Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:02:14 (1475876): wrapper (7.7.26015): starting
01:02:14 (1475876): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 01:02:14] Arguments: --nthreads 12
[2024-05-17 01:02:14] Threads: 12
[2024-05-17 01:02:14] Checking for CVMFS
[2024-05-17 01:02:14] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 01:02:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 01:02:14] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 01:02:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 01:02:15] 2.11.3.0 11199 10873 95036 132817 2 60 42068101 46080001 911 130560 0 12527868 99.942 1742128 34682 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2024-05-17 01:02:15] CVMFS is ok
[2024-05-17 01:02:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 01:02:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 01:02:15] Further information can be found at the LHC@home message board.
[2024-05-17 01:02:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 01:02:15] Checking for apptainer binary...
[2024-05-17 01:02:15] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 01:02:15] Running /usr/bin/apptainer --version
[2024-05-17 01:02:15] apptainer version 1.3.1-1.el7
[2024-05-17 01:02:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 01:02:15] minis01.farm.particle.cz
[2024-05-17 01:02:15] apptainer works
[2024-05-17 01:02:15] Set ATHENA_PROC_NUMBER=12
[2024-05-17 01:02:15] Set ATHENA_CORE_NUMBER=12
[2024-05-17 01:02:15] Starting ATLAS job with PandaID=6206558667
[2024-05-17 01:02:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 02:11:39]  *** The last 200 lines of the pilot log: ***
[2024-05-17 02:11:39]  guid=a6b00e5e-9477-4541-98f9-20ad9ecb21f0
[2024-05-17 02:11:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 02:11:39]  is_tar=False
[2024-05-17 02:11:39]  lfn=log.38776104._003815.job.log.tgz.1
[2024-05-17 02:11:39]  mtime=0
[2024-05-17 02:11:39]  protocol_id=None
[2024-05-17 02:11:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 02:11:39]  replicas=None
[2024-05-17 02:11:39]  scope=mc23_13p6TeV
[2024-05-17 02:11:39]  status=None
[2024-05-17 02:11:39]  status_code=0
[2024-05-17 02:11:39]  storage_token=
[2024-05-17 02:11:39]  surl=/scratch/.boinc/slots/2/PanDA_Pilot-6206558667/log.38776104._003815.job.log.tgz.1
[2024-05-17 02:11:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/36/log.38776104._003815.job.log.tgz.1
[2024-05-17 02:11:39]  workdir=None
[2024-05-17 02:11:39] ]
[2024-05-17 02:11:39] 2024-05-17 00:11:14,758 | INFO     | transferring file log.38776104._003815.job.log.tgz.1 from /scratch/.boinc/slots/2/PanDA_Pilot-6206558667/log.38776104._003815.job.log.tgz.1 to /scratch/.boinc/slot
[2024-05-17 02:11:39] 2024-05-17 00:11:14,759 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/2/PanDA_Pilot-6206558667/log.38776104._003815.job.log.tgz.1 /scratch/.boinc/slots/2/log.38776104._003815.j
[2024-05-17 02:11:39] 2024-05-17 00:11:14,774 | INFO     | adding to output.list: log.38776104._003815.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/36/log.38776104._003815.job.log.tg
[2024-05-17 02:11:39] 2024-05-17 00:11:14,775 | INFO     | summary of transferred files:
[2024-05-17 02:11:39] 2024-05-17 00:11:14,775 | INFO     |  -- lfn=log.38776104._003815.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 02:11:39] 2024-05-17 00:11:14,775 | INFO     | stage-out finished correctly
[2024-05-17 02:11:39] 2024-05-17 00:11:14,796 | INFO     | monitor loop #327: job 0:6206558667 is in state 'finished'
[2024-05-17 02:11:39] 2024-05-17 00:11:14,806 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 02:11:39] 2024-05-17 00:11:17,320 | INFO     | monitor loop #328: job 0:6206558667 is in state 'finished'
[2024-05-17 02:11:39] 2024-05-17 00:11:17,320 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 02:11:39] 2024-05-17 00:11:17,683 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 02:11:39] 2024-05-17 00:11:18,155 | INFO     | job 6206558667 has state=finished
[2024-05-17 02:11:39] 2024-05-17 00:11:18,155 | INFO     | preparing for final server update for job 6206558667 in state='finished'
[2024-05-17 02:11:39] 2024-05-17 00:11:18,156 | INFO     | this job has now completed (state=finished)
[2024-05-17 02:11:39] 2024-05-17 00:11:18,156 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 02:11:39] 2024-05-17 00:11:18,156 | INFO     | job 6206558667 has finished - writing final server update
[2024-05-17 02:11:39] 2024-05-17 00:11:18,156 | INFO     | total number of processed events: 400 (read)
[2024-05-17 02:11:39] 2024-05-17 00:11:18,159 | INFO     | executing command: lscpu
[2024-05-17 02:11:39] 2024-05-17 00:11:18,194 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-05-17 02:11:39] 2024-05-17 00:11:18,194 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 02:11:39] 2024-05-17 00:11:18,234 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 02:11:39] 2024-05-17 00:11:19,823 | INFO     | monitor loop #329: job 0:6206558667 is in state 'finished'
[2024-05-17 02:11:39] 2024-05-17 00:11:19,823 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 02:11:39] 2024-05-17 00:11:22,326 | INFO     | monitor loop #330: job 0:6206558667 is in state 'finished'
[2024-05-17 02:11:39] 2024-05-17 00:11:22,327 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 02:11:39] 2024-05-17 00:11:22,655 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-17 02:11:39] 2024-05-17 00:11:22,656 | INFO     | using path: /scratch/.boinc/slots/2/PanDA_Pilot-6206558667/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 02:11:39] 2024-05-17 00:11:22,657 | INFO     | extracted standard info from prmon json
[2024-05-17 02:11:39] 2024-05-17 00:11:22,657 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 02:11:39] 2024-05-17 00:11:22,657 | WARNING  | GPU info not found in prmon json
[2024-05-17 02:11:39] 2024-05-17 00:11:22,657 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 02:11:39] 2024-05-17 00:11:22,657 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 02:11:39] 2024-05-17 00:11:22,659 | INFO     | fitting pss+swap vs Time
[2024-05-17 02:11:39] 2024-05-17 00:11:22,659 | INFO     | model: linear, x: [1715900876.0, 1715900937.0, 1715900998.0, 1715901059.0, 1715901120.0, 1715901181.0, 1715901242.0, 1715901303.0, 1715901364.0, 1715901425.0, 1715
[2024-05-17 02:11:39] 2024-05-17 00:11:22,660 | INFO     | sum of square deviations: 70364110.0
[2024-05-17 02:11:39] 2024-05-17 00:11:22,660 | INFO     | sum of deviations: 16892100358.0
[2024-05-17 02:11:39] 2024-05-17 00:11:22,660 | INFO     | mean x: 1715902706.0
[2024-05-17 02:11:39] 2024-05-17 00:11:22,660 | INFO     | mean y: 2641921.9836065574
[2024-05-17 02:11:39] 2024-05-17 00:11:22,660 | INFO     | -- intersect: -411928962333.59174
[2024-05-17 02:11:39] 2024-05-17 00:11:22,660 | INFO     | intersect: -411928962333.59174
[2024-05-17 02:11:39] 2024-05-17 00:11:22,661 | INFO     | chi2: 1.5281269411872402
[2024-05-17 02:11:39] 2024-05-17 00:11:22,661 | INFO     | -- intersect: -411928962333.59174
[2024-05-17 02:11:39] 2024-05-17 00:11:22,661 | INFO     | current memory leak: 240.07 B/s (using 61 data points, chi2=1.53)
[2024-05-17 02:11:39] 2024-05-17 00:11:22,661 | INFO     | ..............................
[2024-05-17 02:11:39] 2024-05-17 00:11:22,661 | INFO     | . Timing measurements:
[2024-05-17 02:11:39] 2024-05-17 00:11:22,662 | INFO     | . get job = 0 s
[2024-05-17 02:11:39] 2024-05-17 00:11:22,662 | INFO     | . initial setup = 1 s
[2024-05-17 02:11:39] 2024-05-17 00:11:22,662 | INFO     | . payload setup = 5 s
[2024-05-17 02:11:39] 2024-05-17 00:11:22,662 | INFO     | . stage-in = 0 s
[2024-05-17 02:11:39] 2024-05-17 00:11:22,662 | INFO     | . payload execution = 4103 s
[2024-05-17 02:11:39] 2024-05-17 00:11:22,662 | INFO     | . stage-out = 0 s
[2024-05-17 02:11:39] 2024-05-17 00:11:22,662 | INFO     | . log creation = 0 s
[2024-05-17 02:11:39] 2024-05-17 00:11:22,662 | INFO     | ..............................
[2024-05-17 02:11:39] 2024-05-17 00:11:22,886 | INFO     | 
[2024-05-17 02:11:39] 2024-05-17 00:11:22,886 | INFO     | job summary report
[2024-05-17 02:11:39] 2024-05-17 00:11:22,886 | INFO     | --------------------------------------------------
[2024-05-17 02:11:39] 2024-05-17 00:11:22,886 | INFO     | PanDA job id: 6206558667
[2024-05-17 02:11:39] 2024-05-17 00:11:22,886 | INFO     | task id: 38776104
[2024-05-17 02:11:39] 2024-05-17 00:11:22,886 | INFO     | errors: (none)
[2024-05-17 02:11:39] 2024-05-17 00:11:22,886 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 02:11:39] 2024-05-17 00:11:22,887 | INFO     | pilot state: finished 
[2024-05-17 02:11:39] 2024-05-17 00:11:22,887 | INFO     | transexitcode: 0
[2024-05-17 02:11:39] 2024-05-17 00:11:22,887 | INFO     | exeerrorcode: 0
[2024-05-17 02:11:39] 2024-05-17 00:11:22,887 | INFO     | exeerrordiag: 
[2024-05-17 02:11:39] 2024-05-17 00:11:22,887 | INFO     | exitcode: 0
[2024-05-17 02:11:39] 2024-05-17 00:11:22,887 | INFO     | exitmsg: OK
[2024-05-17 02:11:39] 2024-05-17 00:11:22,887 | INFO     | cpuconsumptiontime: 39922 s
[2024-05-17 02:11:39] 2024-05-17 00:11:22,887 | INFO     | nevents: 400
[2024-05-17 02:11:39] 2024-05-17 00:11:22,887 | INFO     | neventsw: 0
[2024-05-17 02:11:39] 2024-05-17 00:11:22,887 | INFO     | pid: 1487040
[2024-05-17 02:11:39] 2024-05-17 00:11:22,888 | INFO     | pgrp: 1487040
[2024-05-17 02:11:39] 2024-05-17 00:11:22,888 | INFO     | corecount: 12
[2024-05-17 02:11:39] 2024-05-17 00:11:22,888 | INFO     | event service: False
[2024-05-17 02:11:39] 2024-05-17 00:11:22,888 | INFO     | sizes: {0: 2392197, 4: 2392403, 11: 2392431, 4112: 2418397, 4114: 2427359, 4117: 2427415, 4122: 2427713}
[2024-05-17 02:11:39] 2024-05-17 00:11:22,888 | INFO     | --------------------------------------------------
[2024-05-17 02:11:39] 2024-05-17 00:11:22,888 | INFO     | 
[2024-05-17 02:11:39] 2024-05-17 00:11:22,888 | INFO     | executing command: ls -lF /scratch/.boinc/slots/2
[2024-05-17 02:11:39] 2024-05-17 00:11:22,907 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,908 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,908 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,908 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,908 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,908 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,908 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,909 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,909 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,909 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,909 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,909 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,909 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,909 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,909 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,909 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,910 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 02:11:39] 2024-05-17 00:11:22,910 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,910 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 02:11:39] 2024-05-17 00:11:22,910 | INFO     | job 6206558667 has completed (purged errors)
[2024-05-17 02:11:39] 2024-05-17 00:11:22,910 | INFO     | overall cleanup function is called
[2024-05-17 02:11:39] 2024-05-17 00:11:23,917 | INFO     | --- collectZombieJob: --- 10, [1487040]
[2024-05-17 02:11:39] 2024-05-17 00:11:23,917 | INFO     | zombie collector waiting for pid 1487040
[2024-05-17 02:11:39] 2024-05-17 00:11:23,917 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 02:11:39] 2024-05-17 00:11:24,922 | INFO     | collected zombie processes
[2024-05-17 02:11:39] 2024-05-17 00:11:24,922 | INFO     | will now attempt to kill all subprocesses of pid=1487040
[2024-05-17 02:11:39] 2024-05-17 00:11:24,995 | INFO     | process IDs to be killed: [1487040] (in reverse order)
[2024-05-17 02:11:39] 2024-05-17 00:11:25,062 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 02:11:39] 2024-05-17 00:11:25,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 02:11:39] 2024-05-17 00:11:25,066 | INFO     | did not find any defunct processes belonging to 1487040
[2024-05-17 02:11:39] 2024-05-17 00:11:25,072 | INFO     | did not find any defunct processes belonging to 1487040
[2024-05-17 02:11:39] 2024-05-17 00:11:25,072 | INFO     | ready for new job
[2024-05-17 02:11:39] 2024-05-17 00:11:25,072 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 02:11:39] 2024-05-17 00:11:25,073 | INFO     | *************************************
[2024-05-17 02:11:39] 2024-05-17 00:11:25,073 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 02:11:39] 2024-05-17 00:11:25,073 | INFO     | *************************************
[2024-05-17 02:11:39] 2024-05-17 00:11:25,074 | INFO     | 
[2024-05-17 02:11:39] 2024-05-17 00:11:25,075 | INFO     | architecture information:
[2024-05-17 02:11:39] 2024-05-17 00:11:25,076 | INFO     | executing command: cat /etc/os-release
[2024-05-17 02:11:39] 2024-05-17 00:11:25,091 | INFO     | cat /etc/os-release:
[2024-05-17 02:11:39] NAME="CentOS Linux"
[2024-05-17 02:11:39] VERSION="7 (Core)"
[2024-05-17 02:11:39] ID="centos"
[2024-05-17 02:11:39] ID_LIKE="rhel fedora"
[2024-05-17 02:11:39] VERSION_ID="7"
[2024-05-17 02:11:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 02:11:39] ANSI_COLOR="0;31"
[2024-05-17 02:11:39] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 02:11:39] HOME_URL="https://www.centos.org/"
[2024-05-17 02:11:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 02:11:39] 
[2024-05-17 02:11:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 02:11:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 02:11:39] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 02:11:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 02:11:39] 
[2024-05-17 02:11:39] 2024-05-17 00:11:25,091 | INFO     | *************************************
[2024-05-17 02:11:39] 2024-05-17 00:11:25,594 | INFO     | executing command: df -mP /scratch/.boinc/slots/2
[2024-05-17 02:11:39] 2024-05-17 00:11:25,609 | INFO     | sufficient remaining disk space (708913922048 B)
[2024-05-17 02:11:39] 2024-05-17 00:11:25,609 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 02:11:39] 2024-05-17 00:11:25,609 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 02:11:39] 2024-05-17 00:11:25,610 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 02:11:39] 2024-05-17 00:11:25,610 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 02:11:39] 2024-05-17 00:11:25,610 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 02:11:39] 2024-05-17 00:11:25,610 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 02:11:39] 2024-05-17 00:11:25,610 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 02:11:39] 2024-05-17 00:11:25,835 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 02:11:39] 2024-05-17 00:11:25,835 | INFO     | aborting loop
[2024-05-17 02:11:39] 2024-05-17 00:11:26,151 | INFO     | all job control threads have been joined
[2024-05-17 02:11:39] 2024-05-17 00:11:26,609 | INFO     | all payload control threads have been joined
[2024-05-17 02:11:39] 2024-05-17 00:11:26,615 | INFO     | [job] retrieve thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:26,655 | INFO     | all data control threads have been joined
[2024-05-17 02:11:39] 2024-05-17 00:11:26,782 | INFO     | [data] copytool_in thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:26,796 | INFO     | [payload] failed_post thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:26,840 | INFO     | [job] job monitor thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:26,905 | INFO     | [job] validate thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:27,157 | INFO     | [job] control thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:27,185 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:27,235 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:27,392 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:27,610 | INFO     | [payload] control thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:27,611 | INFO     | [data] copytool_out thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:27,660 | INFO     | [data] control thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:27,684 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:27,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 02:11:39] 2024-05-17 00:11:28,158 | INFO     | [payload] validate_post thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:28,277 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 02:11:39] 2024-05-17 00:11:28,781 | INFO     | [job] queue monitor thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:32,283 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 02:11:39] 2024-05-17 00:11:33,788 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140256925103936)>', '<ExcThread(monitor, started 140256376514304)>']
[2024-05-17 02:11:39] 2024-05-17 00:11:34,656 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 02:11:39] 2024-05-17 00:11:34,656 | INFO     | [monitor] control thread has ended
[2024-05-17 02:11:39] 2024-05-17 00:11:38,813 | INFO     | all workflow threads have been joined
[2024-05-17 02:11:39] 2024-05-17 00:11:38,814 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 02:11:39] 2024-05-17 00:11:38,814 | INFO     | traces error code: 0
[2024-05-17 02:11:39] 2024-05-17 00:11:38,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 02:11:39] 2024-05-17 00:11:38,887 [wrapper] ==== pilot stdout END ====
[2024-05-17 02:11:39] 2024-05-17 00:11:38,890 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 02:11:39] 2024-05-17 00:11:38,893 [wrapper] pilotpid: 1480287
[2024-05-17 02:11:39] 2024-05-17 00:11:38,896 [wrapper] Pilot exit status: 0
[2024-05-17 02:11:39] 2024-05-17 00:11:38,907 [wrapper] pandaids: 6206558667
[2024-05-17 02:11:39] 2024-05-17 00:11:38,968 [wrapper] cleanup: SIGTERM to supervisor_pilot 1538623 1480288
[2024-05-17 02:11:39] 2024-05-17 00:11:38,971 [wrapper] Test setup, not cleaning
[2024-05-17 02:11:39] 2024-05-17 00:11:38,973 [wrapper] ==== wrapper stdout END ====
[2024-05-17 02:11:39] 2024-05-17 00:11:38,977 [wrapper] ==== wrapper stderr END ====
[2024-05-17 02:11:39] 2024-05-17 00:11:38,982 [wrapper] apfmon messages muted
[2024-05-17 02:11:39]  *** Error codes and diagnostics ***
[2024-05-17 02:11:39]     "exeErrorCode": 0,
[2024-05-17 02:11:39]     "exeErrorDiag": "",
[2024-05-17 02:11:39]     "pilotErrorCode": 0,
[2024-05-17 02:11:39]     "pilotErrorDiag": "",
[2024-05-17 02:11:39]  *** Listing of results directory ***
[2024-05-17 02:11:39] total 815476
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc    467845 May 15 08:46 pilot3.tar.gz
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc      5633 May 15 08:48 queuedata.json
[2024-05-17 02:11:39] -rwx------ 1 boinc boinc     32251 May 15 08:49 runpilot2-wrapper.sh
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc       100 May 17 01:02 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 02:11:39] -rwxr-xr-x 1 boinc boinc      7986 May 17 01:02 run_atlas
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc       105 May 17 01:02 job.xml
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc      6528 May 17 01:02 init_data.xml
[2024-05-17 02:11:39] -rw-r--r-- 2 boinc boinc 598093046 May 17 01:02 EVNT.38776100._000154.pool.root.1
[2024-05-17 02:11:39] -rw-r--r-- 2 boinc boinc     17537 May 17 01:02 start_atlas.sh
[2024-05-17 02:11:39] drwxrwx--x 2 boinc boinc      4096 May 17 01:02 shared
[2024-05-17 02:11:39] -rw-r--r-- 2 boinc boinc    479999 May 17 01:02 input.tar.gz
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc         0 May 17 01:02 boinc_lockfile
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc      2638 May 17 01:02 pandaJob.out
[2024-05-17 02:11:39] -rw------- 1 boinc boinc       424 May 17 01:02 setup.sh.local
[2024-05-17 02:11:39] -rw------- 1 boinc boinc   1019302 May 17 01:02 agis_schedconf.cvmfs.json
[2024-05-17 02:11:39] -rw------- 1 boinc boinc         0 May 17 01:02 agis_ddmendpoints.agis.ALL.json
[2024-05-17 02:11:39] -rw------- 1 boinc boinc   1324701 May 17 01:02 cric_ddmendpoints.json
[2024-05-17 02:11:39] drwx------ 4 boinc boinc      4096 May 17 01:02 pilot3
[2024-05-17 02:11:39] -rw------- 1 boinc boinc        95 May 17 02:10 pilot_heartbeat.json
[2024-05-17 02:11:39] -rw------- 1 boinc boinc 231886396 May 17 02:10 HITS.38776104._003815.pool.root.1
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc       530 May 17 02:10 boinc_task_state.xml
[2024-05-17 02:11:39] -rw------- 1 boinc boinc      1032 May 17 02:11 memory_monitor_summary.json
[2024-05-17 02:11:39] -rw------- 1 boinc boinc    342241 May 17 02:11 log.38776104._003815.job.log.tgz.1
[2024-05-17 02:11:39] -rw------- 1 boinc boinc      7710 May 17 02:11 heartbeat.json
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc      8192 May 17 02:11 boinc_mmap_file
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc        27 May 17 02:11 wrapper_checkpoint.txt
[2024-05-17 02:11:39] -rw------- 1 boinc boinc      4336 May 17 02:11 pilotlog.txt
[2024-05-17 02:11:39] -rw------- 1 boinc boinc    425439 May 17 02:11 log.38776104._003815.job.log.1
[2024-05-17 02:11:39] -rw------- 1 boinc boinc       357 May 17 02:11 output.list
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc       620 May 17 02:11 runtime_log
[2024-05-17 02:11:39] -rw------- 1 boinc boinc    788480 May 17 02:11 result.tar.gz
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc     11064 May 17 02:11 runtime_log.err
[2024-05-17 02:11:39] -rw------- 1 boinc boinc       659 May 17 02:11 nBiLDmHdNR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmlyNKDmk37l4n.diag
[2024-05-17 02:11:39] -rw-r--r-- 1 boinc boinc     21565 May 17 02:11 stderr.txt
[2024-05-17 02:11:39] HITS file was successfully produced:
[2024-05-17 02:11:39] -rw------- 1 boinc boinc 231886396 May 17 02:10 shared/HITS.pool.root.1
[2024-05-17 02:11:39]  *** Contents of shared directory: ***
[2024-05-17 02:11:39] total 811800
[2024-05-17 02:11:39] -rw-r--r-- 2 boinc boinc 598093046 May 17 01:02 ATLAS.root_0
[2024-05-17 02:11:39] -rw-r--r-- 2 boinc boinc     17537 May 17 01:02 start_atlas.sh
[2024-05-17 02:11:39] -rw-r--r-- 2 boinc boinc    479999 May 17 01:02 input.tar.gz
[2024-05-17 02:11:39] -rw------- 1 boinc boinc 231886396 May 17 02:10 HITS.pool.root.1
[2024-05-17 02:11:39] -rw------- 1 boinc boinc    788480 May 17 02:11 result.tar.gz
02:11:40 (1475876): run_atlas exited; CPU time 39654.699460
02:11:40 (1475876): called boinc_finish(0)

</stderr_txt>
]]>

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