Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:11:44 (1551591): wrapper (7.7.26015): starting
02:11:44 (1551591): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 02:11:45] Arguments: --nthreads 12
[2024-05-17 02:11:45] Threads: 12
[2024-05-17 02:11:45] Checking for CVMFS
[2024-05-17 02:11:45] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 02:11:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 02:11:45] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 02:11:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 02:11:45] 2.11.3.0 11199 10943 94616 132818 1 60 42071818 46080000 911 130560 0 12652796 99.942 1743251 34688 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2024-05-17 02:11:45] CVMFS is ok
[2024-05-17 02:11:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 02:11:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 02:11:45] Further information can be found at the LHC@home message board.
[2024-05-17 02:11:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 02:11:45] Checking for apptainer binary...
[2024-05-17 02:11:45] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 02:11:45] Running /usr/bin/apptainer --version
[2024-05-17 02:11:45] apptainer version 1.3.1-1.el7
[2024-05-17 02:11:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 02:11:45] minis01.farm.particle.cz
[2024-05-17 02:11:45] apptainer works
[2024-05-17 02:11:45] Set ATHENA_PROC_NUMBER=12
[2024-05-17 02:11:45] Set ATHENA_CORE_NUMBER=12
[2024-05-17 02:11:45] Starting ATLAS job with PandaID=6206607627
[2024-05-17 02:11:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 03:18:31]  *** The last 200 lines of the pilot log: ***
[2024-05-17 03:18:31]  mtime=0
[2024-05-17 03:18:31]  protocol_id=None
[2024-05-17 03:18:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 03:18:31]  replicas=None
[2024-05-17 03:18:31]  scope=mc23_13p6TeV
[2024-05-17 03:18:31]  status=None
[2024-05-17 03:18:31]  status_code=0
[2024-05-17 03:18:31]  storage_token=
[2024-05-17 03:18:31]  surl=/scratch/.boinc/slots/2/PanDA_Pilot-6206607627/log.38776104._004084.job.log.tgz.1
[2024-05-17 03:18:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/9c/log.38776104._004084.job.log.tgz.1
[2024-05-17 03:18:31]  workdir=None
[2024-05-17 03:18:31] ]
[2024-05-17 03:18:31] 2024-05-17 01:18:08,105 | WARNING  | process 1562798 is no longer using CPU - aborting
[2024-05-17 03:18:31] 2024-05-17 01:18:08,106 | INFO     | transferring file log.38776104._004084.job.log.tgz.1 from /scratch/.boinc/slots/2/PanDA_Pilot-6206607627/log.38776104._004084.job.log.tgz.1 to /scratch/.boinc/slot
[2024-05-17 03:18:31] 2024-05-17 01:18:08,106 | INFO     | will not send any job update
[2024-05-17 03:18:31] 2024-05-17 01:18:08,106 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/2/PanDA_Pilot-6206607627/log.38776104._004084.job.log.tgz.1 /scratch/.boinc/slots/2/log.38776104._004084.j
[2024-05-17 03:18:31] 2024-05-17 01:18:08,124 | INFO     | adding to output.list: log.38776104._004084.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/9c/log.38776104._004084.job.log.tg
[2024-05-17 03:18:31] 2024-05-17 01:18:08,125 | INFO     | summary of transferred files:
[2024-05-17 03:18:31] 2024-05-17 01:18:08,125 | INFO     |  -- lfn=log.38776104._004084.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 03:18:31] 2024-05-17 01:18:08,125 | INFO     | stage-out finished correctly
[2024-05-17 03:18:31] 2024-05-17 01:18:08,352 | INFO     | 3973s have passed since pilot start
[2024-05-17 03:18:31] 2024-05-17 01:18:10,610 | INFO     | monitor loop #315: job 0:6206607627 is in state 'finished'
[2024-05-17 03:18:31] 2024-05-17 01:18:10,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 03:18:31] 2024-05-17 01:18:10,711 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 03:18:31] 2024-05-17 01:18:12,840 | INFO     | job 6206607627 has state=finished
[2024-05-17 03:18:31] 2024-05-17 01:18:12,840 | INFO     | preparing for final server update for job 6206607627 in state='finished'
[2024-05-17 03:18:31] 2024-05-17 01:18:13,113 | INFO     | monitor loop #316: job 0:6206607627 is in state 'finished'
[2024-05-17 03:18:31] 2024-05-17 01:18:13,113 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 03:18:31] 2024-05-17 01:18:13,412 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-05-17 03:18:31] 2024-05-17 01:18:13,413 | INFO     | this job has now completed (state=finished)
[2024-05-17 03:18:31] 2024-05-17 01:18:13,413 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 03:18:31] 2024-05-17 01:18:13,413 | INFO     | job 6206607627 has finished - writing final server update
[2024-05-17 03:18:31] 2024-05-17 01:18:13,413 | INFO     | total number of processed events: 400 (read)
[2024-05-17 03:18:31] 2024-05-17 01:18:13,417 | INFO     | executing command: lscpu
[2024-05-17 03:18:31] 2024-05-17 01:18:13,443 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-05-17 03:18:31] 2024-05-17 01:18:13,444 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 03:18:31] 2024-05-17 01:18:13,487 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 03:18:31] 2024-05-17 01:18:15,616 | INFO     | monitor loop #317: job 0:6206607627 is in state 'finished'
[2024-05-17 03:18:31] 2024-05-17 01:18:15,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 03:18:31] 2024-05-17 01:18:18,119 | INFO     | monitor loop #318: job 0:6206607627 is in state 'finished'
[2024-05-17 03:18:31] 2024-05-17 01:18:18,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 03:18:31] 2024-05-17 01:18:18,317 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-17 03:18:31] 2024-05-17 01:18:18,318 | INFO     | using path: /scratch/.boinc/slots/2/PanDA_Pilot-6206607627/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 03:18:31] 2024-05-17 01:18:18,320 | INFO     | extracted standard info from prmon json
[2024-05-17 03:18:31] 2024-05-17 01:18:18,320 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 03:18:31] 2024-05-17 01:18:18,320 | WARNING  | GPU info not found in prmon json
[2024-05-17 03:18:31] 2024-05-17 01:18:18,320 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 03:18:31] 2024-05-17 01:18:18,321 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 03:18:31] 2024-05-17 01:18:18,323 | INFO     | fitting pss+swap vs Time
[2024-05-17 03:18:31] 2024-05-17 01:18:18,324 | INFO     | model: linear, x: [1715905047.0, 1715905108.0, 1715905169.0, 1715905230.0, 1715905291.0, 1715905352.0, 1715905413.0, 1715905474.0, 1715905535.0, 1715905596.0, 1715
[2024-05-17 03:18:31] 2024-05-17 01:18:18,324 | INFO     | sum of square deviations: 60482994.5
[2024-05-17 03:18:31] 2024-05-17 01:18:18,325 | INFO     | sum of deviations: 17901690862.0
[2024-05-17 03:18:31] 2024-05-17 01:18:18,325 | INFO     | mean x: 1715906785.5
[2024-05-17 03:18:31] 2024-05-17 01:18:18,325 | INFO     | mean y: 2641753.6551724137
[2024-05-17 03:18:31] 2024-05-17 01:18:18,325 | INFO     | -- intersect: -507869580446.4071
[2024-05-17 03:18:31] 2024-05-17 01:18:18,325 | INFO     | intersect: -507869580446.4071
[2024-05-17 03:18:31] 2024-05-17 01:18:18,326 | INFO     | chi2: 2.105753423770979
[2024-05-17 03:18:31] 2024-05-17 01:18:18,326 | INFO     | -- intersect: -507869580446.4071
[2024-05-17 03:18:31] 2024-05-17 01:18:18,326 | INFO     | current memory leak: 295.98 B/s (using 58 data points, chi2=2.11)
[2024-05-17 03:18:31] 2024-05-17 01:18:18,327 | INFO     | ..............................
[2024-05-17 03:18:31] 2024-05-17 01:18:18,327 | INFO     | . Timing measurements:
[2024-05-17 03:18:31] 2024-05-17 01:18:18,327 | INFO     | . get job = 0 s
[2024-05-17 03:18:31] 2024-05-17 01:18:18,327 | INFO     | . initial setup = 1 s
[2024-05-17 03:18:31] 2024-05-17 01:18:18,327 | INFO     | . payload setup = 6 s
[2024-05-17 03:18:31] 2024-05-17 01:18:18,327 | INFO     | . stage-in = 0 s
[2024-05-17 03:18:31] 2024-05-17 01:18:18,328 | INFO     | . payload execution = 3945 s
[2024-05-17 03:18:31] 2024-05-17 01:18:18,328 | INFO     | . stage-out = 0 s
[2024-05-17 03:18:31] 2024-05-17 01:18:18,328 | INFO     | . log creation = 0 s
[2024-05-17 03:18:31] 2024-05-17 01:18:18,328 | INFO     | ..............................
[2024-05-17 03:18:31] 2024-05-17 01:18:18,876 | INFO     | 
[2024-05-17 03:18:31] 2024-05-17 01:18:18,876 | INFO     | job summary report
[2024-05-17 03:18:31] 2024-05-17 01:18:18,877 | INFO     | --------------------------------------------------
[2024-05-17 03:18:31] 2024-05-17 01:18:18,877 | INFO     | PanDA job id: 6206607627
[2024-05-17 03:18:31] 2024-05-17 01:18:18,877 | INFO     | task id: 38776104
[2024-05-17 03:18:31] 2024-05-17 01:18:18,877 | INFO     | errors: (none)
[2024-05-17 03:18:31] 2024-05-17 01:18:18,877 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 03:18:31] 2024-05-17 01:18:18,877 | INFO     | pilot state: finished 
[2024-05-17 03:18:31] 2024-05-17 01:18:18,877 | INFO     | transexitcode: 0
[2024-05-17 03:18:31] 2024-05-17 01:18:18,877 | INFO     | exeerrorcode: 0
[2024-05-17 03:18:31] 2024-05-17 01:18:18,878 | INFO     | exeerrordiag: 
[2024-05-17 03:18:31] 2024-05-17 01:18:18,878 | INFO     | exitcode: 0
[2024-05-17 03:18:31] 2024-05-17 01:18:18,878 | INFO     | exitmsg: OK
[2024-05-17 03:18:31] 2024-05-17 01:18:18,878 | INFO     | cpuconsumptiontime: 38231 s
[2024-05-17 03:18:31] 2024-05-17 01:18:18,878 | INFO     | nevents: 400
[2024-05-17 03:18:31] 2024-05-17 01:18:18,878 | INFO     | neventsw: 0
[2024-05-17 03:18:31] 2024-05-17 01:18:18,878 | INFO     | pid: 1562798
[2024-05-17 03:18:31] 2024-05-17 01:18:18,878 | INFO     | pgrp: 1562798
[2024-05-17 03:18:31] 2024-05-17 01:18:18,878 | INFO     | corecount: 12
[2024-05-17 03:18:31] 2024-05-17 01:18:18,878 | INFO     | event service: False
[2024-05-17 03:18:31] 2024-05-17 01:18:18,878 | INFO     | sizes: {0: 2392032, 1: 2392231, 5: 2392437, 11: 2392493, 3955: 2418282, 3956: 2427244, 3959: 2427428, 3967: 2427598}
[2024-05-17 03:18:31] 2024-05-17 01:18:18,879 | INFO     | --------------------------------------------------
[2024-05-17 03:18:31] 2024-05-17 01:18:18,879 | INFO     | 
[2024-05-17 03:18:31] 2024-05-17 01:18:18,879 | INFO     | executing command: ls -lF /scratch/.boinc/slots/2
[2024-05-17 03:18:31] 2024-05-17 01:18:18,897 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,897 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,897 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,897 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,897 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,897 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,898 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,898 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,898 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,898 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,898 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,898 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,898 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,898 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,898 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,899 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,899 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,899 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 03:18:31] 2024-05-17 01:18:18,899 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,899 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 03:18:31] 2024-05-17 01:18:18,899 | INFO     | job 6206607627 has completed (purged errors)
[2024-05-17 03:18:31] 2024-05-17 01:18:18,899 | INFO     | overall cleanup function is called
[2024-05-17 03:18:31] 2024-05-17 01:18:19,907 | INFO     | --- collectZombieJob: --- 10, [1562798]
[2024-05-17 03:18:31] 2024-05-17 01:18:19,908 | INFO     | zombie collector waiting for pid 1562798
[2024-05-17 03:18:31] 2024-05-17 01:18:19,908 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 03:18:31] 2024-05-17 01:18:20,913 | INFO     | collected zombie processes
[2024-05-17 03:18:31] 2024-05-17 01:18:20,913 | INFO     | will now attempt to kill all subprocesses of pid=1562798
[2024-05-17 03:18:31] 2024-05-17 01:18:21,058 | INFO     | process IDs to be killed: [1562798] (in reverse order)
[2024-05-17 03:18:31] 2024-05-17 01:18:21,115 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 03:18:31] 2024-05-17 01:18:21,116 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 03:18:31] 2024-05-17 01:18:21,125 | INFO     | did not find any defunct processes belonging to 1562798
[2024-05-17 03:18:31] 2024-05-17 01:18:21,133 | INFO     | did not find any defunct processes belonging to 1562798
[2024-05-17 03:18:31] 2024-05-17 01:18:21,134 | INFO     | ready for new job
[2024-05-17 03:18:31] 2024-05-17 01:18:21,134 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 03:18:31] 2024-05-17 01:18:21,135 | INFO     | *************************************
[2024-05-17 03:18:31] 2024-05-17 01:18:21,136 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 03:18:31] 2024-05-17 01:18:21,136 | INFO     | *************************************
[2024-05-17 03:18:31] 2024-05-17 01:18:21,136 | INFO     | 
[2024-05-17 03:18:31] 2024-05-17 01:18:21,139 | INFO     | architecture information:
[2024-05-17 03:18:31] 2024-05-17 01:18:21,139 | INFO     | executing command: cat /etc/os-release
[2024-05-17 03:18:31] 2024-05-17 01:18:21,154 | INFO     | cat /etc/os-release:
[2024-05-17 03:18:31] NAME="CentOS Linux"
[2024-05-17 03:18:31] VERSION="7 (Core)"
[2024-05-17 03:18:31] ID="centos"
[2024-05-17 03:18:31] ID_LIKE="rhel fedora"
[2024-05-17 03:18:31] VERSION_ID="7"
[2024-05-17 03:18:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 03:18:31] ANSI_COLOR="0;31"
[2024-05-17 03:18:31] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 03:18:31] HOME_URL="https://www.centos.org/"
[2024-05-17 03:18:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 03:18:31] 
[2024-05-17 03:18:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 03:18:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 03:18:31] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 03:18:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 03:18:31] 
[2024-05-17 03:18:31] 2024-05-17 01:18:21,154 | INFO     | *************************************
[2024-05-17 03:18:31] 2024-05-17 01:18:21,658 | INFO     | executing command: df -mP /scratch/.boinc/slots/2
[2024-05-17 03:18:31] 2024-05-17 01:18:21,678 | INFO     | sufficient remaining disk space (708762927104 B)
[2024-05-17 03:18:31] 2024-05-17 01:18:21,679 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 03:18:31] 2024-05-17 01:18:21,679 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 03:18:31] 2024-05-17 01:18:21,680 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 03:18:31] 2024-05-17 01:18:21,680 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 03:18:31] 2024-05-17 01:18:21,680 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 03:18:31] 2024-05-17 01:18:21,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 03:18:31] 2024-05-17 01:18:21,681 | INFO     | aborting loop
[2024-05-17 03:18:31] 2024-05-17 01:18:21,681 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 03:18:31] 2024-05-17 01:18:21,682 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 03:18:31] 2024-05-17 01:18:21,682 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 03:18:31] 2024-05-17 01:18:21,705 | INFO     | all data control threads have been joined
[2024-05-17 03:18:31] 2024-05-17 01:18:21,758 | INFO     | all job control threads have been joined
[2024-05-17 03:18:31] 2024-05-17 01:18:22,517 | INFO     | all payload control threads have been joined
[2024-05-17 03:18:31] 2024-05-17 01:18:22,685 | INFO     | [job] retrieve thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:22,687 | INFO     | [job] job monitor thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:22,711 | INFO     | [data] control thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:22,763 | INFO     | [job] control thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:22,826 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:22,831 | INFO     | [job] validate thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:23,205 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:23,214 | INFO     | [payload] failed_post thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:23,233 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:23,444 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 03:18:31] 2024-05-17 01:18:23,469 | INFO     | [data] copytool_in thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:23,522 | INFO     | [payload] control thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:23,687 | INFO     | [data] copytool_out thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:23,720 | INFO     | [payload] validate_post thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:24,011 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:24,450 | INFO     | [job] queue monitor thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:25,685 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 03:18:31] 2024-05-17 01:18:25,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140032941020992)>', '<ExcThread(monitor, started 140032660707072)>']
[2024-05-17 03:18:31] 2024-05-17 01:18:26,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 03:18:31] 2024-05-17 01:18:26,706 | INFO     | [monitor] control thread has ended
[2024-05-17 03:18:31] 2024-05-17 01:18:30,950 | INFO     | all workflow threads have been joined
[2024-05-17 03:18:31] 2024-05-17 01:18:30,951 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 03:18:31] 2024-05-17 01:18:30,951 | INFO     | traces error code: 0
[2024-05-17 03:18:31] 2024-05-17 01:18:30,951 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 03:18:31] 2024-05-17 01:18:31,027 [wrapper] ==== pilot stdout END ====
[2024-05-17 03:18:31] 2024-05-17 01:18:31,031 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 03:18:31] 2024-05-17 01:18:31,035 [wrapper] pilotpid: 1556027
[2024-05-17 03:18:31] 2024-05-17 01:18:31,038 [wrapper] Pilot exit status: 0
[2024-05-17 03:18:31] 2024-05-17 01:18:31,051 [wrapper] pandaids: 6206607627
[2024-05-17 03:18:31] 2024-05-17 01:18:31,103 [wrapper] cleanup: SIGTERM to supervisor_pilot 1613719 1556028
[2024-05-17 03:18:31] 2024-05-17 01:18:31,106 [wrapper] Test setup, not cleaning
[2024-05-17 03:18:31] 2024-05-17 01:18:31,110 [wrapper] ==== wrapper stdout END ====
[2024-05-17 03:18:31] 2024-05-17 01:18:31,113 [wrapper] ==== wrapper stderr END ====
[2024-05-17 03:18:31] 2024-05-17 01:18:31,120 [wrapper] apfmon messages muted
[2024-05-17 03:18:31]  *** Error codes and diagnostics ***
[2024-05-17 03:18:31]     "exeErrorCode": 0,
[2024-05-17 03:18:31]     "exeErrorDiag": "",
[2024-05-17 03:18:31]     "pilotErrorCode": 0,
[2024-05-17 03:18:31]     "pilotErrorDiag": "",
[2024-05-17 03:18:31]  *** Listing of results directory ***
[2024-05-17 03:18:31] total 818964
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc    467845 May 15 09:17 pilot3.tar.gz
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc      5633 May 15 09:41 queuedata.json
[2024-05-17 03:18:31] -rwx------ 1 boinc boinc     32251 May 15 09:43 runpilot2-wrapper.sh
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc       100 May 17 02:11 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 03:18:31] -rwxr-xr-x 1 boinc boinc      7986 May 17 02:11 run_atlas
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc       105 May 17 02:11 job.xml
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc      6528 May 17 02:11 init_data.xml
[2024-05-17 03:18:31] -rw-r--r-- 2 boinc boinc 603497724 May 17 02:11 EVNT.38776100._000164.pool.root.1
[2024-05-17 03:18:31] -rw-r--r-- 2 boinc boinc     17537 May 17 02:11 start_atlas.sh
[2024-05-17 03:18:31] drwxrwx--x 2 boinc boinc      4096 May 17 02:11 shared
[2024-05-17 03:18:31] -rw-r--r-- 2 boinc boinc    480000 May 17 02:11 input.tar.gz
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc         0 May 17 02:11 boinc_lockfile
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc      2641 May 17 02:11 pandaJob.out
[2024-05-17 03:18:31] -rw------- 1 boinc boinc       424 May 17 02:11 setup.sh.local
[2024-05-17 03:18:31] -rw------- 1 boinc boinc   1019318 May 17 02:11 agis_schedconf.cvmfs.json
[2024-05-17 03:18:31] -rw------- 1 boinc boinc         0 May 17 02:11 agis_ddmendpoints.agis.ALL.json
[2024-05-17 03:18:31] -rw------- 1 boinc boinc   1324701 May 17 02:11 cric_ddmendpoints.json
[2024-05-17 03:18:31] drwx------ 4 boinc boinc      4096 May 17 02:11 pilot3
[2024-05-17 03:18:31] -rw------- 1 boinc boinc 230046979 May 17 03:17 HITS.38776104._004084.pool.root.1
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc       530 May 17 03:17 boinc_task_state.xml
[2024-05-17 03:18:31] -rw------- 1 boinc boinc      1032 May 17 03:18 memory_monitor_summary.json
[2024-05-17 03:18:31] -rw------- 1 boinc boinc        95 May 17 03:18 pilot_heartbeat.json
[2024-05-17 03:18:31] -rw------- 1 boinc boinc    359959 May 17 03:18 log.38776104._004084.job.log.tgz.1
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc      8192 May 17 03:18 boinc_mmap_file
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc        27 May 17 03:18 wrapper_checkpoint.txt
[2024-05-17 03:18:31] -rw------- 1 boinc boinc      7710 May 17 03:18 heartbeat.json
[2024-05-17 03:18:31] -rw------- 1 boinc boinc      4336 May 17 03:18 pilotlog.txt
[2024-05-17 03:18:31] -rw------- 1 boinc boinc    411966 May 17 03:18 log.38776104._004084.job.log.1
[2024-05-17 03:18:31] -rw------- 1 boinc boinc       357 May 17 03:18 output.list
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc       620 May 17 03:18 runtime_log
[2024-05-17 03:18:31] -rw------- 1 boinc boinc    788480 May 17 03:18 result.tar.gz
[2024-05-17 03:18:31] -rw------- 1 boinc boinc       659 May 17 03:18 tDxKDmWTOR5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmrDJKDmTXffzm.diag
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc     11064 May 17 03:18 runtime_log.err
[2024-05-17 03:18:31] -rw-r--r-- 1 boinc boinc     21747 May 17 03:18 stderr.txt
[2024-05-17 03:18:31] HITS file was successfully produced:
[2024-05-17 03:18:31] -rw------- 1 boinc boinc 230046979 May 17 03:17 shared/HITS.pool.root.1
[2024-05-17 03:18:31]  *** Contents of shared directory: ***
[2024-05-17 03:18:31] total 815284
[2024-05-17 03:18:31] -rw-r--r-- 2 boinc boinc 603497724 May 17 02:11 ATLAS.root_0
[2024-05-17 03:18:31] -rw-r--r-- 2 boinc boinc     17537 May 17 02:11 start_atlas.sh
[2024-05-17 03:18:31] -rw-r--r-- 2 boinc boinc    480000 May 17 02:11 input.tar.gz
[2024-05-17 03:18:31] -rw------- 1 boinc boinc 230046979 May 17 03:17 HITS.pool.root.1
[2024-05-17 03:18:31] -rw------- 1 boinc boinc    788480 May 17 03:18 result.tar.gz
03:18:32 (1551591): run_atlas exited; CPU time 38003.865809
03:18:32 (1551591): called boinc_finish(0)

</stderr_txt>
]]>

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