Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
16:36:22 (1208497): wrapper (7.7.26015): starting
16:36:22 (1208497): wrapper: running run_atlas (--nthreads 4)
[2024-05-17 16:36:22] Arguments: --nthreads 4
[2024-05-17 16:36:22] Threads: 4
[2024-05-17 16:36:22] Checking for CVMFS
[2024-05-17 16:36:22] No cvmfs_config command found, will try listing directly
[2024-05-17 16:36:22] CVMFS is ok
[2024-05-17 16:36:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 16:36:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 16:36:22] Further information can be found at the LHC@home message board.
[2024-05-17 16:36:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 16:36:22] Checking for apptainer binary...
[2024-05-17 16:36:22] which: no apptainer in ((null))
[2024-05-17 16:36:22] apptainer is not installed, using version from CVMFS
[2024-05-17 16:36:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 16:36:23] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-05-17 16:36:23] apptainer works
[2024-05-17 16:36:23] Set ATHENA_PROC_NUMBER=4
[2024-05-17 16:36:23] Set ATHENA_CORE_NUMBER=4
[2024-05-17 16:36:23] Starting ATLAS job with PandaID=6206273584
[2024-05-17 16:36:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:23:30 (2164064): wrapper (7.7.26015): starting
21:23:30 (2164064): wrapper: running run_atlas (--nthreads 4)
[2024-05-17 21:23:30] Arguments: --nthreads 4
[2024-05-17 21:23:30] Threads: 4
[2024-05-17 21:23:30] This job has been restarted, cleaning up previous attempt
[2024-05-17 21:23:30] Checking for CVMFS
[2024-05-17 21:23:30] No cvmfs_config command found, will try listing directly
[2024-05-17 21:23:30] CVMFS is ok
[2024-05-17 21:23:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 21:23:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 21:23:30] Further information can be found at the LHC@home message board.
[2024-05-17 21:23:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 21:23:30] Checking for apptainer binary...
[2024-05-17 21:23:30] which: no apptainer in ((null))
[2024-05-17 21:23:30] apptainer is not installed, using version from CVMFS
[2024-05-17 21:23:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 21:23:31] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-05-17 21:23:31] apptainer works
[2024-05-17 21:23:31] Set ATHENA_PROC_NUMBER=4
[2024-05-17 21:23:31] Set ATHENA_CORE_NUMBER=4
[2024-05-17 21:23:31] Starting ATLAS job with PandaID=6206273584
[2024-05-17 21:23:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 21:26:40] Job failed
[2024-05-17 21:26:40] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2024-05-17 21:26:40] ++ pwd
[2024-05-17 21:26:40] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot80/slots/1/
[2024-05-17 21:26:40] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot80/slots/1/
[2024-05-17 21:26:40] + mv ATLAS.root_0 EVNT.38776140._000508.pool.root.1
[2024-05-17 21:26:40] mv: 'ATLAS.root_0' and 'EVNT.38776140._000508.pool.root.1' are the same file
[2024-05-17 21:26:40] + tar --strip-components=5 -xvf input.tar.gz
[2024-05-17 21:26:40] + umask 077
[2024-05-17 21:26:40] ++ date +%s
[2024-05-17 21:26:40] + ACCOUNTING_STARTTIME=1715973812
[2024-05-17 21:26:40] + echo 'Detecting resource accounting method available for the job.'
[2024-05-17 21:26:40] Detecting resource accounting method available for the job.
[2024-05-17 21:26:40] + JOB_ACCOUNTING=
[2024-05-17 21:26:40] + command -v arc-job-cgroup
[2024-05-17 21:26:40] + '[' -z '' ']'
[2024-05-17 21:26:40] + GNU_TIME=/usr/bin/time
[2024-05-17 21:26:40] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2024-05-17 21:26:40] Looking for /usr/bin/time tool for accounting measurements
[2024-05-17 21:26:40] + '[' '!' -z /usr/bin/time ']'
[2024-05-17 21:26:40] + /usr/bin/time --version
[2024-05-17 21:26:40] + echo 'GNU time found and will be used for job accounting.'
[2024-05-17 21:26:40] GNU time found and will be used for job accounting.
[2024-05-17 21:26:40] + JOB_ACCOUNTING=gnutime
[2024-05-17 21:26:40] + '[' -z gnutime ']'
[2024-05-17 21:26:40] + export PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-17 21:26:40] + PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-17 21:26:40] + export GTAG=http://aipanda404.cern.ch/data/jobs/2024-05-14/BOINC_MCORE/6206273584.out
[2024-05-17 21:26:40] + GTAG=http://aipanda404.cern.ch/data/jobs/2024-05-14/BOINC_MCORE/6206273584.out
[2024-05-17 21:26:40] + export PILOT_NOKILL=YES
[2024-05-17 21:26:40] + PILOT_NOKILL=YES
[2024-05-17 21:26:40] + export GRID_GLOBAL_JOBID=AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn
[2024-05-17 21:26:40] + GRID_GLOBAL_JOBID=AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn
[2024-05-17 21:26:40] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn
[2024-05-17 21:26:40] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn
[2024-05-17 21:26:40] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-17 21:26:40] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-17 21:26:40] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-17 21:26:40] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-17 21:26:40] ++ pwd
[2024-05-17 21:26:40] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot80/slots/1
[2024-05-17 21:26:40] + RUNTIME_JOB_STDIN=/dev/null
[2024-05-17 21:26:40] ++ pwd
[2024-05-17 21:26:40] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot80/slots/1/log.38776146._013880.job.log.1
[2024-05-17 21:26:40] ++ pwd
[2024-05-17 21:26:40] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot80/slots/1/log.38776146._013880.job.log.1
[2024-05-17 21:26:40] ++ pwd
[2024-05-17 21:26:40] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot80/slots/1.diag
[2024-05-17 21:26:40] + '[' '!' -z '' ']'
[2024-05-17 21:26:40] + RUNTIME_LOCAL_SCRATCH_DIR=
[2024-05-17 21:26:40] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2024-05-17 21:26:40] + RUNTIME_FRONTEND_SEES_NODE=
[2024-05-17 21:26:40] + RUNTIME_NODE_SEES_FRONTEND=yes
[2024-05-17 21:26:40] + '[' '!' -z '' ']'
[2024-05-17 21:26:40] + '[' -z yes ']'
[2024-05-17 21:26:40] ++ pwd
[2024-05-17 21:26:40] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot80/slots/1/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn.diag
[2024-05-17 21:26:40] + runtimeenvironments=
[2024-05-17 21:26:40] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-17 21:26:40] + RTE_function_0 1
[2024-05-17 21:26:40] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-17 21:26:40] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-17 21:26:40] + export BOINC_APP=ATLAS
[2024-05-17 21:26:40] + BOINC_APP=ATLAS
[2024-05-17 21:26:40] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-17 21:26:40] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-17 21:26:40] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-17 21:26:40] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-17 21:26:40] + '[' -z 1 ']'
[2024-05-17 21:26:40] + '[' 1 == 1 ']'
[2024-05-17 21:26:40] + shift
[2024-05-17 21:26:40] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2024-05-17 21:26:40] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-17 21:26:40] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2024-05-17 21:26:40] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot80/slots/1/
[2024-05-17 21:26:40] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot80/slots/1/
[2024-05-17 21:26:40] + '[' -e /scratch/boinc/var/slot80/slots/1/init_data.xml ']'
[2024-05-17 21:26:40] + grep '<use_http_proxy/>' /scratch/boinc/var/slot80/slots/1/init_data.xml
[2024-05-17 21:26:40] + '[' -e /scratch/boinc/var/slot80/slots/1/init_data.xml ']'
[2024-05-17 21:26:40] + grep '.cern.ch</domain_name>' /scratch/boinc/var/slot80/slots/1/init_data.xml
[2024-05-17 21:26:40] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2024-05-17 21:26:40] + FRONTIER_PROXY_URLS='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-17 21:26:40] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2024-05-17 21:26:40] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-17 21:26:40] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-17 21:26:40] + '[' 0 -ne 0 ']'
[2024-05-17 21:26:40] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2024-05-17 21:26:40] + '[' -f /etc/os-release ']'
[2024-05-17 21:26:40] +++ cat /etc/os-release
[2024-05-17 21:26:40] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2024-05-17 21:26:40] +++ NAME='CentOS Linux'
[2024-05-17 21:26:40] +++ VERSION='7 (Core)'
[2024-05-17 21:26:40] +++ ID=centos
[2024-05-17 21:26:40] +++ ID_LIKE='rhel fedora'
[2024-05-17 21:26:40] +++ VERSION_ID=7
[2024-05-17 21:26:40] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2024-05-17 21:26:40] +++ ANSI_COLOR='0;31'
[2024-05-17 21:26:40] +++ CPE_NAME=cpe:/o:centos:centos:7
[2024-05-17 21:26:40] +++ HOME_URL=https://www.centos.org/
[2024-05-17 21:26:40] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2024-05-17 21:26:40] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2024-05-17 21:26:40] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2024-05-17 21:26:40] +++ REDHAT_SUPPORT_PRODUCT=centos
[2024-05-17 21:26:40] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2024-05-17 21:26:40] ++ echo 'CentOS Linux 7 (Core)'
[2024-05-17 21:26:40] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2024-05-17 21:26:40] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2024-05-17 21:26:40] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2024-05-17 21:26:40] + HOME=/scratch/boinc/var/slot80/slots/1
[2024-05-17 21:26:40] + export HOME
[2024-05-17 21:26:40] + cd /scratch/boinc/var/slot80/slots/1
[2024-05-17 21:26:40] + '[' '!' -z '' ']'
[2024-05-17 21:26:40] + '[' -z '' ']'
[2024-05-17 21:26:40] ++ /bin/hostname -f
[2024-05-17 21:26:40] + nodename=skurut13.grid.cesnet.cz
[2024-05-17 21:26:40] + echo nodename=skurut13.grid.cesnet.cz
[2024-05-17 21:26:40] + echo Processors=1
[2024-05-17 21:26:40] + echo Benchmark=HEPSPEC:1.0
[2024-05-17 21:26:40] + executable=./runpilot2-wrapper.sh
[2024-05-17 21:26:40] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2024-05-17 21:26:40] ++ dd if=./runpilot2-wrapper.sh count=1
[2024-05-17 21:26:40] ++ head -n 1
[2024-05-17 21:26:40] ++ tr -d '\0'
[2024-05-17 21:26:40] + line1='#!/bin/bash'
[2024-05-17 21:26:40] ++ echo '#!/bin/bash'
[2024-05-17 21:26:40] ++ sed -n 's/^#! *//p'
[2024-05-17 21:26:40] + shebang=/bin/bash
[2024-05-17 21:26:40] ++ echo /bin/bash
[2024-05-17 21:26:40] ++ awk '{print $1}'
[2024-05-17 21:26:40] + interpreter=/bin/bash
[2024-05-17 21:26:40] + '[' /bin/bash = /usr/bin/env ']'
[2024-05-17 21:26:40] + '[' x/bin/bash = x ']'
[2024-05-17 21:26:40] + type /bin/bash
[2024-05-17 21:26:40] + '[' xgnutime = xgnutime ']'
[2024-05-17 21:26:40] + /usr/bin/time -o /scratch/boinc/var/slot80/slots/1/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.5.4 -z -t --piloturl local --mute --container
[2024-05-17 21:26:40] + RESULT=2
[2024-05-17 21:26:40] + sed -i -e /nodename=/d /scratch/boinc/var/slot80/slots/1/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn.diag
[2024-05-17 21:26:40] ++ grep domain_name init_data.xml
[2024-05-17 21:26:40] ++ awk -F '>' '{print $2}'
[2024-05-17 21:26:40] ++ awk -F '<' '{print $1}'
[2024-05-17 21:26:40] ++ sed -e 's# #_#g'
[2024-05-17 21:26:40] + hostname=skurut13.grid.cesnet.cz
[2024-05-17 21:26:40] ++ grep user_name init_data.xml
[2024-05-17 21:26:40] ++ awk -F '>' '{print $2}'
[2024-05-17 21:26:40] ++ sed -e 's# #_#g'
[2024-05-17 21:26:40] ++ awk -F '<' '{print $1}'
[2024-05-17 21:26:40] + username=praguelcg2
[2024-05-17 21:26:40] + nodename=praguelcg2@skurut13.grid.cesnet.cz
[2024-05-17 21:26:40] + echo nodename=praguelcg2@skurut13.grid.cesnet.cz
[2024-05-17 21:26:40] + '[' -n 4 ']'
[2024-05-17 21:26:40] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot80/slots/1/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn.diag
[2024-05-17 21:26:40] + echo exitcode=2
[2024-05-17 21:26:40] + runtimeenvironments=
[2024-05-17 21:26:40] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-17 21:26:40] + RTE_function_0 2
[2024-05-17 21:26:40] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-17 21:26:40] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-17 21:26:40] + export BOINC_APP=ATLAS
[2024-05-17 21:26:40] + BOINC_APP=ATLAS
[2024-05-17 21:26:40] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-17 21:26:40] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-17 21:26:40] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-17 21:26:40] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-17 21:26:40] + '[' -z 2 ']'
[2024-05-17 21:26:40] + '[' 2 == 1 ']'
[2024-05-17 21:26:40] + '[' 0 -ne 0 ']'
[2024-05-17 21:26:40] + echo 'zip all output files'
[2024-05-17 21:26:40] + flist='*.diag '
[2024-05-17 21:26:40] + for f in ./heartbeat.json ./output.list ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1 ./gmlog/
[2024-05-17 21:26:40] + '[' -e ./heartbeat.json ']'
[2024-05-17 21:26:40] + flist='*.diag  ./heartbeat.json'
[2024-05-17 21:26:40] + for f in ./heartbeat.json ./output.list ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1 ./gmlog/
[2024-05-17 21:26:40] + '[' -e ./output.list ']'
[2024-05-17 21:26:40] + for f in ./heartbeat.json ./output.list ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1 ./gmlog/
[2024-05-17 21:26:40] + '[' -e ./log.38776146._013880.job.log.1 ']'
[2024-05-17 21:26:40] + flist='*.diag  ./heartbeat.json ./log.38776146._013880.job.log.1'
[2024-05-17 21:26:40] + for f in ./heartbeat.json ./output.list ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1 ./gmlog/
[2024-05-17 21:26:40] + '[' -e ./log.38776146._013880.job.log.1 ']'
[2024-05-17 21:26:40] + flist='*.diag  ./heartbeat.json ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1'
[2024-05-17 21:26:40] + for f in ./heartbeat.json ./output.list ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1 ./gmlog/
[2024-05-17 21:26:40] + '[' -e ./gmlog/ ']'
[2024-05-17 21:26:40] + '[' -f output.list ']'
[2024-05-17 21:26:40] + tar cvf result.tar.gz AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn.diag ./heartbeat.json ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1
[2024-05-17 21:26:40] + '[' xgnutime = xcgroup ']'
[2024-05-17 21:26:40] + '[' -n '' ']'
[2024-05-17 21:26:40] + '[' -n '' ']'
[2024-05-17 21:26:40] ++ date +%s
[2024-05-17 21:26:40] + ACCOUNTING_ENDTIME=1715973999
[2024-05-17 21:26:40] ++ date -d '1970-01-01 UTC 1715973812 seconds' +%Y%m%d%H%M%SZ
[2024-05-17 21:26:40] + echo LRMSStartTime=20240517212332Z
[2024-05-17 21:26:40] ++ date -d '1970-01-01 UTC 1715973999 seconds' +%Y%m%d%H%M%SZ
[2024-05-17 21:26:40] + echo LRMSEndTime=20240517212639Z
[2024-05-17 21:26:40] + echo walltime=187
[2024-05-17 21:26:40] + echo exitcode=2
[2024-05-17 21:26:40] + exit 2
[2024-05-17 21:26:40] ./log.38776146._013880.job.log.1
[2024-05-17 21:26:40] ./runtime_log
[2024-05-17 21:26:40] ./pilotlog.txt
[2024-05-17 21:26:40] ./PanDA_Pilot-6206273584/PoolFileCatalog.xml
[2024-05-17 21:26:40] ./PanDA_Pilot-6206273584/prmon.log
[2024-05-17 21:26:40] ./PanDA_Pilot-6206273584/log.EVNTtoHITS
[2024-05-17 21:26:40] ./PanDA_Pilot-6206273584/pilotlog.txt
[2024-05-17 21:26:40] ./pilot3/pilot/util/loggingsupport.py
[2024-05-17 21:26:40] ./pilot3/pilot/util/realtimelogger.py
[2024-05-17 21:26:40] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2024-05-17 21:26:40] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2024-05-17 21:26:40] ./runtime_log.err
06:09:19 (3613053): wrapper (7.7.26015): starting
06:09:19 (3613053): wrapper: running run_atlas (--nthreads 4)
[2024-05-18 06:09:19] Arguments: --nthreads 4
[2024-05-18 06:09:19] Threads: 4
[2024-05-18 06:09:19] This job has been restarted, cleaning up previous attempt
[2024-05-18 06:09:19] Checking for CVMFS
[2024-05-18 06:09:19] No cvmfs_config command found, will try listing directly
[2024-05-18 06:09:19] CVMFS is ok
[2024-05-18 06:09:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 06:09:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 06:09:19] Further information can be found at the LHC@home message board.
[2024-05-18 06:09:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 06:09:19] Checking for apptainer binary...
[2024-05-18 06:09:19] which: no apptainer in ((null))
[2024-05-18 06:09:19] apptainer is not installed, using version from CVMFS
[2024-05-18 06:09:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 06:09:20] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-05-18 06:09:20] apptainer works
[2024-05-18 06:09:20] Set ATHENA_PROC_NUMBER=4
[2024-05-18 06:09:20] Set ATHENA_CORE_NUMBER=4
[2024-05-18 06:09:20] Starting ATLAS job with PandaID=6206273584
[2024-05-18 06:09:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:05:24 (1356813): wrapper (7.7.26015): starting
17:05:24 (1356813): wrapper: running run_atlas (--nthreads 4)
[2024-05-18 17:05:24] Arguments: --nthreads 4
[2024-05-18 17:05:24] Threads: 4
[2024-05-18 17:05:24] This job has been restarted, cleaning up previous attempt
[2024-05-18 17:05:24] Checking for CVMFS
[2024-05-18 17:05:24] No cvmfs_config command found, will try listing directly
[2024-05-18 17:05:24] CVMFS is ok
[2024-05-18 17:05:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 17:05:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 17:05:24] Further information can be found at the LHC@home message board.
[2024-05-18 17:05:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 17:05:24] Checking for apptainer binary...
[2024-05-18 17:05:24] which: no apptainer in ((null))
[2024-05-18 17:05:24] apptainer is not installed, using version from CVMFS
[2024-05-18 17:05:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 17:05:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-05-18 17:05:25] apptainer works
[2024-05-18 17:05:25] Set ATHENA_PROC_NUMBER=4
[2024-05-18 17:05:25] Set ATHENA_CORE_NUMBER=4
[2024-05-18 17:05:25] Starting ATLAS job with PandaID=6206273584
[2024-05-18 17:05:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 17:08:34] Job failed
[2024-05-18 17:08:34] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2024-05-18 17:08:34] ++ pwd
[2024-05-18 17:08:34] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot80/slots/1/
[2024-05-18 17:08:34] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot80/slots/1/
[2024-05-18 17:08:34] + mv ATLAS.root_0 EVNT.38776140._000508.pool.root.1
[2024-05-18 17:08:34] mv: 'ATLAS.root_0' and 'EVNT.38776140._000508.pool.root.1' are the same file
[2024-05-18 17:08:34] + tar --strip-components=5 -xvf input.tar.gz
[2024-05-18 17:08:34] + umask 077
[2024-05-18 17:08:34] ++ date +%s
[2024-05-18 17:08:34] + ACCOUNTING_STARTTIME=1716044726
[2024-05-18 17:08:34] + echo 'Detecting resource accounting method available for the job.'
[2024-05-18 17:08:34] Detecting resource accounting method available for the job.
[2024-05-18 17:08:34] + JOB_ACCOUNTING=
[2024-05-18 17:08:34] + command -v arc-job-cgroup
[2024-05-18 17:08:34] + '[' -z '' ']'
[2024-05-18 17:08:34] + GNU_TIME=/usr/bin/time
[2024-05-18 17:08:34] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2024-05-18 17:08:34] Looking for /usr/bin/time tool for accounting measurements
[2024-05-18 17:08:34] + '[' '!' -z /usr/bin/time ']'
[2024-05-18 17:08:34] + /usr/bin/time --version
[2024-05-18 17:08:34] + echo 'GNU time found and will be used for job accounting.'
[2024-05-18 17:08:34] GNU time found and will be used for job accounting.
[2024-05-18 17:08:34] + JOB_ACCOUNTING=gnutime
[2024-05-18 17:08:34] + '[' -z gnutime ']'
[2024-05-18 17:08:34] + export PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-18 17:08:34] + PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-18 17:08:34] + export GTAG=http://aipanda404.cern.ch/data/jobs/2024-05-14/BOINC_MCORE/6206273584.out
[2024-05-18 17:08:34] + GTAG=http://aipanda404.cern.ch/data/jobs/2024-05-14/BOINC_MCORE/6206273584.out
[2024-05-18 17:08:34] + export PILOT_NOKILL=YES
[2024-05-18 17:08:34] + PILOT_NOKILL=YES
[2024-05-18 17:08:34] + export GRID_GLOBAL_JOBID=AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn
[2024-05-18 17:08:34] + GRID_GLOBAL_JOBID=AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn
[2024-05-18 17:08:34] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn
[2024-05-18 17:08:34] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn
[2024-05-18 17:08:34] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-18 17:08:34] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-18 17:08:34] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-18 17:08:34] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-18 17:08:34] ++ pwd
[2024-05-18 17:08:34] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot80/slots/1
[2024-05-18 17:08:34] + RUNTIME_JOB_STDIN=/dev/null
[2024-05-18 17:08:34] ++ pwd
[2024-05-18 17:08:34] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot80/slots/1/log.38776146._013880.job.log.1
[2024-05-18 17:08:34] ++ pwd
[2024-05-18 17:08:34] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot80/slots/1/log.38776146._013880.job.log.1
[2024-05-18 17:08:34] ++ pwd
[2024-05-18 17:08:34] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot80/slots/1.diag
[2024-05-18 17:08:34] + '[' '!' -z '' ']'
[2024-05-18 17:08:34] + RUNTIME_LOCAL_SCRATCH_DIR=
[2024-05-18 17:08:34] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2024-05-18 17:08:34] + RUNTIME_FRONTEND_SEES_NODE=
[2024-05-18 17:08:34] + RUNTIME_NODE_SEES_FRONTEND=yes
[2024-05-18 17:08:34] + '[' '!' -z '' ']'
[2024-05-18 17:08:34] + '[' -z yes ']'
[2024-05-18 17:08:34] ++ pwd
[2024-05-18 17:08:34] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot80/slots/1/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn.diag
[2024-05-18 17:08:34] + runtimeenvironments=
[2024-05-18 17:08:34] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-18 17:08:34] + RTE_function_0 1
[2024-05-18 17:08:34] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-18 17:08:34] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-18 17:08:34] + export BOINC_APP=ATLAS
[2024-05-18 17:08:34] + BOINC_APP=ATLAS
[2024-05-18 17:08:34] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-18 17:08:34] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-18 17:08:34] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-18 17:08:34] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-18 17:08:34] + '[' -z 1 ']'
[2024-05-18 17:08:34] + '[' 1 == 1 ']'
[2024-05-18 17:08:34] + shift
[2024-05-18 17:08:34] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2024-05-18 17:08:34] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-18 17:08:34] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2024-05-18 17:08:34] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot80/slots/1/
[2024-05-18 17:08:34] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot80/slots/1/
[2024-05-18 17:08:34] + '[' -e /scratch/boinc/var/slot80/slots/1/init_data.xml ']'
[2024-05-18 17:08:34] + grep '<use_http_proxy/>' /scratch/boinc/var/slot80/slots/1/init_data.xml
[2024-05-18 17:08:34] + '[' -e /scratch/boinc/var/slot80/slots/1/init_data.xml ']'
[2024-05-18 17:08:34] + grep '.cern.ch</domain_name>' /scratch/boinc/var/slot80/slots/1/init_data.xml
[2024-05-18 17:08:34] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2024-05-18 17:08:34] + FRONTIER_PROXY_URLS='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-18 17:08:34] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2024-05-18 17:08:34] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-18 17:08:34] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-18 17:08:34] + '[' 0 -ne 0 ']'
[2024-05-18 17:08:34] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2024-05-18 17:08:34] + '[' -f /etc/os-release ']'
[2024-05-18 17:08:34] +++ cat /etc/os-release
[2024-05-18 17:08:34] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2024-05-18 17:08:34] +++ NAME='CentOS Linux'
[2024-05-18 17:08:34] +++ VERSION='7 (Core)'
[2024-05-18 17:08:34] +++ ID=centos
[2024-05-18 17:08:34] +++ ID_LIKE='rhel fedora'
[2024-05-18 17:08:34] +++ VERSION_ID=7
[2024-05-18 17:08:34] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2024-05-18 17:08:34] +++ ANSI_COLOR='0;31'
[2024-05-18 17:08:34] +++ CPE_NAME=cpe:/o:centos:centos:7
[2024-05-18 17:08:34] +++ HOME_URL=https://www.centos.org/
[2024-05-18 17:08:34] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2024-05-18 17:08:34] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2024-05-18 17:08:34] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2024-05-18 17:08:34] +++ REDHAT_SUPPORT_PRODUCT=centos
[2024-05-18 17:08:34] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2024-05-18 17:08:34] ++ echo 'CentOS Linux 7 (Core)'
[2024-05-18 17:08:34] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2024-05-18 17:08:34] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2024-05-18 17:08:34] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2024-05-18 17:08:34] + HOME=/scratch/boinc/var/slot80/slots/1
[2024-05-18 17:08:34] + export HOME
[2024-05-18 17:08:34] + cd /scratch/boinc/var/slot80/slots/1
[2024-05-18 17:08:34] + '[' '!' -z '' ']'
[2024-05-18 17:08:34] + '[' -z '' ']'
[2024-05-18 17:08:34] ++ /bin/hostname -f
[2024-05-18 17:08:34] + nodename=skurut13.grid.cesnet.cz
[2024-05-18 17:08:34] + echo nodename=skurut13.grid.cesnet.cz
[2024-05-18 17:08:34] + echo Processors=1
[2024-05-18 17:08:34] + echo Benchmark=HEPSPEC:1.0
[2024-05-18 17:08:34] + executable=./runpilot2-wrapper.sh
[2024-05-18 17:08:34] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2024-05-18 17:08:34] ++ dd if=./runpilot2-wrapper.sh count=1
[2024-05-18 17:08:34] ++ head -n 1
[2024-05-18 17:08:34] ++ tr -d '\0'
[2024-05-18 17:08:34] + line1='#!/bin/bash'
[2024-05-18 17:08:34] ++ echo '#!/bin/bash'
[2024-05-18 17:08:34] ++ sed -n 's/^#! *//p'
[2024-05-18 17:08:34] + shebang=/bin/bash
[2024-05-18 17:08:34] ++ echo /bin/bash
[2024-05-18 17:08:34] ++ awk '{print $1}'
[2024-05-18 17:08:34] + interpreter=/bin/bash
[2024-05-18 17:08:34] + '[' /bin/bash = /usr/bin/env ']'
[2024-05-18 17:08:34] + '[' x/bin/bash = x ']'
[2024-05-18 17:08:34] + type /bin/bash
[2024-05-18 17:08:34] + '[' xgnutime = xgnutime ']'
[2024-05-18 17:08:34] + /usr/bin/time -o /scratch/boinc/var/slot80/slots/1/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.5.4 -z -t --piloturl local --mute --container
[2024-05-18 17:08:34] + RESULT=2
[2024-05-18 17:08:34] + sed -i -e /nodename=/d /scratch/boinc/var/slot80/slots/1/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn.diag
[2024-05-18 17:08:34] ++ grep domain_name init_data.xml
[2024-05-18 17:08:34] ++ awk -F '<' '{print $1}'
[2024-05-18 17:08:34] ++ awk -F '>' '{print $2}'
[2024-05-18 17:08:34] ++ sed -e 's# #_#g'
[2024-05-18 17:08:34] + hostname=skurut13.grid.cesnet.cz
[2024-05-18 17:08:34] ++ grep user_name init_data.xml
[2024-05-18 17:08:34] ++ awk -F '>' '{print $2}'
[2024-05-18 17:08:34] ++ awk -F '<' '{print $1}'
[2024-05-18 17:08:34] ++ sed -e 's# #_#g'
[2024-05-18 17:08:34] + username=praguelcg2
[2024-05-18 17:08:34] + nodename=praguelcg2@skurut13.grid.cesnet.cz
[2024-05-18 17:08:34] + echo nodename=praguelcg2@skurut13.grid.cesnet.cz
[2024-05-18 17:08:34] + '[' -n 4 ']'
[2024-05-18 17:08:34] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot80/slots/1/AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn.diag
[2024-05-18 17:08:34] + echo exitcode=2
[2024-05-18 17:08:34] + runtimeenvironments=
[2024-05-18 17:08:34] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-18 17:08:34] + RTE_function_0 2
[2024-05-18 17:08:34] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-18 17:08:34] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-18 17:08:34] + export BOINC_APP=ATLAS
[2024-05-18 17:08:34] + BOINC_APP=ATLAS
[2024-05-18 17:08:34] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-18 17:08:34] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-18 17:08:34] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-18 17:08:34] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-18 17:08:34] + '[' -z 2 ']'
[2024-05-18 17:08:34] + '[' 2 == 1 ']'
[2024-05-18 17:08:34] + '[' 0 -ne 0 ']'
[2024-05-18 17:08:34] + echo 'zip all output files'
[2024-05-18 17:08:34] + flist='*.diag '
[2024-05-18 17:08:34] + for f in ./heartbeat.json ./output.list ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1 ./gmlog/
[2024-05-18 17:08:34] + '[' -e ./heartbeat.json ']'
[2024-05-18 17:08:34] + flist='*.diag  ./heartbeat.json'
[2024-05-18 17:08:34] + for f in ./heartbeat.json ./output.list ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1 ./gmlog/
[2024-05-18 17:08:34] + '[' -e ./output.list ']'
[2024-05-18 17:08:34] + for f in ./heartbeat.json ./output.list ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1 ./gmlog/
[2024-05-18 17:08:34] + '[' -e ./log.38776146._013880.job.log.1 ']'
[2024-05-18 17:08:34] + flist='*.diag  ./heartbeat.json ./log.38776146._013880.job.log.1'
[2024-05-18 17:08:34] + for f in ./heartbeat.json ./output.list ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1 ./gmlog/
[2024-05-18 17:08:34] + '[' -e ./log.38776146._013880.job.log.1 ']'
[2024-05-18 17:08:34] + flist='*.diag  ./heartbeat.json ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1'
[2024-05-18 17:08:34] + for f in ./heartbeat.json ./output.list ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1 ./gmlog/
[2024-05-18 17:08:34] + '[' -e ./gmlog/ ']'
[2024-05-18 17:08:34] + '[' -f output.list ']'
[2024-05-18 17:08:34] + tar cvf result.tar.gz AsVNDmxiER5nsSi4apGgGQJmABFKDmABFKDm4ySLDmZLNKDmCXrJtn.diag ./heartbeat.json ./log.38776146._013880.job.log.1 ./log.38776146._013880.job.log.1
[2024-05-18 17:08:34] + '[' xgnutime = xcgroup ']'
[2024-05-18 17:08:34] + '[' -n '' ']'
[2024-05-18 17:08:34] + '[' -n '' ']'
[2024-05-18 17:08:34] ++ date +%s
[2024-05-18 17:08:34] + ACCOUNTING_ENDTIME=1716044913
[2024-05-18 17:08:34] ++ date -d '1970-01-01 UTC 1716044726 seconds' +%Y%m%d%H%M%SZ
[2024-05-18 17:08:34] + echo LRMSStartTime=20240518170526Z
[2024-05-18 17:08:34] ++ date -d '1970-01-01 UTC 1716044913 seconds' +%Y%m%d%H%M%SZ
[2024-05-18 17:08:34] + echo LRMSEndTime=20240518170833Z
[2024-05-18 17:08:34] + echo walltime=187
[2024-05-18 17:08:34] + echo exitcode=2
[2024-05-18 17:08:34] + exit 2
[2024-05-18 17:08:34] ./log.38776146._013880.job.log.1
[2024-05-18 17:08:34] ./runtime_log
[2024-05-18 17:08:34] ./pilotlog.txt
[2024-05-18 17:08:34] ./PanDA_Pilot-6206273584/PoolFileCatalog.xml
[2024-05-18 17:08:34] ./PanDA_Pilot-6206273584/prmon.log
[2024-05-18 17:08:34] ./PanDA_Pilot-6206273584/log.EVNTtoHITS
[2024-05-18 17:08:34] ./PanDA_Pilot-6206273584/pilotlog.txt
[2024-05-18 17:08:34] ./pilot3/pilot/util/loggingsupport.py
[2024-05-18 17:08:34] ./pilot3/pilot/util/realtimelogger.py
[2024-05-18 17:08:34] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2024-05-18 17:08:34] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2024-05-18 17:08:34] ./runtime_log.err
17:18:34 (1356813): run_atlas exited; CPU time 13.184057
17:18:34 (1356813): app exit status: 0x1
17:18:34 (1356813): called boinc_finish(195)

</stderr_txt>
]]>

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