Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:04:59 (905687): wrapper (7.7.26015): starting
16:04:59 (905687): wrapper: running run_atlas (--nthreads 12)
[2024-05-16 16:04:59] Arguments: --nthreads 12
[2024-05-16 16:04:59] Threads: 12
[2024-05-16 16:04:59] Checking for CVMFS
[2024-05-16 16:05:00] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-16 16:05:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-16 16:05:00] Running cvmfs_config stat atlas.cern.ch
[2024-05-16 16:05:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-16 16:05:00] 2.11.3.0 11199 10336 95572 132800 2 61 41567465 46080000 911 130560 0 11582506 99.937 1612987 33575 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2024-05-16 16:05:00] CVMFS is ok
[2024-05-16 16:05:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-16 16:05:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-16 16:05:00] Further information can be found at the LHC@home message board.
[2024-05-16 16:05:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-16 16:05:00] Checking for apptainer binary...
[2024-05-16 16:05:00] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-16 16:05:00] Running /usr/bin/apptainer --version
[2024-05-16 16:05:00] apptainer version 1.3.1-1.el7
[2024-05-16 16:05:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-16 16:05:00] minis01.farm.particle.cz
[2024-05-16 16:05:00] apptainer works
[2024-05-16 16:05:00] Set ATHENA_PROC_NUMBER=12
[2024-05-16 16:05:00] Set ATHENA_CORE_NUMBER=12
[2024-05-16 16:05:00] Starting ATLAS job with PandaID=6206405961
[2024-05-16 16:05:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 17:12:36]  *** The last 200 lines of the pilot log: ***
[2024-05-16 17:12:36]  direct_access_lan=False
[2024-05-16 17:12:36]  direct_access_wan=False
[2024-05-16 17:12:36]  domain=
[2024-05-16 17:12:36]  filesize=348153
[2024-05-16 17:12:36]  filetype=log
[2024-05-16 17:12:36]  guid=e704788f-62b4-4ea4-8ed8-3a75cb7cd39a
[2024-05-16 17:12:36]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-16 17:12:36]  is_tar=False
[2024-05-16 17:12:36]  lfn=log.38776104._003530.job.log.tgz.1
[2024-05-16 17:12:36]  mtime=0
[2024-05-16 17:12:36]  protocol_id=None
[2024-05-16 17:12:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-16 17:12:36]  replicas=None
[2024-05-16 17:12:36]  scope=mc23_13p6TeV
[2024-05-16 17:12:36]  status=None
[2024-05-16 17:12:36]  status_code=0
[2024-05-16 17:12:36]  storage_token=
[2024-05-16 17:12:36]  surl=/scratch/.boinc/slots/1/PanDA_Pilot-6206405961/log.38776104._003530.job.log.tgz.1
[2024-05-16 17:12:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/37/log.38776104._003530.job.log.tgz.1
[2024-05-16 17:12:36]  workdir=None
[2024-05-16 17:12:36] ]
[2024-05-16 17:12:36] 2024-05-16 15:12:20,407 | INFO     | transferring file log.38776104._003530.job.log.tgz.1 from /scratch/.boinc/slots/1/PanDA_Pilot-6206405961/log.38776104._003530.job.log.tgz.1 to /scratch/.boinc/slot
[2024-05-16 17:12:36] 2024-05-16 15:12:20,408 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/1/PanDA_Pilot-6206405961/log.38776104._003530.job.log.tgz.1 /scratch/.boinc/slots/1/log.38776104._003530.j
[2024-05-16 17:12:36] 2024-05-16 15:12:20,421 | INFO     | adding to output.list: log.38776104._003530.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/37/log.38776104._003530.job.log.tg
[2024-05-16 17:12:36] 2024-05-16 15:12:20,422 | INFO     | summary of transferred files:
[2024-05-16 17:12:36] 2024-05-16 15:12:20,422 | INFO     |  -- lfn=log.38776104._003530.job.log.tgz.1, status_code=0, status=transferred
[2024-05-16 17:12:36] 2024-05-16 15:12:20,422 | INFO     | stage-out finished correctly
[2024-05-16 17:12:36] 2024-05-16 15:12:20,490 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-16 17:12:36] 2024-05-16 15:12:20,616 | INFO     | job 6206405961 has state=finished
[2024-05-16 17:12:36] 2024-05-16 15:12:20,617 | INFO     | preparing for final server update for job 6206405961 in state='finished'
[2024-05-16 17:12:36] 2024-05-16 15:12:20,617 | INFO     | this job has now completed (state=finished)
[2024-05-16 17:12:36] 2024-05-16 15:12:20,617 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-16 17:12:36] 2024-05-16 15:12:20,618 | INFO     | job 6206405961 has finished - writing final server update
[2024-05-16 17:12:36] 2024-05-16 15:12:20,618 | INFO     | total number of processed events: 400 (read)
[2024-05-16 17:12:36] 2024-05-16 15:12:20,620 | INFO     | executing command: lscpu
[2024-05-16 17:12:36] 2024-05-16 15:12:20,642 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-05-16 17:12:36] 2024-05-16 15:12:20,642 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-16 17:12:36] 2024-05-16 15:12:20,672 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-16 17:12:36] 2024-05-16 15:12:21,969 | INFO     | monitor loop #321: job 0:6206405961 is in state 'finished'
[2024-05-16 17:12:36] 2024-05-16 15:12:21,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 17:12:36] 2024-05-16 15:12:24,473 | INFO     | monitor loop #322: job 0:6206405961 is in state 'finished'
[2024-05-16 17:12:36] 2024-05-16 15:12:24,473 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 17:12:36] 2024-05-16 15:12:24,563 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-16 17:12:36] 2024-05-16 15:12:24,564 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6206405961/memory_monitor_summary.json (trf name=prmon)
[2024-05-16 17:12:36] 2024-05-16 15:12:24,565 | INFO     | extracted standard info from prmon json
[2024-05-16 17:12:36] 2024-05-16 15:12:24,566 | INFO     | extracted standard memory fields from prmon json
[2024-05-16 17:12:36] 2024-05-16 15:12:24,566 | WARNING  | GPU info not found in prmon json
[2024-05-16 17:12:36] 2024-05-16 15:12:24,566 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-16 17:12:36] 2024-05-16 15:12:24,567 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-16 17:12:36] 2024-05-16 15:12:24,569 | INFO     | fitting pss+swap vs Time
[2024-05-16 17:12:36] 2024-05-16 15:12:24,570 | INFO     | model: linear, x: [1715868641.0, 1715868702.0, 1715868763.0, 1715868824.0, 1715868885.0, 1715868946.0, 1715869007.0, 1715869068.0, 1715869129.0, 1715869190.0, 1715
[2024-05-16 17:12:36] 2024-05-16 15:12:24,570 | INFO     | sum of square deviations: 63666310.0
[2024-05-16 17:12:36] 2024-05-16 15:12:24,570 | INFO     | sum of deviations: 13564605746.0
[2024-05-16 17:12:36] 2024-05-16 15:12:24,571 | INFO     | mean x: 1715870410.0
[2024-05-16 17:12:36] 2024-05-16 15:12:24,571 | INFO     | mean y: 2611059.254237288
[2024-05-16 17:12:36] 2024-05-16 15:12:24,571 | INFO     | -- intersect: -365577012180.6882
[2024-05-16 17:12:36] 2024-05-16 15:12:24,571 | INFO     | intersect: -365577012180.6882
[2024-05-16 17:12:36] 2024-05-16 15:12:24,571 | INFO     | chi2: 1.5130904828669725
[2024-05-16 17:12:36] 2024-05-16 15:12:24,572 | INFO     | -- intersect: -365577012180.6882
[2024-05-16 17:12:36] 2024-05-16 15:12:24,572 | INFO     | current memory leak: 213.06 B/s (using 59 data points, chi2=1.51)
[2024-05-16 17:12:36] 2024-05-16 15:12:24,572 | INFO     | ..............................
[2024-05-16 17:12:36] 2024-05-16 15:12:24,573 | INFO     | . Timing measurements:
[2024-05-16 17:12:36] 2024-05-16 15:12:24,573 | INFO     | . get job = 0 s
[2024-05-16 17:12:36] 2024-05-16 15:12:24,573 | INFO     | . initial setup = 1 s
[2024-05-16 17:12:36] 2024-05-16 15:12:24,573 | INFO     | . payload setup = 5 s
[2024-05-16 17:12:36] 2024-05-16 15:12:24,573 | INFO     | . stage-in = 0 s
[2024-05-16 17:12:36] 2024-05-16 15:12:24,573 | INFO     | . payload execution = 4002 s
[2024-05-16 17:12:36] 2024-05-16 15:12:24,573 | INFO     | . stage-out = 0 s
[2024-05-16 17:12:36] 2024-05-16 15:12:24,574 | INFO     | . log creation = 0 s
[2024-05-16 17:12:36] 2024-05-16 15:12:24,574 | INFO     | ..............................
[2024-05-16 17:12:36] 2024-05-16 15:12:24,873 | INFO     | 
[2024-05-16 17:12:36] 2024-05-16 15:12:24,873 | INFO     | job summary report
[2024-05-16 17:12:36] 2024-05-16 15:12:24,873 | INFO     | --------------------------------------------------
[2024-05-16 17:12:36] 2024-05-16 15:12:24,873 | INFO     | PanDA job id: 6206405961
[2024-05-16 17:12:36] 2024-05-16 15:12:24,873 | INFO     | task id: 38776104
[2024-05-16 17:12:36] 2024-05-16 15:12:24,873 | INFO     | errors: (none)
[2024-05-16 17:12:36] 2024-05-16 15:12:24,873 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 17:12:36] 2024-05-16 15:12:24,874 | INFO     | pilot state: finished 
[2024-05-16 17:12:36] 2024-05-16 15:12:24,874 | INFO     | transexitcode: 0
[2024-05-16 17:12:36] 2024-05-16 15:12:24,874 | INFO     | exeerrorcode: 0
[2024-05-16 17:12:36] 2024-05-16 15:12:24,874 | INFO     | exeerrordiag: 
[2024-05-16 17:12:36] 2024-05-16 15:12:24,874 | INFO     | exitcode: 0
[2024-05-16 17:12:36] 2024-05-16 15:12:24,874 | INFO     | exitmsg: OK
[2024-05-16 17:12:36] 2024-05-16 15:12:24,874 | INFO     | cpuconsumptiontime: 38433 s
[2024-05-16 17:12:36] 2024-05-16 15:12:24,874 | INFO     | nevents: 400
[2024-05-16 17:12:36] 2024-05-16 15:12:24,874 | INFO     | neventsw: 0
[2024-05-16 17:12:36] 2024-05-16 15:12:24,875 | INFO     | pid: 917347
[2024-05-16 17:12:36] 2024-05-16 15:12:24,875 | INFO     | pgrp: 917347
[2024-05-16 17:12:36] 2024-05-16 15:12:24,875 | INFO     | corecount: 12
[2024-05-16 17:12:36] 2024-05-16 15:12:24,875 | INFO     | event service: False
[2024-05-16 17:12:36] 2024-05-16 15:12:24,875 | INFO     | sizes: {0: 2392203, 1: 2392231, 5: 2392437, 11: 2392493, 4011: 2418309, 4014: 2427455, 4018: 2427569}
[2024-05-16 17:12:36] 2024-05-16 15:12:24,875 | INFO     | --------------------------------------------------
[2024-05-16 17:12:36] 2024-05-16 15:12:24,875 | INFO     | 
[2024-05-16 17:12:36] 2024-05-16 15:12:24,875 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2024-05-16 17:12:36] 2024-05-16 15:12:24,891 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,892 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,893 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,893 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,893 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 17:12:36] 2024-05-16 15:12:24,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,893 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 17:12:36] 2024-05-16 15:12:24,893 | INFO     | job 6206405961 has completed (purged errors)
[2024-05-16 17:12:36] 2024-05-16 15:12:24,893 | INFO     | overall cleanup function is called
[2024-05-16 17:12:36] 2024-05-16 15:12:25,900 | INFO     | --- collectZombieJob: --- 10, [917347]
[2024-05-16 17:12:36] 2024-05-16 15:12:25,900 | INFO     | zombie collector waiting for pid 917347
[2024-05-16 17:12:36] 2024-05-16 15:12:25,900 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 17:12:36] 2024-05-16 15:12:26,905 | INFO     | collected zombie processes
[2024-05-16 17:12:36] 2024-05-16 15:12:26,905 | INFO     | will now attempt to kill all subprocesses of pid=917347
[2024-05-16 17:12:36] 2024-05-16 15:12:26,984 | INFO     | process IDs to be killed: [917347] (in reverse order)
[2024-05-16 17:12:36] 2024-05-16 15:12:27,035 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 17:12:36] 2024-05-16 15:12:27,035 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 17:12:36] 2024-05-16 15:12:27,039 | INFO     | did not find any defunct processes belonging to 917347
[2024-05-16 17:12:36] 2024-05-16 15:12:27,043 | INFO     | did not find any defunct processes belonging to 917347
[2024-05-16 17:12:36] 2024-05-16 15:12:27,043 | INFO     | ready for new job
[2024-05-16 17:12:36] 2024-05-16 15:12:27,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 17:12:36] 2024-05-16 15:12:27,044 | INFO     | *************************************
[2024-05-16 17:12:36] 2024-05-16 15:12:27,044 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 17:12:36] 2024-05-16 15:12:27,044 | INFO     | *************************************
[2024-05-16 17:12:36] 2024-05-16 15:12:27,044 | INFO     | 
[2024-05-16 17:12:36] 2024-05-16 15:12:27,045 | INFO     | architecture information:
[2024-05-16 17:12:36] 2024-05-16 15:12:27,045 | INFO     | executing command: cat /etc/os-release
[2024-05-16 17:12:36] 2024-05-16 15:12:27,058 | INFO     | cat /etc/os-release:
[2024-05-16 17:12:36] NAME="CentOS Linux"
[2024-05-16 17:12:36] VERSION="7 (Core)"
[2024-05-16 17:12:36] ID="centos"
[2024-05-16 17:12:36] ID_LIKE="rhel fedora"
[2024-05-16 17:12:36] VERSION_ID="7"
[2024-05-16 17:12:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 17:12:36] ANSI_COLOR="0;31"
[2024-05-16 17:12:36] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 17:12:36] HOME_URL="https://www.centos.org/"
[2024-05-16 17:12:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 17:12:36] 
[2024-05-16 17:12:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 17:12:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 17:12:36] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 17:12:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 17:12:36] 
[2024-05-16 17:12:36] 2024-05-16 15:12:27,059 | INFO     | *************************************
[2024-05-16 17:12:36] 2024-05-16 15:12:27,561 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2024-05-16 17:12:36] 2024-05-16 15:12:27,574 | INFO     | sufficient remaining disk space (711667482624 B)
[2024-05-16 17:12:36] 2024-05-16 15:12:27,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 17:12:36] 2024-05-16 15:12:27,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 17:12:36] 2024-05-16 15:12:27,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 17:12:36] 2024-05-16 15:12:27,803 | INFO     | all payload control threads have been joined
[2024-05-16 17:12:36] 2024-05-16 15:12:27,981 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 17:12:36] 2024-05-16 15:12:27,981 | INFO     | aborting loop
[2024-05-16 17:12:36] 2024-05-16 15:12:28,273 | INFO     | all data control threads have been joined
[2024-05-16 17:12:36] 2024-05-16 15:12:28,415 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 17:12:36] 2024-05-16 15:12:28,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 17:12:36] 2024-05-16 15:12:28,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 17:12:36] 2024-05-16 15:12:28,500 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 17:12:36] 2024-05-16 15:12:28,542 | INFO     | all job control threads have been joined
[2024-05-16 17:12:36] 2024-05-16 15:12:28,580 | INFO     | [job] retrieve thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:28,777 | INFO     | [job] validate thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:28,809 | INFO     | [payload] control thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:28,813 | INFO     | [payload] validate_post thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:28,986 | INFO     | [job] job monitor thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:29,193 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:29,279 | INFO     | [data] control thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:29,308 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:29,548 | INFO     | [job] control thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:29,613 | INFO     | [data] copytool_in thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:29,636 | INFO     | [payload] failed_post thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:29,643 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:29,718 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 17:12:36] 2024-05-16 15:12:29,853 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:30,505 | INFO     | [data] copytool_out thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:30,724 | INFO     | [job] queue monitor thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:31,580 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 17:12:36] 2024-05-16 15:12:31,610 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140365176731456)>', '<ExcThread(monitor, started 140364740544256)>']
[2024-05-16 17:12:36] 2024-05-16 15:12:32,436 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 17:12:36] 2024-05-16 15:12:32,436 | INFO     | [monitor] control thread has ended
[2024-05-16 17:12:36] 2024-05-16 15:12:36,635 | INFO     | all workflow threads have been joined
[2024-05-16 17:12:36] 2024-05-16 15:12:36,635 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 17:12:36] 2024-05-16 15:12:36,636 | INFO     | traces error code: 0
[2024-05-16 17:12:36] 2024-05-16 15:12:36,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 17:12:36] 2024-05-16 15:12:36,718 [wrapper] ==== pilot stdout END ====
[2024-05-16 17:12:36] 2024-05-16 15:12:36,721 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 17:12:36] 2024-05-16 15:12:36,723 [wrapper] pilotpid: 910592
[2024-05-16 17:12:36] 2024-05-16 15:12:36,726 [wrapper] Pilot exit status: 0
[2024-05-16 17:12:36] 2024-05-16 15:12:36,734 [wrapper] pandaids: 6206405961
[2024-05-16 17:12:36] 2024-05-16 15:12:36,779 [wrapper] cleanup: SIGTERM to supervisor_pilot  967849 910593
[2024-05-16 17:12:36] 2024-05-16 15:12:36,781 [wrapper] Test setup, not cleaning
[2024-05-16 17:12:36] 2024-05-16 15:12:36,783 [wrapper] ==== wrapper stdout END ====
[2024-05-16 17:12:36] 2024-05-16 15:12:36,786 [wrapper] ==== wrapper stderr END ====
[2024-05-16 17:12:36] 2024-05-16 15:12:36,790 [wrapper] apfmon messages muted
[2024-05-16 17:12:36]  *** Error codes and diagnostics ***
[2024-05-16 17:12:36]     "exeErrorCode": 0,
[2024-05-16 17:12:36]     "exeErrorDiag": "",
[2024-05-16 17:12:36]     "pilotErrorCode": 0,
[2024-05-16 17:12:36]     "pilotErrorDiag": "",
[2024-05-16 17:12:36]  *** Listing of results directory ***
[2024-05-16 17:12:36] total 818172
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc    467845 May 15 03:17 pilot3.tar.gz
[2024-05-16 17:12:36] -rwx------ 1 boinc boinc     32251 May 15 03:57 runpilot2-wrapper.sh
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc      5633 May 15 03:57 queuedata.json
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc       100 May 16 16:04 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 17:12:36] -rwxr-xr-x 1 boinc boinc      7986 May 16 16:04 run_atlas
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc       105 May 16 16:04 job.xml
[2024-05-16 17:12:36] -rw-r--r-- 2 boinc boinc 599652742 May 16 16:04 EVNT.38776100._000146.pool.root.1
[2024-05-16 17:12:36] -rw-r--r-- 2 boinc boinc     17537 May 16 16:04 start_atlas.sh
[2024-05-16 17:12:36] drwxrwx--x 2 boinc boinc      4096 May 16 16:04 shared
[2024-05-16 17:12:36] -rw-r--r-- 2 boinc boinc    480002 May 16 16:04 input.tar.gz
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc      6528 May 16 16:04 init_data.xml
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc         0 May 16 16:04 boinc_lockfile
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc      2641 May 16 16:05 pandaJob.out
[2024-05-16 17:12:36] -rw------- 1 boinc boinc       424 May 16 16:05 setup.sh.local
[2024-05-16 17:12:36] -rw------- 1 boinc boinc   1014167 May 16 16:05 agis_schedconf.cvmfs.json
[2024-05-16 17:12:36] -rw------- 1 boinc boinc         0 May 16 16:05 agis_ddmendpoints.agis.ALL.json
[2024-05-16 17:12:36] -rw------- 1 boinc boinc   1324701 May 16 16:05 cric_ddmendpoints.json
[2024-05-16 17:12:36] drwx------ 4 boinc boinc      4096 May 16 16:05 pilot3
[2024-05-16 17:12:36] -rw------- 1 boinc boinc 233094099 May 16 17:11 HITS.38776104._003530.pool.root.1
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc      8192 May 16 17:12 boinc_mmap_file
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc        27 May 16 17:12 wrapper_checkpoint.txt
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc       530 May 16 17:12 boinc_task_state.xml
[2024-05-16 17:12:36] -rw------- 1 boinc boinc      1028 May 16 17:12 memory_monitor_summary.json
[2024-05-16 17:12:36] -rw------- 1 boinc boinc    348153 May 16 17:12 log.38776104._003530.job.log.tgz.1
[2024-05-16 17:12:36] -rw------- 1 boinc boinc        95 May 16 17:12 pilot_heartbeat.json
[2024-05-16 17:12:36] -rw------- 1 boinc boinc      7707 May 16 17:12 heartbeat.json
[2024-05-16 17:12:36] -rw------- 1 boinc boinc      4213 May 16 17:12 pilotlog.txt
[2024-05-16 17:12:36] -rw------- 1 boinc boinc    416912 May 16 17:12 log.38776104._003530.job.log.1
[2024-05-16 17:12:36] -rw------- 1 boinc boinc       357 May 16 17:12 output.list
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc       620 May 16 17:12 runtime_log
[2024-05-16 17:12:36] -rw------- 1 boinc boinc    788480 May 16 17:12 result.tar.gz
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc     11064 May 16 17:12 runtime_log.err
[2024-05-16 17:12:36] -rw------- 1 boinc boinc       659 May 16 17:12 B4MODmf4IR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmaeNKDmjYffcn.diag
[2024-05-16 17:12:36] -rw-r--r-- 1 boinc boinc     21087 May 16 17:12 stderr.txt
[2024-05-16 17:12:36] HITS file was successfully produced:
[2024-05-16 17:12:36] -rw------- 1 boinc boinc 233094099 May 16 17:11 shared/HITS.pool.root.1
[2024-05-16 17:12:36]  *** Contents of shared directory: ***
[2024-05-16 17:12:36] total 814504
[2024-05-16 17:12:36] -rw-r--r-- 2 boinc boinc 599652742 May 16 16:04 ATLAS.root_0
[2024-05-16 17:12:36] -rw-r--r-- 2 boinc boinc     17537 May 16 16:04 start_atlas.sh
[2024-05-16 17:12:36] -rw-r--r-- 2 boinc boinc    480002 May 16 16:04 input.tar.gz
[2024-05-16 17:12:36] -rw------- 1 boinc boinc 233094099 May 16 17:11 HITS.pool.root.1
[2024-05-16 17:12:36] -rw------- 1 boinc boinc    788480 May 16 17:12 result.tar.gz
17:12:38 (905687): run_atlas exited; CPU time 38214.856798
17:12:38 (905687): called boinc_finish(0)

</stderr_txt>
]]>

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