Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:22:20 (671759): wrapper (7.7.26015): starting
16:22:20 (671759): wrapper: running run_atlas (--nthreads 4)
[2024-05-18 16:22:20] Arguments: --nthreads 4
[2024-05-18 16:22:20] Threads: 4
[2024-05-18 16:22:20] Checking for CVMFS
[2024-05-18 16:22:20] No cvmfs_config command found, will try listing directly
[2024-05-18 16:22:20] CVMFS is ok
[2024-05-18 16:22:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 16:22:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 16:22:20] Further information can be found at the LHC@home message board.
[2024-05-18 16:22:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 16:22:20] Checking for apptainer binary...
[2024-05-18 16:22:20] which: no apptainer in ((null))
[2024-05-18 16:22:20] apptainer is not installed, using version from CVMFS
[2024-05-18 16:22:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 16:22:21] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2024-05-18 16:22:21] apptainer works
[2024-05-18 16:22:21] Set ATHENA_PROC_NUMBER=4
[2024-05-18 16:22:21] Set ATHENA_CORE_NUMBER=4
[2024-05-18 16:22:21] Starting ATLAS job with PandaID=6206251388
[2024-05-18 16:22:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 22:27:28]  *** The last 200 lines of the pilot log: ***
[2024-05-18 22:27:28] 2024-05-18 20:27:11,925 | WARNING  | GPU info not found in prmon json
[2024-05-18 22:27:28] 2024-05-18 20:27:11,925 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 22:27:28] 2024-05-18 20:27:11,925 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 22:27:28] 2024-05-18 20:27:11,928 | INFO     | fitting pss+swap vs Time
[2024-05-18 22:27:28] 2024-05-18 20:27:11,929 | INFO     | model: linear, x: [1716042177.0, 1716042238.0, 1716042299.0, 1716042360.0, 1716042421.0, 1716042482.0, 1716042543.0, 1716042604.0, 1716042665.0, 1716042726.0, 1716
[2024-05-18 22:27:28] 2024-05-18 20:27:11,929 | INFO     | sum of square deviations: 14346910860.0
[2024-05-18 22:27:28] 2024-05-18 20:27:11,931 | INFO     | sum of deviations: 77226298899.99998
[2024-05-18 22:27:28] 2024-05-18 20:27:11,931 | INFO     | mean x: 1716053096.0
[2024-05-18 22:27:28] 2024-05-18 20:27:11,931 | INFO     | mean y: 2339605.2646239554
[2024-05-18 22:27:28] 2024-05-18 20:27:11,931 | INFO     | -- intersect: -9234800752.904882
[2024-05-18 22:27:28] 2024-05-18 20:27:11,931 | INFO     | intersect: -9234800752.904882
[2024-05-18 22:27:28] 2024-05-18 20:27:11,931 | INFO     | chi2: 4.238656848835587
[2024-05-18 22:27:28] 2024-05-18 20:27:11,931 | INFO     | model: linear, x: [1716042177.0, 1716042238.0, 1716042299.0, 1716042360.0, 1716042421.0, 1716042482.0, 1716042543.0, 1716042604.0, 1716042665.0, 1716042726.0, 1716
[2024-05-18 22:27:28] 2024-05-18 20:27:11,932 | INFO     | sum of square deviations: 13755764892.5
[2024-05-18 22:27:28] 2024-05-18 20:27:11,933 | INFO     | sum of deviations: 99042191249.50002
[2024-05-18 22:27:28] 2024-05-18 20:27:11,933 | INFO     | mean x: 1716052943.5
[2024-05-18 22:27:28] 2024-05-18 20:27:11,933 | INFO     | mean y: 2345166.3700564974
[2024-05-18 22:27:28] 2024-05-18 20:27:11,934 | INFO     | -- intersect: -12353321359.819407
[2024-05-18 22:27:28] 2024-05-18 20:27:11,934 | INFO     | intersect: -12353321359.819407
[2024-05-18 22:27:28] 2024-05-18 20:27:11,934 | INFO     | chi2: 3.451287323473971
[2024-05-18 22:27:28] 2024-05-18 20:27:11,934 | INFO     | current chi2=3.451287323473971 (change=18.575920472965787 %)
[2024-05-18 22:27:28] 2024-05-18 20:27:11,934 | INFO     | right removable region: 353
[2024-05-18 22:27:28] 2024-05-18 20:27:11,934 | INFO     | model: linear, x: [1716042482.0, 1716042543.0, 1716042604.0, 1716042665.0, 1716042726.0, 1716042787.0, 1716042848.0, 1716042909.0, 1716042970.0, 1716043031.0, 1716
[2024-05-18 22:27:28] 2024-05-18 20:27:11,934 | INFO     | sum of square deviations: 13755764892.5
[2024-05-18 22:27:28] 2024-05-18 20:27:11,936 | INFO     | sum of deviations: -818674747.5000229
[2024-05-18 22:27:28] 2024-05-18 20:27:11,936 | INFO     | mean x: 1716053248.5
[2024-05-18 22:27:28] 2024-05-18 20:27:11,936 | INFO     | mean y: 2359697.765536723
[2024-05-18 22:27:28] 2024-05-18 20:27:11,936 | INFO     | -- intersect: 104490656.74102151
[2024-05-18 22:27:28] 2024-05-18 20:27:11,936 | INFO     | intersect: 104490656.74102151
[2024-05-18 22:27:28] 2024-05-18 20:27:11,936 | INFO     | chi2: 2.0835434462221363
[2024-05-18 22:27:28] 2024-05-18 20:27:11,937 | INFO     | current chi2=2.0835434462221363 (change=50.844252777987634 %)
[2024-05-18 22:27:28] 2024-05-18 20:27:11,937 | INFO     | model: linear, x: [1716042787.0, 1716042848.0, 1716042909.0, 1716042970.0, 1716043031.0, 1716043092.0, 1716043153.0, 1716043214.0, 1716043275.0, 1716043336.0, 1716
[2024-05-18 22:27:28] 2024-05-18 20:27:11,937 | INFO     | sum of square deviations: 13181084350.0
[2024-05-18 22:27:28] 2024-05-18 20:27:11,939 | INFO     | sum of deviations: -59925155112.0
[2024-05-18 22:27:28] 2024-05-18 20:27:11,939 | INFO     | mean x: 1716053401.0
[2024-05-18 22:27:28] 2024-05-18 20:27:11,939 | INFO     | mean y: 2375382.398280802
[2024-05-18 22:27:28] 2024-05-18 20:27:11,939 | INFO     | -- intersect: 7804067830.819654
[2024-05-18 22:27:28] 2024-05-18 20:27:11,939 | INFO     | intersect: 7804067830.819654
[2024-05-18 22:27:28] 2024-05-18 20:27:11,939 | INFO     | chi2: 0.9589586196104887
[2024-05-18 22:27:28] 2024-05-18 20:27:11,939 | INFO     | current chi2=0.9589586196104887 (change=53.97462811014263 %)
[2024-05-18 22:27:28] 2024-05-18 20:27:11,939 | INFO     | model: linear, x: [1716043092.0, 1716043153.0, 1716043214.0, 1716043275.0, 1716043336.0, 1716043397.0, 1716043458.0, 1716043519.0, 1716043580.0, 1716043641.0, 1716
[2024-05-18 22:27:28] 2024-05-18 20:27:11,939 | INFO     | sum of square deviations: 12622636670.0
[2024-05-18 22:27:28] 2024-05-18 20:27:11,941 | INFO     | sum of deviations: -59886151101.999985
[2024-05-18 22:27:28] 2024-05-18 20:27:11,941 | INFO     | mean x: 1716053553.5
[2024-05-18 22:27:28] 2024-05-18 20:27:11,941 | INFO     | mean y: 2375356.284883721
[2024-05-18 22:27:28] 2024-05-18 20:27:11,941 | INFO     | -- intersect: 8143926530.63434
[2024-05-18 22:27:28] 2024-05-18 20:27:11,941 | INFO     | intersect: 8143926530.63434
[2024-05-18 22:27:28] 2024-05-18 20:27:11,942 | INFO     | chi2: 0.9379970879343137
[2024-05-18 22:27:28] 2024-05-18 20:27:11,942 | INFO     | current chi2=0.9379970879343137 (change=2.185864045383853 %)
[2024-05-18 22:27:28] 2024-05-18 20:27:11,942 | INFO     | left removable region: 30
[2024-05-18 22:27:28] 2024-05-18 20:27:11,942 | INFO     | model: linear, x: [1716044007.0, 1716044068.0, 1716044129.0, 1716044190.0, 1716044251.0, 1716044312.0, 1716044373.0, 1716044434.0, 1716044495.0, 1716044556.0, 1716
[2024-05-18 22:27:28] 2024-05-18 20:27:11,942 | INFO     | sum of square deviations: 10449170802.0
[2024-05-18 22:27:28] 2024-05-18 20:27:11,944 | INFO     | sum of deviations: -4252198003.999998
[2024-05-18 22:27:28] 2024-05-18 20:27:11,944 | INFO     | mean x: 1716053828.0
[2024-05-18 22:27:28] 2024-05-18 20:27:11,944 | INFO     | mean y: 2371876.009287926
[2024-05-18 22:27:28] 2024-05-18 20:27:11,944 | INFO     | -- intersect: 700704863.4250444
[2024-05-18 22:27:28] 2024-05-18 20:27:11,944 | INFO     | intersect: 700704863.4250444
[2024-05-18 22:27:28] 2024-05-18 20:27:11,944 | INFO     | chi2: 0.02025554270286542
[2024-05-18 22:27:28] 2024-05-18 20:27:11,944 | INFO     | -- intersect: 700704863.4250444
[2024-05-18 22:27:28] 2024-05-18 20:27:11,944 | INFO     | current memory leak: -0.41 B/s (using 323 data points, chi2=0.02)
[2024-05-18 22:27:28] 2024-05-18 20:27:11,945 | INFO     | ..............................
[2024-05-18 22:27:28] 2024-05-18 20:27:11,945 | INFO     | . Timing measurements:
[2024-05-18 22:27:28] 2024-05-18 20:27:11,945 | INFO     | . get job = 0 s
[2024-05-18 22:27:28] 2024-05-18 20:27:11,945 | INFO     | . initial setup = 1 s
[2024-05-18 22:27:28] 2024-05-18 20:27:11,945 | INFO     | . payload setup = 5 s
[2024-05-18 22:27:28] 2024-05-18 20:27:11,945 | INFO     | . stage-in = 0 s
[2024-05-18 22:27:28] 2024-05-18 20:27:11,945 | INFO     | . payload execution = 21847 s
[2024-05-18 22:27:28] 2024-05-18 20:27:11,945 | INFO     | . stage-out = 0 s
[2024-05-18 22:27:28] 2024-05-18 20:27:11,945 | INFO     | . log creation = 0 s
[2024-05-18 22:27:28] 2024-05-18 20:27:11,945 | INFO     | ..............................
[2024-05-18 22:27:28] 2024-05-18 20:27:12,000 | INFO     | 
[2024-05-18 22:27:28] 2024-05-18 20:27:12,000 | INFO     | job summary report
[2024-05-18 22:27:28] 2024-05-18 20:27:12,000 | INFO     | --------------------------------------------------
[2024-05-18 22:27:28] 2024-05-18 20:27:12,000 | INFO     | PanDA job id: 6206251388
[2024-05-18 22:27:28] 2024-05-18 20:27:12,000 | INFO     | task id: 38920995
[2024-05-18 22:27:28] 2024-05-18 20:27:12,000 | INFO     | errors: (none)
[2024-05-18 22:27:28] 2024-05-18 20:27:12,000 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | pilot state: finished 
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | transexitcode: 0
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | exeerrorcode: 0
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | exeerrordiag: 
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | exitcode: 0
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | exitmsg: OK
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | cpuconsumptiontime: 84478 s
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | nevents: 400
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | neventsw: 0
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | pid: 683489
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | pgrp: 683489
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | corecount: 4
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | event service: False
[2024-05-18 22:27:28] 2024-05-18 20:27:12,001 | INFO     | sizes: {0: 2392182, 4: 2392388, 11: 2392416, 21856: 2426754, 21858: 2435736, 21859: 2435792, 21864: 2436090}
[2024-05-18 22:27:28] 2024-05-18 20:27:12,002 | INFO     | --------------------------------------------------
[2024-05-18 22:27:28] 2024-05-18 20:27:12,002 | INFO     | 
[2024-05-18 22:27:28] 2024-05-18 20:27:12,002 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/1
[2024-05-18 22:27:28] 2024-05-18 20:27:12,024 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,025 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,025 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,025 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,025 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,025 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,025 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,025 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,025 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,025 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,026 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,026 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,026 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,026 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,026 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,026 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,026 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,026 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 22:27:28] 2024-05-18 20:27:12,026 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,026 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 22:27:28] 2024-05-18 20:27:12,026 | INFO     | job 6206251388 has completed (purged errors)
[2024-05-18 22:27:28] 2024-05-18 20:27:12,027 | INFO     | overall cleanup function is called
[2024-05-18 22:27:28] 2024-05-18 20:27:13,034 | INFO     | --- collectZombieJob: --- 10, [683489]
[2024-05-18 22:27:28] 2024-05-18 20:27:13,035 | INFO     | zombie collector waiting for pid 683489
[2024-05-18 22:27:28] 2024-05-18 20:27:13,035 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 22:27:28] 2024-05-18 20:27:14,040 | INFO     | collected zombie processes
[2024-05-18 22:27:28] 2024-05-18 20:27:14,040 | INFO     | will now attempt to kill all subprocesses of pid=683489
[2024-05-18 22:27:28] 2024-05-18 20:27:14,203 | INFO     | process IDs to be killed: [683489] (in reverse order)
[2024-05-18 22:27:28] 2024-05-18 20:27:14,321 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 22:27:28] 2024-05-18 20:27:14,322 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 22:27:28] 2024-05-18 20:27:14,329 | INFO     | did not find any defunct processes belonging to 683489
[2024-05-18 22:27:28] 2024-05-18 20:27:14,335 | INFO     | did not find any defunct processes belonging to 683489
[2024-05-18 22:27:28] 2024-05-18 20:27:14,335 | INFO     | ready for new job
[2024-05-18 22:27:28] 2024-05-18 20:27:14,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 22:27:28] 2024-05-18 20:27:14,337 | INFO     | *************************************
[2024-05-18 22:27:28] 2024-05-18 20:27:14,337 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 22:27:28] 2024-05-18 20:27:14,337 | INFO     | *************************************
[2024-05-18 22:27:28] 2024-05-18 20:27:14,337 | INFO     | 
[2024-05-18 22:27:28] 2024-05-18 20:27:14,340 | INFO     | architecture information:
[2024-05-18 22:27:28] 2024-05-18 20:27:14,340 | INFO     | executing command: cat /etc/os-release
[2024-05-18 22:27:28] 2024-05-18 20:27:14,356 | INFO     | cat /etc/os-release:
[2024-05-18 22:27:28] NAME="CentOS Linux"
[2024-05-18 22:27:28] VERSION="7 (Core)"
[2024-05-18 22:27:28] ID="centos"
[2024-05-18 22:27:28] ID_LIKE="rhel fedora"
[2024-05-18 22:27:28] VERSION_ID="7"
[2024-05-18 22:27:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 22:27:28] ANSI_COLOR="0;31"
[2024-05-18 22:27:28] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 22:27:28] HOME_URL="https://www.centos.org/"
[2024-05-18 22:27:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 22:27:28] 
[2024-05-18 22:27:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 22:27:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 22:27:28] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 22:27:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 22:27:28] 
[2024-05-18 22:27:28] 2024-05-18 20:27:14,356 | INFO     | *************************************
[2024-05-18 22:27:28] 2024-05-18 20:27:14,859 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/1
[2024-05-18 22:27:28] 2024-05-18 20:27:14,881 | INFO     | sufficient remaining disk space (581112430592 B)
[2024-05-18 22:27:28] 2024-05-18 20:27:14,881 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 22:27:28] 2024-05-18 20:27:14,881 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 22:27:28] 2024-05-18 20:27:14,881 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 22:27:28] 2024-05-18 20:27:14,882 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 22:27:28] 2024-05-18 20:27:14,882 | INFO     | aborting loop
[2024-05-18 22:27:28] 2024-05-18 20:27:15,217 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 22:27:28] 2024-05-18 20:27:15,218 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 22:27:28] 2024-05-18 20:27:15,218 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 22:27:28] 2024-05-18 20:27:15,604 | INFO     | all data control threads have been joined
[2024-05-18 22:27:28] 2024-05-18 20:27:15,824 | INFO     | all job control threads have been joined
[2024-05-18 22:27:28] 2024-05-18 20:27:15,887 | INFO     | [job] retrieve thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:15,887 | INFO     | [job] job monitor thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:16,072 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:16,197 | INFO     | [payload] validate_post thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:16,316 | INFO     | all payload control threads have been joined
[2024-05-18 22:27:28] 2024-05-18 20:27:16,606 | INFO     | [data] control thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:16,623 | INFO     | [payload] failed_post thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:16,825 | INFO     | [job] control thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:16,887 | INFO     | [data] copytool_out thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:16,897 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:17,009 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 22:27:28] 2024-05-18 20:27:17,103 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:17,136 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:17,156 | INFO     | [job] validate thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:17,317 | INFO     | [payload] control thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:17,322 | INFO     | [data] copytool_in thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:17,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 22:27:28] 2024-05-18 20:27:18,015 | INFO     | [job] queue monitor thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:21,986 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 22:27:28] 2024-05-18 20:27:22,246 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47425724134464)>', '<ExcThread(monitor, started 47425893283584)>']
[2024-05-18 22:27:28] 2024-05-18 20:27:22,246 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 22:27:28] 2024-05-18 20:27:22,247 | INFO     | [monitor] control thread has ended
[2024-05-18 22:27:28] 2024-05-18 20:27:27,270 | INFO     | all workflow threads have been joined
[2024-05-18 22:27:28] 2024-05-18 20:27:27,271 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 22:27:28] 2024-05-18 20:27:27,271 | INFO     | traces error code: 0
[2024-05-18 22:27:28] 2024-05-18 20:27:27,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 22:27:28] 2024-05-18 20:27:27,353 [wrapper] ==== pilot stdout END ====
[2024-05-18 22:27:28] 2024-05-18 20:27:27,355 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 22:27:28] 2024-05-18 20:27:27,357 [wrapper] pilotpid: 676429
[2024-05-18 22:27:28] 2024-05-18 20:27:27,360 [wrapper] Pilot exit status: 0
[2024-05-18 22:27:28] 2024-05-18 20:27:27,370 [wrapper] pandaids: 6206251388
[2024-05-18 22:27:28] 2024-05-18 20:27:27,443 [wrapper] cleanup: SIGTERM to supervisor_pilot 1499507 676430
[2024-05-18 22:27:28] 2024-05-18 20:27:27,445 [wrapper] Test setup, not cleaning
[2024-05-18 22:27:28] 2024-05-18 20:27:27,447 [wrapper] ==== wrapper stdout END ====
[2024-05-18 22:27:28] 2024-05-18 20:27:27,449 [wrapper] ==== wrapper stderr END ====
[2024-05-18 22:27:28] 2024-05-18 20:27:27,453 [wrapper] apfmon messages muted
[2024-05-18 22:27:28]  *** Error codes and diagnostics ***
[2024-05-18 22:27:28]     "exeErrorCode": 0,
[2024-05-18 22:27:28]     "exeErrorDiag": "",
[2024-05-18 22:27:28]     "pilotErrorCode": 0,
[2024-05-18 22:27:28]     "pilotErrorDiag": "",
[2024-05-18 22:27:28]  *** Listing of results directory ***
[2024-05-18 22:27:28] total 1772988
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc    467845 May 14 22:00 pilot3.tar.gz
[2024-05-18 22:27:28] -rwx------ 1 boinc boinc     32251 May 14 22:32 runpilot2-wrapper.sh
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc      5633 May 14 22:32 queuedata.json
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc       100 May 17 22:01 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 22:27:28] -rwxr-xr-x 1 boinc boinc      7986 May 17 22:01 run_atlas
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc       105 May 17 22:01 job.xml
[2024-05-18 22:27:28] -rw------- 2 boinc boinc 336658432 May 17 22:18 copy_5k5S8i
[2024-05-18 22:27:28] -rw------- 2 boinc boinc 108724224 May 18 06:37 copy_NgbwrU
[2024-05-18 22:27:28] -rw------- 2 boinc boinc 377618432 May 18 11:53 copy_UdLnUU
[2024-05-18 22:27:28] -rw-r--r-- 2 boinc boinc 631411175 May 18 16:22 EVNT.38776180._000049.pool.root.1
[2024-05-18 22:27:28] -rw-r--r-- 2 boinc boinc     17537 May 18 16:22 start_atlas.sh
[2024-05-18 22:27:28] drwxrwx--x 2 boinc boinc      4096 May 18 16:22 shared
[2024-05-18 22:27:28] -rw-r--r-- 2 boinc boinc    480000 May 18 16:22 input.tar.gz
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc         0 May 18 16:22 boinc_lockfile
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc      2611 May 18 16:22 pandaJob.out
[2024-05-18 22:27:28] -rw------- 1 boinc boinc       424 May 18 16:22 setup.sh.local
[2024-05-18 22:27:28] -rw------- 1 boinc boinc   1019426 May 18 16:22 agis_schedconf.cvmfs.json
[2024-05-18 22:27:28] -rw------- 1 boinc boinc   1324701 May 18 16:22 cric_ddmendpoints.json
[2024-05-18 22:27:28] drwx------ 4 boinc boinc      4096 May 18 16:22 pilot3
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc      6665 May 18 16:31 init_data.xml
[2024-05-18 22:27:28] -rw------- 1 boinc boinc 351801565 May 18 22:26 HITS.38920995._001224.pool.root.1
[2024-05-18 22:27:28] -rw------- 1 boinc boinc        95 May 18 22:26 pilot_heartbeat.json
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc       532 May 18 22:26 boinc_task_state.xml
[2024-05-18 22:27:28] -rw------- 1 boinc boinc      1051 May 18 22:27 memory_monitor_summary.json
[2024-05-18 22:27:28] -rw------- 1 boinc boinc         0 May 18 22:27 agis_ddmendpoints.agis.ALL.json
[2024-05-18 22:27:28] -rw------- 1 boinc boinc    448893 May 18 22:27 log.38920995._001224.job.log.tgz.1
[2024-05-18 22:27:28] -rw------- 1 boinc boinc      7768 May 18 22:27 heartbeat.json
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc      8192 May 18 22:27 boinc_mmap_file
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc        28 May 18 22:27 wrapper_checkpoint.txt
[2024-05-18 22:27:28] -rw------- 1 boinc boinc      4221 May 18 22:27 pilotlog.txt
[2024-05-18 22:27:28] -rw------- 1 boinc boinc   2440174 May 18 22:27 log.38920995._001224.job.log.1
[2024-05-18 22:27:28] -rw------- 1 boinc boinc       357 May 18 22:27 output.list
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc       620 May 18 22:27 runtime_log
[2024-05-18 22:27:28] -rw------- 1 boinc boinc   2908160 May 18 22:27 result.tar.gz
[2024-05-18 22:27:28] -rw------- 1 boinc boinc       659 May 18 22:27 soUNDm2zDR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmyINKDmtMD07m.diag
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc     11410 May 18 22:27 runtime_log.err
[2024-05-18 22:27:28] -rw-r--r-- 1 boinc boinc     21272 May 18 22:27 stderr.txt
[2024-05-18 22:27:28] HITS file was successfully produced:
[2024-05-18 22:27:28] -rw------- 1 boinc boinc 351801565 May 18 22:26 shared/HITS.pool.root.1
[2024-05-18 22:27:28]  *** Contents of shared directory: ***
[2024-05-18 22:27:28] total 1767240
[2024-05-18 22:27:28] -rw------- 2 boinc boinc 336658432 May 17 22:18 copy_5k5S8i
[2024-05-18 22:27:28] -rw------- 2 boinc boinc 108724224 May 18 06:37 copy_NgbwrU
[2024-05-18 22:27:28] -rw------- 2 boinc boinc 377618432 May 18 11:53 copy_UdLnUU
[2024-05-18 22:27:28] -rw-r--r-- 2 boinc boinc 631411175 May 18 16:22 ATLAS.root_0
[2024-05-18 22:27:28] -rw-r--r-- 2 boinc boinc     17537 May 18 16:22 start_atlas.sh
[2024-05-18 22:27:28] -rw-r--r-- 2 boinc boinc    480000 May 18 16:22 input.tar.gz
[2024-05-18 22:27:28] -rw------- 1 boinc boinc 351801565 May 18 22:26 HITS.pool.root.1
[2024-05-18 22:27:28] -rw------- 1 boinc boinc   2908160 May 18 22:27 result.tar.gz
22:27:29 (671759): run_atlas exited; CPU time 83970.691097
22:27:29 (671759): called boinc_finish(0)

</stderr_txt>
]]>

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