Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:51:20 (3140000): wrapper (7.7.26015): starting
19:51:20 (3140000): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 19:51:20] Arguments: --nthreads 4
[2024-05-19 19:51:20] Threads: 4
[2024-05-19 19:51:20] Checking for CVMFS
[2024-05-19 19:51:20] No cvmfs_config command found, will try listing directly
[2024-05-19 19:51:20] CVMFS is ok
[2024-05-19 19:51:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 19:51:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 19:51:20] Further information can be found at the LHC@home message board.
[2024-05-19 19:51:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 19:51:20] Checking for apptainer binary...
[2024-05-19 19:51:20] which: no apptainer in ((null))
[2024-05-19 19:51:20] apptainer is not installed, using version from CVMFS
[2024-05-19 19:51:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 19:51:21] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2024-05-19 19:51:21] apptainer works
[2024-05-19 19:51:21] Set ATHENA_PROC_NUMBER=4
[2024-05-19 19:51:21] Set ATHENA_CORE_NUMBER=4
[2024-05-19 19:51:21] Starting ATLAS job with PandaID=6206607601
[2024-05-19 19:51:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 21:48:04]  *** The last 200 lines of the pilot log: ***
[2024-05-19 21:48:04] 2024-05-19 19:47:42,295 | INFO     | intersect: -103348642530.49866
[2024-05-19 21:48:04] 2024-05-19 19:47:42,295 | INFO     | chi2: 1.5495225737369438
[2024-05-19 21:48:04] 2024-05-19 19:47:42,295 | INFO     | current chi2=1.5495225737369438 (change=61.452899982205835 %)
[2024-05-19 21:48:04] 2024-05-19 19:47:42,296 | INFO     | model: linear, x: [1716141723.0, 1716141784.0, 1716141845.0, 1716141906.0, 1716141967.0, 1716142028.0, 1716142089.0, 1716142150.0, 1716142211.0, 1716142272.0, 1716
[2024-05-19 21:48:04] 2024-05-19 19:47:42,296 | INFO     | sum of square deviations: 348769330.0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,296 | INFO     | sum of deviations: 3520080335.0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,296 | INFO     | mean x: 1716144864.5
[2024-05-19 21:48:04] 2024-05-19 19:47:42,296 | INFO     | mean y: 2339338.7884615385
[2024-05-19 21:48:04] 2024-05-19 19:47:42,296 | INFO     | -- intersect: -17318472068.38914
[2024-05-19 21:48:04] 2024-05-19 19:47:42,296 | INFO     | intersect: -17318472068.38914
[2024-05-19 21:48:04] 2024-05-19 19:47:42,297 | INFO     | chi2: 0.04100225880993297
[2024-05-19 21:48:04] 2024-05-19 19:47:42,297 | INFO     | current chi2=0.04100225880993297 (change=97.35387792957098 %)
[2024-05-19 21:48:04] 2024-05-19 19:47:42,297 | INFO     | model: linear, x: [1716142028.0, 1716142089.0, 1716142150.0, 1716142211.0, 1716142272.0, 1716142333.0, 1716142394.0, 1716142455.0, 1716142516.0, 1716142577.0, 1716
[2024-05-19 21:48:04] 2024-05-19 19:47:42,297 | INFO     | sum of square deviations: 300842850.0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,297 | INFO     | sum of deviations: 1163834188.9999998
[2024-05-19 21:48:04] 2024-05-19 19:47:42,298 | INFO     | mean x: 1716145017.0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,298 | INFO     | mean y: 2346652.212121212
[2024-05-19 21:48:04] 2024-05-19 19:47:42,298 | INFO     | -- intersect: -6636695106.854401
[2024-05-19 21:48:04] 2024-05-19 19:47:42,298 | INFO     | intersect: -6636695106.854401
[2024-05-19 21:48:04] 2024-05-19 19:47:42,298 | INFO     | chi2: 0.0003918244300697016
[2024-05-19 21:48:04] 2024-05-19 19:47:42,298 | INFO     | current chi2=0.0003918244300697016 (change=99.04438330608562 %)
[2024-05-19 21:48:04] 2024-05-19 19:47:42,298 | INFO     | model: linear, x: [1716142333.0, 1716142394.0, 1716142455.0, 1716142516.0, 1716142577.0, 1716142638.0, 1716142699.0, 1716142760.0, 1716142821.0, 1716142882.0, 1716
[2024-05-19 21:48:04] 2024-05-19 19:47:42,299 | INFO     | sum of square deviations: 257521107.5
[2024-05-19 21:48:04] 2024-05-19 19:47:42,299 | INFO     | sum of deviations: 783656996.0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,299 | INFO     | mean x: 1716145169.5
[2024-05-19 21:48:04] 2024-05-19 19:47:42,299 | INFO     | mean y: 2347986.723404255
[2024-05-19 21:48:04] 2024-05-19 19:47:42,299 | INFO     | -- intersect: -5220016817.801525
[2024-05-19 21:48:04] 2024-05-19 19:47:42,299 | INFO     | intersect: -5220016817.801525
[2024-05-19 21:48:04] 2024-05-19 19:47:42,299 | INFO     | chi2: 0.00016231928977574546
[2024-05-19 21:48:04] 2024-05-19 19:47:42,300 | INFO     | current chi2=0.00016231928977574546 (change=58.57346369472916 %)
[2024-05-19 21:48:04] 2024-05-19 19:47:42,300 | INFO     | model: linear, x: [1716142638.0, 1716142699.0, 1716142760.0, 1716142821.0, 1716142882.0, 1716142943.0, 1716143004.0, 1716143065.0, 1716143126.0, 1716143187.0, 1716
[2024-05-19 21:48:04] 2024-05-19 19:47:42,300 | INFO     | sum of square deviations: 218571540.0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,300 | INFO     | sum of deviations: 543529154.0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,300 | INFO     | mean x: 1716145322.0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,300 | INFO     | mean y: 2348917.887640449
[2024-05-19 21:48:04] 2024-05-19 19:47:42,300 | INFO     | -- intersect: -4265247014.3536644
[2024-05-19 21:48:04] 2024-05-19 19:47:42,301 | INFO     | intersect: -4265247014.3536644
[2024-05-19 21:48:04] 2024-05-19 19:47:42,301 | INFO     | chi2: 4.772712251270081e-05
[2024-05-19 21:48:04] 2024-05-19 19:47:42,301 | INFO     | current chi2=4.772712251270081e-05 (change=70.59676482158164 %)
[2024-05-19 21:48:04] 2024-05-19 19:47:42,301 | INFO     | model: linear, x: [1716142943.0, 1716143004.0, 1716143065.0, 1716143126.0, 1716143187.0, 1716143248.0, 1716143309.0, 1716143370.0, 1716143431.0, 1716143492.0, 1716
[2024-05-19 21:48:04] 2024-05-19 19:47:42,301 | INFO     | sum of square deviations: 183761585.0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,301 | INFO     | sum of deviations: 418049043.00000006
[2024-05-19 21:48:04] 2024-05-19 19:47:42,302 | INFO     | mean x: 1716145474.5
[2024-05-19 21:48:04] 2024-05-19 19:47:42,302 | INFO     | mean y: 2349468.261904762
[2024-05-19 21:48:04] 2024-05-19 19:47:42,302 | INFO     | -- intersect: -3901801517.7208624
[2024-05-19 21:48:04] 2024-05-19 19:47:42,302 | INFO     | intersect: -3901801517.7208624
[2024-05-19 21:48:04] 2024-05-19 19:47:42,302 | INFO     | chi2: 3.821652771560365e-05
[2024-05-19 21:48:04] 2024-05-19 19:47:42,302 | INFO     | current chi2=3.821652771560365e-05 (change=19.927023244626287 %)
[2024-05-19 21:48:04] 2024-05-19 19:47:42,302 | INFO     | left removable region: 60
[2024-05-19 21:48:04] 2024-05-19 19:47:42,302 | INFO     | model: linear, x: [1716144773.0, 1716144834.0, 1716144895.0, 1716144956.0, 1716145017.0, 1716145078.0, 1716145139.0, 1716145200.0, 1716145261.0, 1716145322.0, 1716
[2024-05-19 21:48:04] 2024-05-19 19:47:42,302 | INFO     | sum of square deviations: 34277852.0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,303 | INFO     | sum of deviations: 34083628.0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,303 | INFO     | mean x: 1716146206.5
[2024-05-19 21:48:04] 2024-05-19 19:47:42,303 | INFO     | mean y: 2351877.625
[2024-05-19 21:48:04] 2024-05-19 19:47:42,303 | INFO     | -- intersect: -1704070359.5664432
[2024-05-19 21:48:04] 2024-05-19 19:47:42,303 | INFO     | intersect: -1704070359.5664432
[2024-05-19 21:48:04] 2024-05-19 19:47:42,303 | INFO     | chi2: 6.24501817521168e-06
[2024-05-19 21:48:04] 2024-05-19 19:47:42,303 | INFO     | -- intersect: -1704070359.5664432
[2024-05-19 21:48:04] 2024-05-19 19:47:42,303 | INFO     | current memory leak: 0.99 B/s (using 48 data points, chi2=0.00)
[2024-05-19 21:48:04] 2024-05-19 19:47:42,304 | INFO     | ..............................
[2024-05-19 21:48:04] 2024-05-19 19:47:42,304 | INFO     | . Timing measurements:
[2024-05-19 21:48:04] 2024-05-19 19:47:42,304 | INFO     | . get job = 0 s
[2024-05-19 21:48:04] 2024-05-19 19:47:42,304 | INFO     | . initial setup = 1 s
[2024-05-19 21:48:04] 2024-05-19 19:47:42,304 | INFO     | . payload setup = 4 s
[2024-05-19 21:48:04] 2024-05-19 19:47:42,304 | INFO     | . stage-in = 0 s
[2024-05-19 21:48:04] 2024-05-19 19:47:42,304 | INFO     | . payload execution = 6942 s
[2024-05-19 21:48:04] 2024-05-19 19:47:42,304 | INFO     | . stage-out = 0 s
[2024-05-19 21:48:04] 2024-05-19 19:47:42,304 | INFO     | . log creation = 0 s
[2024-05-19 21:48:04] 2024-05-19 19:47:42,304 | INFO     | ..............................
[2024-05-19 21:48:04] 2024-05-19 19:47:42,364 | INFO     | 
[2024-05-19 21:48:04] 2024-05-19 19:47:42,365 | INFO     | job summary report
[2024-05-19 21:48:04] 2024-05-19 19:47:42,365 | INFO     | --------------------------------------------------
[2024-05-19 21:48:04] 2024-05-19 19:47:42,365 | INFO     | PanDA job id: 6206607601
[2024-05-19 21:48:04] 2024-05-19 19:47:42,365 | INFO     | task id: 38776104
[2024-05-19 21:48:04] 2024-05-19 19:47:42,365 | INFO     | errors: (none)
[2024-05-19 21:48:04] 2024-05-19 19:47:42,365 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 21:48:04] 2024-05-19 19:47:42,365 | INFO     | pilot state: finished 
[2024-05-19 21:48:04] 2024-05-19 19:47:42,365 | INFO     | transexitcode: 0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,365 | INFO     | exeerrorcode: 0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,365 | INFO     | exeerrordiag: 
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | exitcode: 0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | exitmsg: OK
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | cpuconsumptiontime: 25178 s
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | nevents: 400
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | neventsw: 0
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | pid: 3152786
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | pgrp: 3152786
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | corecount: 4
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | event service: False
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | sizes: {0: 2392163, 4: 2392369, 11: 2392397, 6951: 2419606, 6953: 2428588, 6954: 2428644, 6958: 2428942}
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | --------------------------------------------------
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | 
[2024-05-19 21:48:04] 2024-05-19 19:47:42,366 | INFO     | executing command: ls -lF /scratch/boinc/var/slot68/slots/1
[2024-05-19 21:48:04] 2024-05-19 19:47:42,393 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,393 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,393 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,393 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,393 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,393 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,393 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 21:48:04] 2024-05-19 19:47:42,394 | INFO     | job 6206607601 has completed (purged errors)
[2024-05-19 21:48:04] 2024-05-19 19:47:42,395 | INFO     | overall cleanup function is called
[2024-05-19 21:48:04] 2024-05-19 19:47:43,402 | INFO     | --- collectZombieJob: --- 10, [3152786]
[2024-05-19 21:48:04] 2024-05-19 19:47:43,403 | INFO     | zombie collector waiting for pid 3152786
[2024-05-19 21:48:04] 2024-05-19 19:47:43,403 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 21:48:04] 2024-05-19 19:47:44,408 | INFO     | collected zombie processes
[2024-05-19 21:48:04] 2024-05-19 19:47:44,408 | INFO     | will now attempt to kill all subprocesses of pid=3152786
[2024-05-19 21:48:04] 2024-05-19 19:47:44,630 | INFO     | process IDs to be killed: [3152786] (in reverse order)
[2024-05-19 21:48:04] 2024-05-19 19:47:44,801 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 21:48:04] 2024-05-19 19:47:44,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 21:48:04] 2024-05-19 19:47:44,820 | INFO     | did not find any defunct processes belonging to 3152786
[2024-05-19 21:48:04] 2024-05-19 19:47:44,833 | INFO     | did not find any defunct processes belonging to 3152786
[2024-05-19 21:48:04] 2024-05-19 19:47:44,833 | INFO     | ready for new job
[2024-05-19 21:48:04] 2024-05-19 19:47:44,833 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 21:48:04] 2024-05-19 19:47:44,835 | INFO     | *************************************
[2024-05-19 21:48:04] 2024-05-19 19:47:44,835 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 21:48:04] 2024-05-19 19:47:44,835 | INFO     | *************************************
[2024-05-19 21:48:04] 2024-05-19 19:47:44,835 | INFO     | 
[2024-05-19 21:48:04] 2024-05-19 19:47:44,843 | INFO     | architecture information:
[2024-05-19 21:48:04] 2024-05-19 19:47:44,843 | INFO     | executing command: cat /etc/os-release
[2024-05-19 21:48:04] 2024-05-19 19:47:44,865 | INFO     | cat /etc/os-release:
[2024-05-19 21:48:04] NAME="CentOS Linux"
[2024-05-19 21:48:04] VERSION="7 (Core)"
[2024-05-19 21:48:04] ID="centos"
[2024-05-19 21:48:04] ID_LIKE="rhel fedora"
[2024-05-19 21:48:04] VERSION_ID="7"
[2024-05-19 21:48:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 21:48:04] ANSI_COLOR="0;31"
[2024-05-19 21:48:04] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 21:48:04] HOME_URL="https://www.centos.org/"
[2024-05-19 21:48:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 21:48:04] 
[2024-05-19 21:48:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 21:48:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 21:48:04] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 21:48:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 21:48:04] 
[2024-05-19 21:48:04] 2024-05-19 19:47:44,866 | INFO     | *************************************
[2024-05-19 21:48:04] 2024-05-19 19:47:45,369 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/1
[2024-05-19 21:48:04] 2024-05-19 19:47:45,392 | INFO     | sufficient remaining disk space (2994298945536 B)
[2024-05-19 21:48:04] 2024-05-19 19:47:45,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 21:48:04] 2024-05-19 19:47:45,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 21:48:04] 2024-05-19 19:47:45,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 21:48:04] 2024-05-19 19:47:45,394 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 21:48:04] 2024-05-19 19:47:45,568 | INFO     | all job control threads have been joined
[2024-05-19 21:48:04] 2024-05-19 19:47:45,636 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 21:48:04] 2024-05-19 19:47:45,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 21:48:04] 2024-05-19 19:47:45,636 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 21:48:04] 2024-05-19 19:47:45,806 | INFO     | all data control threads have been joined
[2024-05-19 21:48:04] 2024-05-19 19:47:46,169 | INFO     | all payload control threads have been joined
[2024-05-19 21:48:04] 2024-05-19 19:47:46,236 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 21:48:04] 2024-05-19 19:47:46,237 | INFO     | aborting loop
[2024-05-19 21:48:04] 2024-05-19 19:47:46,398 | INFO     | [job] retrieve thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:46,482 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:46,495 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:46,573 | INFO     | [job] control thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:46,810 | INFO     | [data] control thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:47,111 | INFO     | [payload] validate_post thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:47,174 | INFO     | [payload] control thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:47,239 | INFO     | [job] job monitor thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:47,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 21:48:04] 2024-05-19 19:47:47,400 | INFO     | [data] copytool_out thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:47,409 | INFO     | [payload] failed_post thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:47,521 | INFO     | [data] copytool_in thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:47,692 | INFO     | [job] validate thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:47,850 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:48,384 | INFO     | [job] queue monitor thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:49,399 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:56,069 | INFO     | job.realtimelogging is not enabled
[2024-05-19 21:48:04] 2024-05-19 19:47:57,073 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 21:48:04] 2024-05-19 19:47:58,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 46929833677888)>', '<ExcThread(monitor, started 46930004928256)>']
[2024-05-19 21:48:04] 2024-05-19 19:47:58,699 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 21:48:04] 2024-05-19 19:47:58,700 | INFO     | [monitor] control thread has ended
[2024-05-19 21:48:04] 2024-05-19 19:48:03,487 | INFO     | all workflow threads have been joined
[2024-05-19 21:48:04] 2024-05-19 19:48:03,488 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 21:48:04] 2024-05-19 19:48:03,488 | INFO     | traces error code: 0
[2024-05-19 21:48:04] 2024-05-19 19:48:03,488 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 21:48:04] 2024-05-19 19:48:03,569 [wrapper] ==== pilot stdout END ====
[2024-05-19 21:48:04] 2024-05-19 19:48:03,571 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 21:48:04] 2024-05-19 19:48:03,573 [wrapper] pilotpid: 3144821
[2024-05-19 21:48:04] 2024-05-19 19:48:03,574 [wrapper] Pilot exit status: 0
[2024-05-19 21:48:04] 2024-05-19 19:48:03,582 [wrapper] pandaids: 6206607601
[2024-05-19 21:48:04] 2024-05-19 19:48:03,665 [wrapper] cleanup: SIGTERM to supervisor_pilot 3622816 3144822
[2024-05-19 21:48:04] 2024-05-19 19:48:03,667 [wrapper] Test setup, not cleaning
[2024-05-19 21:48:04] 2024-05-19 19:48:03,668 [wrapper] ==== wrapper stdout END ====
[2024-05-19 21:48:04] 2024-05-19 19:48:03,670 [wrapper] ==== wrapper stderr END ====
[2024-05-19 21:48:04] 2024-05-19 19:48:03,673 [wrapper] apfmon messages muted
[2024-05-19 21:48:04]  *** Error codes and diagnostics ***
[2024-05-19 21:48:04]     "exeErrorCode": 0,
[2024-05-19 21:48:04]     "exeErrorDiag": "",
[2024-05-19 21:48:04]     "pilotErrorCode": 0,
[2024-05-19 21:48:04]     "pilotErrorDiag": "",
[2024-05-19 21:48:04]  *** Listing of results directory ***
[2024-05-19 21:48:04] total 812476
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc    467845 May 15 09:17 pilot3.tar.gz
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc      5633 May 15 09:35 queuedata.json
[2024-05-19 21:48:04] -rwx------ 1 boinc boinc     32251 May 15 09:35 runpilot2-wrapper.sh
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc       100 May 19 19:11 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 21:48:04] -rwxr-xr-x 1 boinc boinc      7986 May 19 19:11 run_atlas
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc       105 May 19 19:11 job.xml
[2024-05-19 21:48:04] -rw-r--r-- 2 boinc boinc 599646181 May 19 19:51 EVNT.38776100._000163.pool.root.1
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc      6644 May 19 19:51 init_data.xml
[2024-05-19 21:48:04] -rw-r--r-- 2 boinc boinc     17537 May 19 19:51 start_atlas.sh
[2024-05-19 21:48:04] drwxrwx--x 2 boinc boinc      4096 May 19 19:51 shared
[2024-05-19 21:48:04] -rw-r--r-- 2 boinc boinc    479999 May 19 19:51 input.tar.gz
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc         0 May 19 19:51 boinc_lockfile
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc      2641 May 19 19:51 pandaJob.out
[2024-05-19 21:48:04] -rw------- 1 boinc boinc       424 May 19 19:51 setup.sh.local
[2024-05-19 21:48:04] -rw------- 1 boinc boinc   1014061 May 19 19:51 agis_schedconf.cvmfs.json
[2024-05-19 21:48:04] -rw------- 1 boinc boinc         0 May 19 19:51 agis_ddmendpoints.agis.ALL.json
[2024-05-19 21:48:04] -rw------- 1 boinc boinc   1324701 May 19 19:51 cric_ddmendpoints.json
[2024-05-19 21:48:04] drwx------ 4 boinc boinc      4096 May 19 19:51 pilot3
[2024-05-19 21:48:04] -rw------- 1 boinc boinc        95 May 19 21:46 pilot_heartbeat.json
[2024-05-19 21:48:04] -rw------- 1 boinc boinc 226832650 May 19 21:47 HITS.38776104._004058.pool.root.1
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc       530 May 19 21:47 boinc_task_state.xml
[2024-05-19 21:48:04] -rw------- 1 boinc boinc      1036 May 19 21:47 memory_monitor_summary.json
[2024-05-19 21:48:04] -rw------- 1 boinc boinc    266938 May 19 21:47 log.38776104._004058.job.log.tgz.1
[2024-05-19 21:48:04] -rw------- 1 boinc boinc      7704 May 19 21:47 heartbeat.json
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc        27 May 19 21:48 wrapper_checkpoint.txt
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc      8192 May 19 21:48 boinc_mmap_file
[2024-05-19 21:48:04] -rw------- 1 boinc boinc      4294 May 19 21:48 pilotlog.txt
[2024-05-19 21:48:04] -rw------- 1 boinc boinc    714200 May 19 21:48 log.38776104._004058.job.log.1
[2024-05-19 21:48:04] -rw------- 1 boinc boinc       357 May 19 21:48 output.list
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc       620 May 19 21:48 runtime_log
[2024-05-19 21:48:04] -rw------- 1 boinc boinc   1003520 May 19 21:48 result.tar.gz
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc     11409 May 19 21:48 runtime_log.err
[2024-05-19 21:48:04] -rw------- 1 boinc boinc       654 May 19 21:48 96FLDmTLOR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmp1NKDmRkLoxn.diag
[2024-05-19 21:48:04] -rw-r--r-- 1 boinc boinc     21324 May 19 21:48 stderr.txt
[2024-05-19 21:48:04] HITS file was successfully produced:
[2024-05-19 21:48:04] -rw------- 1 boinc boinc 226832650 May 19 21:47 shared/HITS.pool.root.1
[2024-05-19 21:48:04]  *** Contents of shared directory: ***
[2024-05-19 21:48:04] total 808592
[2024-05-19 21:48:04] -rw-r--r-- 2 boinc boinc 599646181 May 19 19:51 ATLAS.root_0
[2024-05-19 21:48:04] -rw-r--r-- 2 boinc boinc     17537 May 19 19:51 start_atlas.sh
[2024-05-19 21:48:04] -rw-r--r-- 2 boinc boinc    479999 May 19 19:51 input.tar.gz
[2024-05-19 21:48:04] -rw------- 1 boinc boinc 226832650 May 19 21:47 HITS.pool.root.1
[2024-05-19 21:48:04] -rw------- 1 boinc boinc   1003520 May 19 21:48 result.tar.gz
21:48:05 (3140000): run_atlas exited; CPU time 25032.879226
21:48:05 (3140000): called boinc_finish(0)

</stderr_txt>
]]>

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