Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-19 18:17:36 (7140): Detected: vboxwrapper 26206
2024-05-19 18:17:36 (7140): Detected: BOINC client v7.24.1
2024-05-19 18:17:36 (7140): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-05-19 18:17:37 (7140): Successfully copied 'init_data.xml' to the shared directory.
2024-05-19 18:17:37 (7140): Create VM. (boinc_0fe31b10c9a9ae67, slot#0)
2024-05-19 18:17:38 (7140): Setting Memory Size for VM. (4200MB)
2024-05-19 18:17:38 (7140): Setting CPU Count for VM. (2)
2024-05-19 18:17:38 (7140): Setting Chipset Options for VM.
2024-05-19 18:17:38 (7140): Setting Graphics Controller Options for VM.
2024-05-19 18:17:39 (7140): Setting Boot Options for VM.
2024-05-19 18:17:39 (7140): Setting Network Configuration for NAT.
2024-05-19 18:17:39 (7140): Enabling VM Network Access.
2024-05-19 18:17:39 (7140): Disabling USB Support for VM.
2024-05-19 18:17:40 (7140): Disabling COM Port Support for VM.
2024-05-19 18:17:40 (7140): Disabling LPT Port Support for VM.
2024-05-19 18:17:40 (7140): Disabling Audio Support for VM.
2024-05-19 18:17:41 (7140): Disabling Clipboard Support for VM.
2024-05-19 18:17:41 (7140): Disabling Drag and Drop Support for VM.
2024-05-19 18:17:41 (7140): Adding storage controller(s) to VM.
2024-05-19 18:17:41 (7140): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-19 18:17:44 (7140): Adding VirtualBox Guest Additions to VM.
2024-05-19 18:17:44 (7140): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-19 18:17:45 (7140): forwarding host port 49953 to guest port 80
2024-05-19 18:17:45 (7140): Enabling remote desktop for VM.
2024-05-19 18:17:45 (7140): Required extension pack not installed, remote desktop not enabled.
2024-05-19 18:17:45 (7140): Enabling shared directory for VM.
2024-05-19 18:17:46 (7140): Starting VM using VBoxManage interface. (boinc_0fe31b10c9a9ae67, slot#0)
2024-05-19 18:17:51 (7140): Successfully started VM. (PID = '10912')
2024-05-19 18:17:51 (7140): Reporting VM Process ID to BOINC.
2024-05-19 18:17:51 (7140): Guest Log: BIOS: VirtualBox 7.0.14
2024-05-19 18:17:51 (7140): Guest Log: CPUID EDX: 0x178bfbff
2024-05-19 18:17:51 (7140): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-19 18:17:51 (7140): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-19 18:17:51 (7140): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-19 18:17:51 (7140): Detected: Web Application Enabled (http://localhost:49953)
2024-05-19 18:17:51 (7140): Preference change detected
2024-05-19 18:17:51 (7140): Setting CPU throttle for VM. (100%)
2024-05-19 18:17:51 (7140): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-19 18:17:53 (7140): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-19 18:17:53 (7140): Guest Log: BIOS: Booting from Hard Disk...
2024-05-19 18:17:55 (7140): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-19 18:17:55 (7140): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-19 18:17:55 (7140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-19 18:17:59 (7140): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-19 18:17:59 (7140): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-19 18:18:04 (7140): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-19 18:18:04 (7140): Guest Log: 00:00:00.000072 main     Log opened 2024-05-19T18:18:02.191232000Z
2024-05-19 18:18:04 (7140): Guest Log: 00:00:00.000139 main     OS Product: Linux
2024-05-19 18:18:04 (7140): Guest Log: 00:00:00.000161 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-19 18:18:04 (7140): Guest Log: 00:00:00.000179 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-19 18:18:04 (7140): Guest Log: 00:00:00.000197 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-19 18:18:04 (7140): Guest Log: 00:00:00.000197 main     Process ID: 1274
2024-05-19 18:18:04 (7140): Guest Log: 00:00:00.000198 main     Package type: LINUX_64BITS_GENERIC
2024-05-19 18:18:04 (7140): Guest Log: 00:00:00.000925 main     5.2.32 r132073 started. Verbose level = 0
2024-05-19 18:18:04 (7140): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-19 18:18:04 (7140): Guest Log: [INFO] Mounting shared directory
2024-05-19 18:18:04 (7140): Guest Log: [INFO] Checking for init_data.xml
2024-05-19 18:18:08 (7140): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-19 18:18:08 (7140): Guest Log: [INFO] Detected branch: prod
2024-05-19 18:18:09 (7140): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-19 18:18:09 (7140): Guest Log: Copying input files
2024-05-19 18:18:11 (7140): Guest Log: Copied input files into RunAtlas.
2024-05-19 18:18:11 (7140): Guest Log: Detected user-configured HTTP proxy at http://192.168.5.5:3128 - will set in /etc/cvmfs/default.local
2024-05-19 18:18:14 (7140): Guest Log: 00:00:10.015187 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 379 540 000ns (GuestNow=1 716 135 493 814 771 000 ns GuestLast=1 716 142 682 194 311 000 ns fSetTimeLastLoop=true )
2024-05-19 18:18:19 (7140): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-19 18:18:19 (7140): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-19 18:18:19 (7140): Guest Log: 2.6.3.0 1549 0 29504 132919 4 1 3116989 4096000 0 65024 0 0 n/a 1 1 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.5.5:3128 1
2024-05-19 18:18:20 (7140): Guest Log: copied the webapp to /var/www
2024-05-19 18:18:20 (7140): Guest Log: ATHENA_PROC_NUMBER=2
2024-05-19 18:18:20 (7140): Guest Log: ATHENA_CORE_NUMBER=2
2024-05-19 18:18:20 (7140): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-19 18:18:20 (7140): Guest Log:  *** Starting ATLAS job. (PandaID=6206320159 taskID=38776125) ***
2024-05-19 19:57:54 (7140): Status Report: Elapsed Time: '6000.000000'
2024-05-19 19:57:54 (7140): Status Report: CPU Time: '10762.875000'
2024-05-19 20:18:17 (7140): VM state change detected. (old = 'running', new = 'paused')
2024-05-19 23:18:21 (7140): VM state change detected. (old = 'paused', new = 'running')
2024-05-19 23:18:30 (7140): Guest Log: 02:00:22.098762 timesync vgsvcTimeSyncWorker: Radical host time change: 10 813 718 000 000ns (HostNow=1 716 153 509 613 000 000 ns HostLast=1 716 142 695 895 000 000 ns)
2024-05-19 23:18:40 (7140): Guest Log: 02:00:32.106337 timesync vgsvcTimeSyncWorker: Radical guest time change: 10 813 722 260 000ns (GuestNow=1 716 153 519 620 618 000 ns GuestLast=1 716 142 705 898 358 000 ns fSetTimeLastLoop=true )
2024-05-20 00:38:02 (7140): Status Report: Elapsed Time: '12000.000000'
2024-05-20 00:38:02 (7140): Status Report: CPU Time: '22769.546875'
2024-05-20 01:19:00 (7140): VM state change detected. (old = 'running', new = 'paused')
2024-05-20 02:19:10 (7140): VM state change detected. (old = 'paused', new = 'running')
2024-05-20 02:19:12 (7140): Guest Log: 04:00:53.785132 timesync vgsvcTimeSyncWorker: Radical host time change: 3 620 793 000 000ns (HostNow=1 716 164 351 902 000 000 ns HostLast=1 716 160 731 109 000 000 ns)
2024-05-20 02:19:22 (7140): Guest Log: 04:01:03.785984 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 620 603 719 000ns (GuestNow=1 716 164 361 902 888 000 ns GuestLast=1 716 160 741 299 169 000 ns fSetTimeLastLoop=true )
2024-05-20 03:18:17 (7140): Status Report: Elapsed Time: '18000.000000'
2024-05-20 03:18:17 (7140): Status Report: CPU Time: '34775.406250'
2024-05-20 03:38:19 (7140): Guest Log:  *** Job finished ***
2024-05-20 03:38:19 (7140): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:02,526 | INFO     | [data] queue_monitor thread has finished
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:08,375 | INFO     | job.realtimelogging is not enabled
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:09,377 | INFO     | [payload] run_realtimelog thread has finished
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:11,491 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140409425749824)>', '<ExcThread(monitor, started 140408755566336)>']
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:11,621 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:11,621 | INFO     | [monitor] control thread has ended
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,497 | INFO     | all workflow threads have been joined
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,498 | INFO     | end of generic workflow (traces error code: 0)
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,498 | INFO     | traces error code: 0
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,498 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,542 [wrapper] ==== pilot stdout END ====
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,544 [wrapper] ==== wrapper stdout RESUME ====
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,547 [wrapper] pilotpid: 6405
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,549 [wrapper] Pilot exit status: 0
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,833 [wrapper] pandaids: 6206320159
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,861 [wrapper] cleanup: SIGTERM to supervisor_pilot 26846 6406
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,865 [wrapper] Test setup, not cleaning
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,868 [wrapper] ==== wrapper stdout END ====
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,870 [wrapper] ==== wrapper stderr END ====
2024-05-20 03:38:19 (7140): Guest Log: 2024-05-20 01:38:16,875 [wrapper] apfmon messages muted
2024-05-20 03:38:19 (7140): Guest Log:  *** Error codes and diagnostics ***
2024-05-20 03:38:19 (7140): Guest Log:     "exeErrorCode": 0,
2024-05-20 03:38:19 (7140): Guest Log:     "exeErrorDiag": "",
2024-05-20 03:38:19 (7140): Guest Log:     "pilotErrorCode": 0,
2024-05-20 03:38:19 (7140): Guest Log:     "pilotErrorDiag": "",
2024-05-20 03:38:19 (7140): Guest Log:  *** Listing of results directory ***
2024-05-20 03:38:19 (7140): Guest Log: total 247884
2024-05-20 03:38:19 (7140): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 14 23:29 pilot3.tar.gz
2024-05-20 03:38:19 (7140): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 14 23:30 queuedata.json
2024-05-20 03:38:19 (7140): Guest Log: -rwx------. 1 atlas atlas     32251 May 14 23:31 runpilot2-wrapper.sh
2024-05-20 03:38:19 (7140): Guest Log: -rwxr-xr-x. 1 atlas atlas      9230 May 19 16:18 init_data.xml
2024-05-20 03:38:19 (7140): Guest Log: -rwxr-xr-x. 1 atlas atlas    480015 May 19 16:18 input.tar.gz
2024-05-20 03:38:19 (7140): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 May 19 16:18 start_atlas.sh
2024-05-20 03:38:19 (7140): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 19 16:18 EVNT.38776119._000129.pool.root.1 -> /data/./ATLAS.root_0
2024-05-20 03:38:19 (7140): Guest Log: -rw-r--r--. 1 atlas atlas      2633 May 19 16:18 pandaJob.out
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas       458 May 19 16:18 setup.sh.local
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas   1014061 May 19 16:20 agis_schedconf.cvmfs.json
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas   1324701 May 19 16:20 cric_ddmendpoints.json
2024-05-20 03:38:19 (7140): Guest Log: drwx------. 4 atlas atlas      4096 May 19 16:20 pilot3
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas 245655856 May 20 01:37 HITS.38776125._010882.pool.root.1
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas        98 May 20 01:37 pilot_heartbeat.json
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas      1032 May 20 01:37 memory_monitor_summary.json
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas         0 May 20 01:37 agis_ddmendpoints.agis.ALL.json
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas    356994 May 20 01:37 log.38776125._010882.job.log.tgz.1
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas      7744 May 20 01:37 heartbeat.json
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas      4529 May 20 01:38 pilotlog.txt
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas   1998859 May 20 01:38 log.38776125._010882.job.log.1
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas       357 May 20 01:38 output.list
2024-05-20 03:38:19 (7140): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 20 01:38 runtime_log
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas   2375680 May 20 01:38 result.tar.gz
2024-05-20 03:38:19 (7140): Guest Log: -rw-r--r--. 1 atlas atlas     11267 May 20 01:38 runtime_log.err
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas       643 May 20 01:38 JiALDmJnGR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmXTNKDmKGugXm.diag
2024-05-20 03:38:19 (7140): Guest Log: Looking for outputfile HITS.38776125._010882.pool.root.1
2024-05-20 03:38:19 (7140): Guest Log: HITS file was successfully produced
2024-05-20 03:38:19 (7140): Guest Log: -rw-------. 1 atlas atlas 245655856 May 20 01:37 /home/atlas/RunAtlas/HITS.38776125._010882.pool.root.1
2024-05-20 03:38:19 (7140): Guest Log: Successfully finished the ATLAS job!
2024-05-20 03:38:19 (7140): Guest Log: Copying the results back to the shared directory!
2024-05-20 03:38:20 (7140): Guest Log:  *** Contents of shared directory: ***
2024-05-20 03:38:20 (7140): Guest Log: total 827924
2024-05-20 03:38:20 (7140): Guest Log: -rwxrwxrwx. 1 root root 599242149 May 19 16:17 ATLAS.root_0
2024-05-20 03:38:20 (7140): Guest Log: -rwxrwxrwx. 1 root root 245655856 May 20 01:38 HITS.pool.root.1
2024-05-20 03:38:20 (7140): Guest Log: -rwxrwxrwx. 1 root root      9230 May 19 16:17 init_data.xml
2024-05-20 03:38:20 (7140): Guest Log: -rwxrwxrwx. 1 root root    480015 May 15 03:18 input.tar.gz
2024-05-20 03:38:20 (7140): Guest Log: -rwxrwxrwx. 1 root root   2375680 May 20 01:38 result.tar.gz
2024-05-20 03:38:20 (7140): Guest Log: -rwxrwxrwx. 1 root root     17537 May 15 03:18 start_atlas.sh
2024-05-20 03:38:20 (7140): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-20 03:38:20 (7140): VM Completion File Detected.
2024-05-20 03:38:20 (7140): Powering off VM.
2024-05-20 03:38:21 (7140): Successfully stopped VM.
2024-05-20 03:38:21 (7140): Deregistering VM. (boinc_0fe31b10c9a9ae67, slot#0)
2024-05-20 03:38:21 (7140): Removing network bandwidth throttle group from VM.
2024-05-20 03:38:21 (7140): Removing VM from VirtualBox.
03:38:26 (7140): called boinc_finish(0)

</stderr_txt>
]]>

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