-16 01:06:26,406 | INFO     | all data control threads have been joined
[2024-05-15 21:06:45] 2024-05-16 01:06:26,463 | INFO     | [job] retrieve thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:26,468 | INFO     | [job] job monitor thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:26,652 | INFO     | [job] control thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:26,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 21:06:45] 2024-05-16 01:06:26,820 | INFO     | [payload] failed_post thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:26,872 | INFO     | [payload] control thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:26,880 | INFO     | [payload] validate_post thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:26,918 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:26,923 | INFO     | [data] copytool_in thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:26,933 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:26,934 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:26,934 | INFO     | [job] validate thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:27,412 | INFO     | [data] control thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:27,480 | INFO     | [data] copytool_out thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:27,593 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:27,884 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 21:06:45] 2024-05-16 01:06:28,890 | INFO     | [job] queue monitor thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:30,794 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 21:06:45] 2024-05-16 01:06:32,149 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139787461359424)>', '<ExcThread(monitor, started 139786958403328)>']
[2024-05-15 21:06:45] 2024-05-16 01:06:32,703 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 21:06:45] 2024-05-16 01:06:32,704 | INFO     | [monitor] control thread has ended
[2024-05-15 21:06:45] 2024-05-16 01:06:37,176 | INFO     | all workflow threads have been joined
[2024-05-15 21:06:45] 2024-05-16 01:06:37,176 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 21:06:45] 2024-05-16 01:06:37,192 | INFO     | traces error code: 0
[2024-05-15 21:06:45] 2024-05-16 01:06:37,193 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 21:06:45] 2024-05-16 01:06:40,252 [wrapper] ==== pilot stdout END ====
[2024-05-15 21:06:45] 2024-05-16 01:06:40,366 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 21:06:45] 2024-05-16 01:06:40,412 [wrapper] pilotpid: 86159
[2024-05-15 21:06:45] 2024-05-16 01:06:40,476 [wrapper] Pilot exit status: 0
[2024-05-15 21:06:45] 2024-05-16 01:06:40,698 [wrapper] pandaids: 6206611712
[2024-05-15 21:06:45] 2024-05-16 01:06:41,579 [wrapper] cleanup: SIGTERM to supervisor_pilot 251888 86160
[2024-05-15 21:06:45] 2024-05-16 01:06:41,613 [wrapper] Test setup, not cleaning
[2024-05-15 21:06:45] 2024-05-16 01:06:41,636 [wrapper] ==== wrapper stdout END ====
[2024-05-15 21:06:45] 2024-05-16 01:06:41,697 [wrapper] ==== wrapper stderr END ====
[2024-05-15 21:06:45] 2024-05-16 01:06:41,847 [wrapper] apfmon messages muted
[2024-05-15 21:06:45]  *** Error codes and diagnostics ***
[2024-05-15 21:06:45]     "exeErrorCode": 0,
[2024-05-15 21:06:45]     "exeErrorDiag": "",
[2024-05-15 21:06:45]     "pilotErrorCode": 0,
[2024-05-15 21:06:45]     "pilotErrorDiag": "",
[2024-05-15 21:06:45]  *** Listing of results directory ***
[2024-05-15 21:06:45] total 968412
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas    467845 May 15 04:53 pilot3.tar.gz
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas      5633 May 15 05:07 queuedata.json
[2024-05-15 21:06:45] -rwx------ 1 boincer umatlas     32251 May 15 05:08 runpilot2-wrapper.sh
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas       100 May 15 09:12 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 21:06:45] -rwxr-xr-x 1 boincer umatlas      7986 May 15 09:12 run_atlas
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas       105 May 15 09:12 job.xml
[2024-05-15 21:06:45] -rw-r--r-- 2 boincer umatlas 632273533 May 15 09:12 EVNT.38776180._000141.pool.root.1
[2024-05-15 21:06:45] -rw-r--r-- 2 boincer umatlas     17537 May 15 09:12 start_atlas.sh
[2024-05-15 21:06:45] drwxrwx--x 2 boincer umatlas      4096 May 15 09:12 shared
[2024-05-15 21:06:45] -rw-r--r-- 2 boincer umatlas    480002 May 15 09:12 input.tar.gz
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas         0 May 15 09:12 boinc_lockfile
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas      2613 May 15 09:12 pandaJob.out
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas       467 May 15 09:12 setup.sh.local
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas   1010553 May 15 09:13 agis_schedconf.cvmfs.json
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas   1325758 May 15 09:13 cric_ddmendpoints.json
[2024-05-15 21:06:45] drwx------ 4 boincer umatlas      4096 May 15 09:13 pilot3
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas 345587976 May 15 21:01 HITS.38920995._003509.pool.root.1
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas       533 May 15 21:01 boinc_task_state.xml
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas      1068 May 15 21:04 memory_monitor_summary.json
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas      6384 May 15 21:04 init_data.xml
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas         0 May 15 21:05 agis_ddmendpoints.agis.ALL.json
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas    712835 May 15 21:05 log.38920995._003509.job.log.tgz.1
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas        95 May 15 21:05 pilot_heartbeat.json
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas      7803 May 15 21:06 heartbeat.json
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas      4212 May 15 21:06 pilotlog.txt
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas   4419121 May 15 21:06 log.38920995._003509.job.log.1
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas       357 May 15 21:06 output.list
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas       620 May 15 21:06 runtime_log
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas   5150720 May 15 21:06 result.tar.gz
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas       654 May 15 21:06 Zd0NDmanPR5n7Olcko1bjSoqABFKDmABFKDmOtvXDmleYKDmgIYVtn.diag
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas     11405 May 15 21:06 runtime_log.err
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas        29 May 15 21:06 wrapper_checkpoint.txt
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas      8192 May 15 21:06 boinc_mmap_file
[2024-05-15 21:06:45] -rw-r--r-- 1 boincer umatlas     21859 May 15 21:06 stderr.txt
[2024-05-15 21:06:45] HITS file was successfully produced:
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas 345587976 May 15 21:01 shared/HITS.pool.root.1
[2024-05-15 21:06:45]  *** Contents of shared directory: ***
[2024-05-15 21:06:45] total 960480
[2024-05-15 21:06:45] -rw-r--r-- 2 boincer umatlas 632273533 May 15 09:12 ATLAS.root_0
[2024-05-15 21:06:45] -rw-r--r-- 2 boincer umatlas     17537 May 15 09:12 start_atlas.sh
[2024-05-15 21:06:45] -rw-r--r-- 2 boincer umatlas    480002 May 15 09:12 input.tar.gz
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas 345587976 May 15 21:01 HITS.pool.root.1
[2024-05-15 21:06:45] -rw------- 1 boincer umatlas   5150720 May 15 21:06 result.tar.gz
21:06:47 (72609): run_atlas exited; CPU time 112047.785714
21:06:47 (72609): called boinc_finish(0)

</stderr_txt>
]]>

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