Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:07:27 (2493981): wrapper (7.7.26015): starting
17:07:27 (2493981): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 17:07:27] Arguments: --nthreads 4
[2024-05-19 17:07:27] Threads: 4
[2024-05-19 17:07:27] Checking for CVMFS
[2024-05-19 17:07:27] No cvmfs_config command found, will try listing directly
[2024-05-19 17:07:27] CVMFS is ok
[2024-05-19 17:07:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 17:07:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 17:07:27] Further information can be found at the LHC@home message board.
[2024-05-19 17:07:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 17:07:27] Checking for apptainer binary...
[2024-05-19 17:07:27] which: no apptainer in ((null))
[2024-05-19 17:07:27] apptainer is not installed, using version from CVMFS
[2024-05-19 17:07:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 17:07:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2024-05-19 17:07:28] apptainer works
[2024-05-19 17:07:28] Set ATHENA_PROC_NUMBER=4
[2024-05-19 17:07:28] Set ATHENA_CORE_NUMBER=4
[2024-05-19 17:07:28] Starting ATLAS job with PandaID=6206611403
[2024-05-19 17:07:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 22:08:09]  *** The last 200 lines of the pilot log: ***
[2024-05-19 22:08:09] 2024-05-19 20:07:49,491 | INFO     | intersect: -5017332166.510877
[2024-05-19 22:08:09] 2024-05-19 20:07:49,492 | INFO     | chi2: 0.07124400194186355
[2024-05-19 22:08:09] 2024-05-19 20:07:49,492 | INFO     | current chi2=0.07124400194186355 (change=95.90699933930176 %)
[2024-05-19 22:08:09] 2024-05-19 20:07:49,492 | INFO     | model: linear, x: [1716132198.0, 1716132259.0, 1716132320.0, 1716132381.0, 1716132442.0, 1716132503.0, 1716132564.0, 1716132625.0, 1716132686.0, 1716132747.0, 1716
[2024-05-19 22:08:09] 2024-05-19 20:07:49,492 | INFO     | sum of square deviations: 6806862510.0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,494 | INFO     | sum of deviations: 10113558287.500002
[2024-05-19 22:08:09] 2024-05-19 20:07:49,494 | INFO     | mean x: 1716140707.5
[2024-05-19 22:08:09] 2024-05-19 20:07:49,494 | INFO     | mean y: 2380201.217857143
[2024-05-19 22:08:09] 2024-05-19 20:07:49,494 | INFO     | -- intersect: -2547441989.160532
[2024-05-19 22:08:09] 2024-05-19 20:07:49,494 | INFO     | intersect: -2547441989.160532
[2024-05-19 22:08:09] 2024-05-19 20:07:49,495 | INFO     | chi2: 0.0038757610911347388
[2024-05-19 22:08:09] 2024-05-19 20:07:49,495 | INFO     | current chi2=0.0038757610911347388 (change=94.55987734336226 %)
[2024-05-19 22:08:09] 2024-05-19 20:07:49,495 | INFO     | model: linear, x: [1716132503.0, 1716132564.0, 1716132625.0, 1716132686.0, 1716132747.0, 1716132808.0, 1716132869.0, 1716132930.0, 1716132991.0, 1716133052.0, 1716
[2024-05-19 22:08:09] 2024-05-19 20:07:49,495 | INFO     | sum of square deviations: 6448679050.0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,497 | INFO     | sum of deviations: 7622434400.999999
[2024-05-19 22:08:09] 2024-05-19 20:07:49,497 | INFO     | mean x: 1716140860.0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,497 | INFO     | mean y: 2381259.1963636363
[2024-05-19 22:08:09] 2024-05-19 20:07:49,498 | INFO     | -- intersect: -2026122722.2858167
[2024-05-19 22:08:09] 2024-05-19 20:07:49,498 | INFO     | intersect: -2026122722.2858167
[2024-05-19 22:08:09] 2024-05-19 20:07:49,498 | INFO     | chi2: 0.0016528269471367206
[2024-05-19 22:08:09] 2024-05-19 20:07:49,498 | INFO     | current chi2=0.0016528269471367206 (change=57.35477733864115 %)
[2024-05-19 22:08:09] 2024-05-19 20:07:49,498 | INFO     | model: linear, x: [1716132808.0, 1716132869.0, 1716132930.0, 1716132991.0, 1716133052.0, 1716133113.0, 1716133174.0, 1716133235.0, 1716133296.0, 1716133357.0, 1716
[2024-05-19 22:08:09] 2024-05-19 20:07:49,498 | INFO     | sum of square deviations: 6103286527.5
[2024-05-19 22:08:09] 2024-05-19 20:07:49,500 | INFO     | sum of deviations: 6088670195.499999
[2024-05-19 22:08:09] 2024-05-19 20:07:49,500 | INFO     | mean x: 1716141012.5
[2024-05-19 22:08:09] 2024-05-19 20:07:49,500 | INFO     | mean y: 2381935.774074074
[2024-05-19 22:08:09] 2024-05-19 20:07:49,501 | INFO     | -- intersect: -1709649211.2158444
[2024-05-19 22:08:09] 2024-05-19 20:07:49,501 | INFO     | intersect: -1709649211.2158444
[2024-05-19 22:08:09] 2024-05-19 20:07:49,501 | INFO     | chi2: 0.0009489970075537387
[2024-05-19 22:08:09] 2024-05-19 20:07:49,501 | INFO     | current chi2=0.0009489970075537387 (change=42.583401777316354 %)
[2024-05-19 22:08:09] 2024-05-19 20:07:49,501 | INFO     | model: linear, x: [1716133113.0, 1716133174.0, 1716133235.0, 1716133296.0, 1716133357.0, 1716133418.0, 1716133479.0, 1716133540.0, 1716133601.0, 1716133662.0, 1716
[2024-05-19 22:08:09] 2024-05-19 20:07:49,501 | INFO     | sum of square deviations: 5770452380.0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,503 | INFO     | sum of deviations: 4985722028.0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,503 | INFO     | mean x: 1716141165.0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,503 | INFO     | mean y: 2382440.0679245284
[2024-05-19 22:08:09] 2024-05-19 20:07:49,503 | INFO     | -- intersect: -1480378745.0262122
[2024-05-19 22:08:09] 2024-05-19 20:07:49,504 | INFO     | intersect: -1480378745.0262122
[2024-05-19 22:08:09] 2024-05-19 20:07:49,504 | INFO     | chi2: 0.0005810841986435799
[2024-05-19 22:08:09] 2024-05-19 20:07:49,504 | INFO     | current chi2=0.0005810841986435799 (change=38.7685952623328 %)
[2024-05-19 22:08:09] 2024-05-19 20:07:49,504 | INFO     | model: linear, x: [1716133418.0, 1716133479.0, 1716133540.0, 1716133601.0, 1716133662.0, 1716133723.0, 1716133784.0, 1716133845.0, 1716133906.0, 1716133967.0, 1716
[2024-05-19 22:08:09] 2024-05-19 20:07:49,504 | INFO     | sum of square deviations: 5449944045.0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,506 | INFO     | sum of deviations: 4421451806.500001
[2024-05-19 22:08:09] 2024-05-19 20:07:49,506 | INFO     | mean x: 1716141317.5
[2024-05-19 22:08:09] 2024-05-19 20:07:49,506 | INFO     | mean y: 2382708.5807692306
[2024-05-19 22:08:09] 2024-05-19 20:07:49,506 | INFO     | -- intersect: -1389895095.7080758
[2024-05-19 22:08:09] 2024-05-19 20:07:49,506 | INFO     | intersect: -1389895095.7080758
[2024-05-19 22:08:09] 2024-05-19 20:07:49,507 | INFO     | chi2: 0.0005326104206202643
[2024-05-19 22:08:09] 2024-05-19 20:07:49,507 | INFO     | current chi2=0.0005326104206202643 (change=8.341954253181823 %)
[2024-05-19 22:08:09] 2024-05-19 20:07:49,507 | INFO     | left removable region: 70
[2024-05-19 22:08:09] 2024-05-19 20:07:49,507 | INFO     | model: linear, x: [1716135553.0, 1716135614.0, 1716135675.0, 1716135736.0, 1716135797.0, 1716135858.0, 1716135919.0, 1716135980.0, 1716136041.0, 1716136102.0, 1716
[2024-05-19 22:08:09] 2024-05-19 20:07:49,507 | INFO     | sum of square deviations: 3256879670.0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,509 | INFO     | sum of deviations: 3174224609.0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,509 | INFO     | mean x: 1716142202.0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,509 | INFO     | mean y: 2383078.5570776258
[2024-05-19 22:08:09] 2024-05-19 20:07:49,509 | INFO     | -- intersect: -1670205829.2584355
[2024-05-19 22:08:09] 2024-05-19 20:07:49,509 | INFO     | intersect: -1670205829.2584355
[2024-05-19 22:08:09] 2024-05-19 20:07:49,509 | INFO     | chi2: 0.00024033623213319319
[2024-05-19 22:08:09] 2024-05-19 20:07:49,509 | INFO     | -- intersect: -1670205829.2584355
[2024-05-19 22:08:09] 2024-05-19 20:07:49,509 | INFO     | current memory leak: 0.97 B/s (using 219 data points, chi2=0.00)
[2024-05-19 22:08:09] 2024-05-19 20:07:49,510 | INFO     | ..............................
[2024-05-19 22:08:09] 2024-05-19 20:07:49,510 | INFO     | . Timing measurements:
[2024-05-19 22:08:09] 2024-05-19 20:07:49,510 | INFO     | . get job = 0 s
[2024-05-19 22:08:09] 2024-05-19 20:07:49,510 | INFO     | . initial setup = 1 s
[2024-05-19 22:08:09] 2024-05-19 20:07:49,510 | INFO     | . payload setup = 5 s
[2024-05-19 22:08:09] 2024-05-19 20:07:49,510 | INFO     | . stage-in = 0 s
[2024-05-19 22:08:09] 2024-05-19 20:07:49,510 | INFO     | . payload execution = 17981 s
[2024-05-19 22:08:09] 2024-05-19 20:07:49,510 | INFO     | . stage-out = 1 s
[2024-05-19 22:08:09] 2024-05-19 20:07:49,510 | INFO     | . log creation = 0 s
[2024-05-19 22:08:09] 2024-05-19 20:07:49,510 | INFO     | ..............................
[2024-05-19 22:08:09] 2024-05-19 20:07:49,569 | INFO     | 
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | job summary report
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | --------------------------------------------------
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | PanDA job id: 6206611403
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | task id: 38920995
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | errors: (none)
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | pilot state: finished 
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | transexitcode: 0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | exeerrorcode: 0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | exeerrordiag: 
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | exitcode: 0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | exitmsg: OK
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | cpuconsumptiontime: 68605 s
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | nevents: 400
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | neventsw: 0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | pid: 2508467
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | pgrp: 2508467
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | corecount: 4
[2024-05-19 22:08:09] 2024-05-19 20:07:49,570 | INFO     | event service: False
[2024-05-19 22:08:09] 2024-05-19 20:07:49,571 | INFO     | sizes: {0: 2391914, 1: 2392113, 5: 2392319, 11: 2392375, 17990: 2424629, 17992: 2433797, 17996: 2433911}
[2024-05-19 22:08:09] 2024-05-19 20:07:49,571 | INFO     | --------------------------------------------------
[2024-05-19 22:08:09] 2024-05-19 20:07:49,571 | INFO     | 
[2024-05-19 22:08:09] 2024-05-19 20:07:49,571 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/0
[2024-05-19 22:08:09] 2024-05-19 20:07:49,592 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,592 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,592 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,593 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,594 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,594 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,594 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 22:08:09] 2024-05-19 20:07:49,594 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,594 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 22:08:09] 2024-05-19 20:07:49,594 | INFO     | job 6206611403 has completed (purged errors)
[2024-05-19 22:08:09] 2024-05-19 20:07:49,594 | INFO     | overall cleanup function is called
[2024-05-19 22:08:09] 2024-05-19 20:07:50,601 | INFO     | --- collectZombieJob: --- 10, [2508467]
[2024-05-19 22:08:09] 2024-05-19 20:07:50,602 | INFO     | zombie collector waiting for pid 2508467
[2024-05-19 22:08:09] 2024-05-19 20:07:50,602 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 22:08:09] 2024-05-19 20:07:51,607 | INFO     | collected zombie processes
[2024-05-19 22:08:09] 2024-05-19 20:07:51,607 | INFO     | will now attempt to kill all subprocesses of pid=2508467
[2024-05-19 22:08:09] 2024-05-19 20:07:51,803 | INFO     | process IDs to be killed: [2508467] (in reverse order)
[2024-05-19 22:08:09] 2024-05-19 20:07:51,942 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 22:08:09] 2024-05-19 20:07:51,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 22:08:09] 2024-05-19 20:07:51,955 | INFO     | did not find any defunct processes belonging to 2508467
[2024-05-19 22:08:09] 2024-05-19 20:07:51,965 | INFO     | did not find any defunct processes belonging to 2508467
[2024-05-19 22:08:09] 2024-05-19 20:07:51,965 | INFO     | ready for new job
[2024-05-19 22:08:09] 2024-05-19 20:07:51,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 22:08:09] 2024-05-19 20:07:51,967 | INFO     | *************************************
[2024-05-19 22:08:09] 2024-05-19 20:07:51,967 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 22:08:09] 2024-05-19 20:07:51,967 | INFO     | *************************************
[2024-05-19 22:08:09] 2024-05-19 20:07:51,967 | INFO     | 
[2024-05-19 22:08:09] 2024-05-19 20:07:51,972 | INFO     | architecture information:
[2024-05-19 22:08:09] 2024-05-19 20:07:51,972 | INFO     | executing command: cat /etc/os-release
[2024-05-19 22:08:09] 2024-05-19 20:07:51,986 | INFO     | cat /etc/os-release:
[2024-05-19 22:08:09] NAME="CentOS Linux"
[2024-05-19 22:08:09] VERSION="7 (Core)"
[2024-05-19 22:08:09] ID="centos"
[2024-05-19 22:08:09] ID_LIKE="rhel fedora"
[2024-05-19 22:08:09] VERSION_ID="7"
[2024-05-19 22:08:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 22:08:09] ANSI_COLOR="0;31"
[2024-05-19 22:08:09] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 22:08:09] HOME_URL="https://www.centos.org/"
[2024-05-19 22:08:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 22:08:09] 
[2024-05-19 22:08:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 22:08:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 22:08:09] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 22:08:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 22:08:09] 
[2024-05-19 22:08:09] 2024-05-19 20:07:51,986 | INFO     | *************************************
[2024-05-19 22:08:09] 2024-05-19 20:07:52,487 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/0
[2024-05-19 22:08:09] 2024-05-19 20:07:52,507 | INFO     | sufficient remaining disk space (2993445404672 B)
[2024-05-19 22:08:09] 2024-05-19 20:07:52,508 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 22:08:09] 2024-05-19 20:07:52,508 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 22:08:09] 2024-05-19 20:07:52,672 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 22:08:09] 2024-05-19 20:07:52,705 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 22:08:09] 2024-05-19 20:07:52,706 | INFO     | aborting loop
[2024-05-19 22:08:09] 2024-05-19 20:07:52,731 | INFO     | all job control threads have been joined
[2024-05-19 22:08:09] 2024-05-19 20:07:53,218 | INFO     | all data control threads have been joined
[2024-05-19 22:08:09] 2024-05-19 20:07:53,295 | INFO     | all payload control threads have been joined
[2024-05-19 22:08:09] 2024-05-19 20:07:53,368 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 22:08:09] 2024-05-19 20:07:53,369 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 22:08:09] 2024-05-19 20:07:53,369 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 22:08:09] 2024-05-19 20:07:53,514 | INFO     | [job] retrieve thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:53,696 | INFO     | [data] copytool_in thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:53,712 | INFO     | [job] job monitor thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:53,713 | INFO     | [job] validate thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:53,736 | INFO     | [job] control thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:53,994 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:54,165 | INFO     | [payload] validate_post thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:54,223 | INFO     | [data] control thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:54,301 | INFO     | [payload] control thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:54,526 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:54,577 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 22:08:09] 2024-05-19 20:07:54,678 | INFO     | [data] copytool_out thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:54,806 | INFO     | [payload] failed_post thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:55,002 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:55,240 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 22:08:09] 2024-05-19 20:07:55,582 | INFO     | [job] queue monitor thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:07:59,246 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:08:02,666 | INFO     | job.realtimelogging is not enabled
[2024-05-19 22:08:09] 2024-05-19 20:08:03,672 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 22:08:09] 2024-05-19 20:08:04,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47447725806656)>', '<ExcThread(monitor, started 47447894955776)>']
[2024-05-19 22:08:09] 2024-05-19 20:08:04,423 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 22:08:09] 2024-05-19 20:08:04,424 | INFO     | [monitor] control thread has ended
[2024-05-19 22:08:09] 2024-05-19 20:08:09,054 | INFO     | all workflow threads have been joined
[2024-05-19 22:08:09] 2024-05-19 20:08:09,055 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 22:08:09] 2024-05-19 20:08:09,055 | INFO     | traces error code: 0
[2024-05-19 22:08:09] 2024-05-19 20:08:09,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 22:08:09] 2024-05-19 20:08:09,126 [wrapper] ==== pilot stdout END ====
[2024-05-19 22:08:09] 2024-05-19 20:08:09,129 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 22:08:09] 2024-05-19 20:08:09,131 [wrapper] pilotpid: 2498601
[2024-05-19 22:08:09] 2024-05-19 20:08:09,134 [wrapper] Pilot exit status: 0
[2024-05-19 22:08:09] 2024-05-19 20:08:09,143 [wrapper] pandaids: 6206611403
[2024-05-19 22:08:09] 2024-05-19 20:08:09,225 [wrapper] cleanup: SIGTERM to supervisor_pilot 3810899 2498602
[2024-05-19 22:08:09] 2024-05-19 20:08:09,227 [wrapper] Test setup, not cleaning
[2024-05-19 22:08:09] 2024-05-19 20:08:09,229 [wrapper] ==== wrapper stdout END ====
[2024-05-19 22:08:09] 2024-05-19 20:08:09,231 [wrapper] ==== wrapper stderr END ====
[2024-05-19 22:08:09] 2024-05-19 20:08:09,234 [wrapper] apfmon messages muted
[2024-05-19 22:08:09]  *** Error codes and diagnostics ***
[2024-05-19 22:08:09]     "exeErrorCode": 0,
[2024-05-19 22:08:09]     "exeErrorDiag": "",
[2024-05-19 22:08:09]     "pilotErrorCode": 0,
[2024-05-19 22:08:09]     "pilotErrorDiag": "",
[2024-05-19 22:08:09]  *** Listing of results directory ***
[2024-05-19 22:08:09] total 969384
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc    467845 May 15 10:17 pilot3.tar.gz
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc      5633 May 15 10:25 queuedata.json
[2024-05-19 22:08:09] -rwx------ 1 boinc boinc     32251 May 15 10:27 runpilot2-wrapper.sh
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc       100 May 19 17:07 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 22:08:09] -rwxr-xr-x 1 boinc boinc      7986 May 19 17:07 run_atlas
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc       105 May 19 17:07 job.xml
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc      6643 May 19 17:07 init_data.xml
[2024-05-19 22:08:09] -rw-r--r-- 2 boinc boinc 633336315 May 19 17:07 EVNT.38776180._000136.pool.root.1
[2024-05-19 22:08:09] drwxrwx--x 2 boinc boinc      4096 May 19 17:07 shared
[2024-05-19 22:08:09] -rw-r--r-- 2 boinc boinc    480004 May 19 17:07 input.tar.gz
[2024-05-19 22:08:09] -rw-r--r-- 2 boinc boinc     17537 May 19 17:07 start_atlas.sh
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc         0 May 19 17:07 boinc_lockfile
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc      2612 May 19 17:07 pandaJob.out
[2024-05-19 22:08:09] -rw------- 1 boinc boinc       424 May 19 17:07 setup.sh.local
[2024-05-19 22:08:09] -rw------- 1 boinc boinc   1014069 May 19 17:07 agis_schedconf.cvmfs.json
[2024-05-19 22:08:09] -rw------- 1 boinc boinc   1324701 May 19 17:07 cric_ddmendpoints.json
[2024-05-19 22:08:09] drwx------ 4 boinc boinc      4096 May 19 17:07 pilot3
[2024-05-19 22:08:09] -rw------- 1 boinc boinc 350862833 May 19 22:07 HITS.38920995._003400.pool.root.1
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc       532 May 19 22:07 boinc_task_state.xml
[2024-05-19 22:08:09] -rw------- 1 boinc boinc        95 May 19 22:07 pilot_heartbeat.json
[2024-05-19 22:08:09] -rw------- 1 boinc boinc      1039 May 19 22:07 memory_monitor_summary.json
[2024-05-19 22:08:09] -rw------- 1 boinc boinc         0 May 19 22:07 agis_ddmendpoints.agis.ALL.json
[2024-05-19 22:08:09] -rw------- 1 boinc boinc    408766 May 19 22:07 log.38920995._003400.job.log.tgz.1
[2024-05-19 22:08:09] -rw------- 1 boinc boinc      7724 May 19 22:07 heartbeat.json
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc        28 May 19 22:08 wrapper_checkpoint.txt
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc      8192 May 19 22:08 boinc_mmap_file
[2024-05-19 22:08:09] -rw------- 1 boinc boinc      4295 May 19 22:08 pilotlog.txt
[2024-05-19 22:08:09] -rw------- 1 boinc boinc   2054388 May 19 22:08 log.38920995._003400.job.log.1
[2024-05-19 22:08:09] -rw------- 1 boinc boinc       357 May 19 22:08 output.list
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc       620 May 19 22:08 runtime_log
[2024-05-19 22:08:09] -rw------- 1 boinc boinc   2478080 May 19 22:08 result.tar.gz
[2024-05-19 22:08:09] -rw------- 1 boinc boinc       658 May 19 22:08 sAlKDmRAPR5nsSi4apGgGQJmABFKDmABFKDm4ySLDm43NKDmkMhyom.diag
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc     11429 May 19 22:08 runtime_log.err
[2024-05-19 22:08:09] -rw-r--r-- 1 boinc boinc     21366 May 19 22:08 stderr.txt
[2024-05-19 22:08:09] HITS file was successfully produced:
[2024-05-19 22:08:09] -rw------- 1 boinc boinc 350862833 May 19 22:07 shared/HITS.pool.root.1
[2024-05-19 22:08:09]  *** Contents of shared directory: ***
[2024-05-19 22:08:09] total 964056
[2024-05-19 22:08:09] -rw-r--r-- 2 boinc boinc 633336315 May 19 17:07 ATLAS.root_0
[2024-05-19 22:08:09] -rw-r--r-- 2 boinc boinc    480004 May 19 17:07 input.tar.gz
[2024-05-19 22:08:09] -rw-r--r-- 2 boinc boinc     17537 May 19 17:07 start_atlas.sh
[2024-05-19 22:08:09] -rw------- 1 boinc boinc 350862833 May 19 22:07 HITS.pool.root.1
[2024-05-19 22:08:09] -rw------- 1 boinc boinc   2478080 May 19 22:08 result.tar.gz
22:08:11 (2493981): run_atlas exited; CPU time 68261.579529
22:08:11 (2493981): called boinc_finish(0)

</stderr_txt>
]]>

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