Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:35:50 (63952): wrapper (7.7.26015): starting
12:35:50 (63952): wrapper: running run_atlas (--nthreads 4)
[2024-05-17 12:35:50] Arguments: --nthreads 4
[2024-05-17 12:35:50] Threads: 4
[2024-05-17 12:35:50] Checking for CVMFS
[2024-05-17 12:35:50] No cvmfs_config command found, will try listing directly
[2024-05-17 12:35:50] CVMFS is ok
[2024-05-17 12:35:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 12:35:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 12:35:50] Further information can be found at the LHC@home message board.
[2024-05-17 12:35:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 12:35:50] Checking for apptainer binary...
[2024-05-17 12:35:50] which: no apptainer in ((null))
[2024-05-17 12:35:50] apptainer is not installed, using version from CVMFS
[2024-05-17 12:35:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 12:35:51] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2024-05-17 12:35:51] apptainer works
[2024-05-17 12:35:51] Set ATHENA_PROC_NUMBER=4
[2024-05-17 12:35:51] Set ATHENA_CORE_NUMBER=4
[2024-05-17 12:35:51] Starting ATLAS job with PandaID=6206224009
[2024-05-17 12:35:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 14:53:14]  *** The last 200 lines of the pilot log: ***
[2024-05-17 14:53:14] 2024-05-17 12:52:52,236 | INFO     | fitting pss+swap vs Time
[2024-05-17 14:53:14] 2024-05-17 12:52:52,236 | INFO     | model: linear, x: [1715942186.0, 1715942247.0, 1715942308.0, 1715942369.0, 1715942430.0, 1715942491.0, 1715942552.0, 1715942613.0, 1715942674.0, 1715942735.0, 1715
[2024-05-17 14:53:14] 2024-05-17 12:52:52,236 | INFO     | sum of square deviations: 762879420.0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,237 | INFO     | sum of deviations: 45248973755.0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,237 | INFO     | mean x: 1715946273.0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,237 | INFO     | mean y: 2228964.6296296297
[2024-05-17 14:53:14] 2024-05-17 12:52:52,237 | INFO     | -- intersect: -101776382223.97351
[2024-05-17 14:53:14] 2024-05-17 12:52:52,237 | INFO     | intersect: -101776382223.97351
[2024-05-17 14:53:14] 2024-05-17 12:52:52,238 | INFO     | chi2: 4.685583605852488
[2024-05-17 14:53:14] 2024-05-17 12:52:52,238 | INFO     | model: linear, x: [1715942186.0, 1715942247.0, 1715942308.0, 1715942369.0, 1715942430.0, 1715942491.0, 1715942552.0, 1715942613.0, 1715942674.0, 1715942735.0, 1715
[2024-05-17 14:53:14] 2024-05-17 12:52:52,238 | INFO     | sum of square deviations: 681212772.5
[2024-05-17 14:53:14] 2024-05-17 12:52:52,238 | INFO     | sum of deviations: 51811874329.00001
[2024-05-17 14:53:14] 2024-05-17 12:52:52,239 | INFO     | mean x: 1715946120.5
[2024-05-17 14:53:14] 2024-05-17 12:52:52,239 | INFO     | mean y: 2240740.2
[2024-05-17 14:53:14] 2024-05-17 12:52:52,239 | INFO     | -- intersect: -130509676152.37573
[2024-05-17 14:53:14] 2024-05-17 12:52:52,239 | INFO     | intersect: -130509676152.37573
[2024-05-17 14:53:14] 2024-05-17 12:52:52,239 | INFO     | chi2: 3.8834715044933437
[2024-05-17 14:53:14] 2024-05-17 12:52:52,239 | INFO     | current chi2=3.8834715044933437 (change=17.118723489583513 %)
[2024-05-17 14:53:14] 2024-05-17 12:52:52,239 | INFO     | right removable region: 129
[2024-05-17 14:53:14] 2024-05-17 12:52:52,239 | INFO     | model: linear, x: [1715942491.0, 1715942552.0, 1715942613.0, 1715942674.0, 1715942735.0, 1715942796.0, 1715942857.0, 1715942918.0, 1715942979.0, 1715943040.0, 1715
[2024-05-17 14:53:14] 2024-05-17 12:52:52,239 | INFO     | sum of square deviations: 681212772.5
[2024-05-17 14:53:14] 2024-05-17 12:52:52,240 | INFO     | sum of deviations: 15820058938.5
[2024-05-17 14:53:14] 2024-05-17 12:52:52,240 | INFO     | mean x: 1715946425.5
[2024-05-17 14:53:14] 2024-05-17 12:52:52,240 | INFO     | mean y: 2283671.0692307693
[2024-05-17 14:53:14] 2024-05-17 12:52:52,240 | INFO     | -- intersect: -39847781804.20546
[2024-05-17 14:53:14] 2024-05-17 12:52:52,240 | INFO     | intersect: -39847781804.20546
[2024-05-17 14:53:14] 2024-05-17 12:52:52,240 | INFO     | chi2: 2.3062500954532945
[2024-05-17 14:53:14] 2024-05-17 12:52:52,241 | INFO     | current chi2=2.3062500954532945 (change=50.77987526307945 %)
[2024-05-17 14:53:14] 2024-05-17 12:52:52,241 | INFO     | model: linear, x: [1715942796.0, 1715942857.0, 1715942918.0, 1715942979.0, 1715943040.0, 1715943101.0, 1715943162.0, 1715943223.0, 1715943284.0, 1715943345.0, 1715
[2024-05-17 14:53:14] 2024-05-17 12:52:52,241 | INFO     | sum of square deviations: 605592750.0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,241 | INFO     | sum of deviations: -7819900185.0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,242 | INFO     | mean x: 1715946578.0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,242 | INFO     | mean y: 2331380.744
[2024-05-17 14:53:14] 2024-05-17 12:52:52,242 | INFO     | -- intersect: 22160012368.09452
[2024-05-17 14:53:14] 2024-05-17 12:52:52,242 | INFO     | intersect: 22160012368.09452
[2024-05-17 14:53:14] 2024-05-17 12:52:52,242 | INFO     | chi2: 0.8955266537514649
[2024-05-17 14:53:14] 2024-05-17 12:52:52,242 | INFO     | current chi2=0.8955266537514649 (change=61.16957759624727 %)
[2024-05-17 14:53:14] 2024-05-17 12:52:52,242 | INFO     | model: linear, x: [1715943101.0, 1715943162.0, 1715943223.0, 1715943284.0, 1715943345.0, 1715943406.0, 1715943467.0, 1715943528.0, 1715943589.0, 1715943650.0, 1715
[2024-05-17 14:53:14] 2024-05-17 12:52:52,242 | INFO     | sum of square deviations: 535786790.0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,243 | INFO     | sum of deviations: -10284979603.0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,243 | INFO     | mean x: 1715946730.5
[2024-05-17 14:53:14] 2024-05-17 12:52:52,243 | INFO     | mean y: 2336622.4166666665
[2024-05-17 14:53:14] 2024-05-17 12:52:52,243 | INFO     | -- intersect: 32941702527.6997
[2024-05-17 14:53:14] 2024-05-17 12:52:52,243 | INFO     | intersect: 32941702527.6997
[2024-05-17 14:53:14] 2024-05-17 12:52:52,243 | INFO     | chi2: 0.8464421977367451
[2024-05-17 14:53:14] 2024-05-17 12:52:52,243 | INFO     | current chi2=0.8464421977367451 (change=5.4810714800167375 %)
[2024-05-17 14:53:14] 2024-05-17 12:52:52,244 | INFO     | left removable region: 30
[2024-05-17 14:53:14] 2024-05-17 12:52:52,244 | INFO     | model: linear, x: [1715944016.0, 1715944077.0, 1715944138.0, 1715944199.0, 1715944260.0, 1715944321.0, 1715944382.0, 1715944443.0, 1715944504.0, 1715944565.0, 1715
[2024-05-17 14:53:14] 2024-05-17 12:52:52,244 | INFO     | sum of square deviations: 300842850.0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,244 | INFO     | sum of deviations: -1450406028.0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,244 | INFO     | mean x: 1715947005.0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,245 | INFO     | mean y: 2351711.090909091
[2024-05-17 14:53:14] 2024-05-17 12:52:52,245 | INFO     | -- intersect: 8275175478.651103
[2024-05-17 14:53:14] 2024-05-17 12:52:52,245 | INFO     | intersect: 8275175478.651103
[2024-05-17 14:53:14] 2024-05-17 12:52:52,245 | INFO     | chi2: 0.0026687329578845877
[2024-05-17 14:53:14] 2024-05-17 12:52:52,245 | INFO     | -- intersect: 8275175478.651103
[2024-05-17 14:53:14] 2024-05-17 12:52:52,245 | INFO     | current memory leak: -4.82 B/s (using 99 data points, chi2=0.00)
[2024-05-17 14:53:14] 2024-05-17 12:52:52,245 | INFO     | ..............................
[2024-05-17 14:53:14] 2024-05-17 12:52:52,246 | INFO     | . Timing measurements:
[2024-05-17 14:53:14] 2024-05-17 12:52:52,246 | INFO     | . get job = 0 s
[2024-05-17 14:53:14] 2024-05-17 12:52:52,246 | INFO     | . initial setup = 1 s
[2024-05-17 14:53:14] 2024-05-17 12:52:52,246 | INFO     | . payload setup = 5 s
[2024-05-17 14:53:14] 2024-05-17 12:52:52,246 | INFO     | . stage-in = 0 s
[2024-05-17 14:53:14] 2024-05-17 12:52:52,246 | INFO     | . payload execution = 8180 s
[2024-05-17 14:53:14] 2024-05-17 12:52:52,246 | INFO     | . stage-out = 0 s
[2024-05-17 14:53:14] 2024-05-17 12:52:52,246 | INFO     | . log creation = 0 s
[2024-05-17 14:53:14] 2024-05-17 12:52:52,246 | INFO     | ..............................
[2024-05-17 14:53:14] 2024-05-17 12:52:52,339 | INFO     | 
[2024-05-17 14:53:14] 2024-05-17 12:52:52,339 | INFO     | job summary report
[2024-05-17 14:53:14] 2024-05-17 12:52:52,339 | INFO     | --------------------------------------------------
[2024-05-17 14:53:14] 2024-05-17 12:52:52,339 | INFO     | PanDA job id: 6206224009
[2024-05-17 14:53:14] 2024-05-17 12:52:52,339 | INFO     | task id: 38776104
[2024-05-17 14:53:14] 2024-05-17 12:52:52,339 | INFO     | errors: (none)
[2024-05-17 14:53:14] 2024-05-17 12:52:52,339 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 14:53:14] 2024-05-17 12:52:52,339 | INFO     | pilot state: finished 
[2024-05-17 14:53:14] 2024-05-17 12:52:52,339 | INFO     | transexitcode: 0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,339 | INFO     | exeerrorcode: 0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | exeerrordiag: 
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | exitcode: 0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | exitmsg: OK
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | cpuconsumptiontime: 29899 s
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | nevents: 400
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | neventsw: 0
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | pid: 76168
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | pgrp: 76168
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | corecount: 4
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | event service: False
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | sizes: {0: 2391993, 1: 2392192, 5: 2392398, 11: 2392454, 8189: 2420211, 8190: 2429378, 8196: 2429492}
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | --------------------------------------------------
[2024-05-17 14:53:14] 2024-05-17 12:52:52,340 | INFO     | 
[2024-05-17 14:53:14] 2024-05-17 12:52:52,341 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/1
[2024-05-17 14:53:14] 2024-05-17 12:52:52,418 | WARNING  | process 76168 is no longer using CPU - aborting
[2024-05-17 14:53:14] 2024-05-17 12:52:52,423 | INFO     | aborting job monitoring since job object (job id=6206224009) has expired
[2024-05-17 14:53:14] 2024-05-17 12:52:52,442 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,443 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,443 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,443 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,443 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,443 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,443 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,443 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,443 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,443 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,443 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,444 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,444 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,444 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,444 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,444 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,444 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,444 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 14:53:14] 2024-05-17 12:52:52,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,444 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 14:53:14] 2024-05-17 12:52:52,444 | INFO     | job 6206224009 has completed (purged errors)
[2024-05-17 14:53:14] 2024-05-17 12:52:52,444 | INFO     | overall cleanup function is called
[2024-05-17 14:53:14] 2024-05-17 12:52:53,452 | INFO     | --- collectZombieJob: --- 10, [76168]
[2024-05-17 14:53:14] 2024-05-17 12:52:53,452 | INFO     | zombie collector waiting for pid 76168
[2024-05-17 14:53:14] 2024-05-17 12:52:53,452 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 14:53:14] 2024-05-17 12:52:54,457 | INFO     | collected zombie processes
[2024-05-17 14:53:14] 2024-05-17 12:52:54,457 | INFO     | will now attempt to kill all subprocesses of pid=76168
[2024-05-17 14:53:14] 2024-05-17 12:52:54,657 | INFO     | process IDs to be killed: [76168] (in reverse order)
[2024-05-17 14:53:14] 2024-05-17 12:52:54,813 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 14:53:14] 2024-05-17 12:52:54,814 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 14:53:14] 2024-05-17 12:52:54,835 | INFO     | did not find any defunct processes belonging to 76168
[2024-05-17 14:53:14] 2024-05-17 12:52:54,849 | INFO     | did not find any defunct processes belonging to 76168
[2024-05-17 14:53:14] 2024-05-17 12:52:54,849 | INFO     | ready for new job
[2024-05-17 14:53:14] 2024-05-17 12:52:54,850 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 14:53:14] 2024-05-17 12:52:54,851 | INFO     | *************************************
[2024-05-17 14:53:14] 2024-05-17 12:52:54,851 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 14:53:14] 2024-05-17 12:52:54,851 | INFO     | *************************************
[2024-05-17 14:53:14] 2024-05-17 12:52:54,851 | INFO     | 
[2024-05-17 14:53:14] 2024-05-17 12:52:54,856 | INFO     | architecture information:
[2024-05-17 14:53:14] 2024-05-17 12:52:54,856 | INFO     | executing command: cat /etc/os-release
[2024-05-17 14:53:14] 2024-05-17 12:52:54,871 | INFO     | cat /etc/os-release:
[2024-05-17 14:53:14] NAME="CentOS Linux"
[2024-05-17 14:53:14] VERSION="7 (Core)"
[2024-05-17 14:53:14] ID="centos"
[2024-05-17 14:53:14] ID_LIKE="rhel fedora"
[2024-05-17 14:53:14] VERSION_ID="7"
[2024-05-17 14:53:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 14:53:14] ANSI_COLOR="0;31"
[2024-05-17 14:53:14] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 14:53:14] HOME_URL="https://www.centos.org/"
[2024-05-17 14:53:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 14:53:14] 
[2024-05-17 14:53:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 14:53:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 14:53:14] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 14:53:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 14:53:14] 
[2024-05-17 14:53:14] 2024-05-17 12:52:54,872 | INFO     | *************************************
[2024-05-17 14:53:14] 2024-05-17 12:52:55,375 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/1
[2024-05-17 14:53:14] 2024-05-17 12:52:55,397 | INFO     | sufficient remaining disk space (2982830669824 B)
[2024-05-17 14:53:14] 2024-05-17 12:52:55,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 14:53:14] 2024-05-17 12:52:55,397 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 14:53:14] 2024-05-17 12:52:55,557 | INFO     | all payload control threads have been joined
[2024-05-17 14:53:14] 2024-05-17 12:52:55,664 | INFO     | all data control threads have been joined
[2024-05-17 14:53:14] 2024-05-17 12:52:55,798 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 14:53:14] 2024-05-17 12:52:55,798 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 14:53:14] 2024-05-17 12:52:55,798 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 14:53:14] 2024-05-17 12:52:55,931 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 14:53:14] 2024-05-17 12:52:55,931 | INFO     | aborting loop
[2024-05-17 14:53:14] 2024-05-17 12:52:56,165 | INFO     | all job control threads have been joined
[2024-05-17 14:53:14] 2024-05-17 12:52:56,402 | INFO     | [job] retrieve thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:56,563 | INFO     | [payload] control thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:56,669 | INFO     | [data] control thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:56,688 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:56,762 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 14:53:14] 2024-05-17 12:52:56,817 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 14:53:14] 2024-05-17 12:52:56,936 | INFO     | [job] job monitor thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:57,036 | INFO     | [payload] failed_post thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:57,045 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:57,138 | INFO     | [job] validate thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:57,170 | INFO     | [job] control thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:57,244 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:57,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 14:53:14] 2024-05-17 12:52:57,637 | INFO     | [data] copytool_in thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:57,841 | INFO     | [payload] validate_post thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:58,353 | INFO     | [job] queue monitor thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:52:58,767 | INFO     | [data] copytool_out thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:53:00,822 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:53:05,926 | INFO     | job.realtimelogging is not enabled
[2024-05-17 14:53:14] 2024-05-17 12:53:06,931 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 14:53:14] 2024-05-17 12:53:08,417 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47036695352384)>', '<ExcThread(monitor, started 47036866602752)>']
[2024-05-17 14:53:14] 2024-05-17 12:53:08,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 14:53:14] 2024-05-17 12:53:08,863 | INFO     | [monitor] control thread has ended
[2024-05-17 14:53:14] 2024-05-17 12:53:13,443 | INFO     | all workflow threads have been joined
[2024-05-17 14:53:14] 2024-05-17 12:53:13,443 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 14:53:14] 2024-05-17 12:53:13,443 | INFO     | traces error code: 0
[2024-05-17 14:53:14] 2024-05-17 12:53:13,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 14:53:14] 2024-05-17 12:53:13,510 [wrapper] ==== pilot stdout END ====
[2024-05-17 14:53:14] 2024-05-17 12:53:13,512 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 14:53:14] 2024-05-17 12:53:13,514 [wrapper] pilotpid: 68563
[2024-05-17 14:53:14] 2024-05-17 12:53:13,516 [wrapper] Pilot exit status: 0
[2024-05-17 14:53:14] 2024-05-17 12:53:13,524 [wrapper] pandaids: 6206224009
[2024-05-17 14:53:14] 2024-05-17 12:53:13,628 [wrapper] cleanup: SIGTERM to supervisor_pilot  740971 68564
[2024-05-17 14:53:14] 2024-05-17 12:53:13,631 [wrapper] Test setup, not cleaning
[2024-05-17 14:53:14] 2024-05-17 12:53:13,634 [wrapper] ==== wrapper stdout END ====
[2024-05-17 14:53:14] 2024-05-17 12:53:13,636 [wrapper] ==== wrapper stderr END ====
[2024-05-17 14:53:14] 2024-05-17 12:53:13,641 [wrapper] apfmon messages muted
[2024-05-17 14:53:14]  *** Error codes and diagnostics ***
[2024-05-17 14:53:14]     "exeErrorCode": 0,
[2024-05-17 14:53:14]     "exeErrorDiag": "",
[2024-05-17 14:53:14]     "pilotErrorCode": 0,
[2024-05-17 14:53:14]     "pilotErrorDiag": "",
[2024-05-17 14:53:14]  *** Listing of results directory ***
[2024-05-17 14:53:14] total 1133496
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc    467845 May 14 21:09 pilot3.tar.gz
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc      5633 May 14 21:09 queuedata.json
[2024-05-17 14:53:14] -rwx------ 1 boinc boinc     32251 May 14 21:10 runpilot2-wrapper.sh
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc       100 May 17 06:00 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 14:53:14] -rwxr-xr-x 1 boinc boinc      7986 May 17 06:00 run_atlas
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc       105 May 17 06:00 job.xml
[2024-05-17 14:53:14] -rw------- 2 boinc boinc 323747840 May 17 06:12 copy_7JuL6t
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc      6646 May 17 12:35 init_data.xml
[2024-05-17 14:53:14] -rw-r--r-- 2 boinc boinc 598866659 May 17 12:35 EVNT.38776100._000125.pool.root.1
[2024-05-17 14:53:14] -rw-r--r-- 2 boinc boinc     17537 May 17 12:35 start_atlas.sh
[2024-05-17 14:53:14] drwxrwx--x 2 boinc boinc      4096 May 17 12:35 shared
[2024-05-17 14:53:14] -rw-r--r-- 2 boinc boinc    480004 May 17 12:35 input.tar.gz
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc         0 May 17 12:35 boinc_lockfile
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc      2641 May 17 12:35 pandaJob.out
[2024-05-17 14:53:14] -rw------- 1 boinc boinc       424 May 17 12:35 setup.sh.local
[2024-05-17 14:53:14] -rw------- 1 boinc boinc   1019392 May 17 12:36 agis_schedconf.cvmfs.json
[2024-05-17 14:53:14] -rw------- 1 boinc boinc         0 May 17 12:36 agis_ddmendpoints.agis.ALL.json
[2024-05-17 14:53:14] -rw------- 1 boinc boinc   1324701 May 17 12:36 cric_ddmendpoints.json
[2024-05-17 14:53:14] drwx------ 4 boinc boinc      4096 May 17 12:36 pilot3
[2024-05-17 14:53:14] -rw------- 1 boinc boinc 232312790 May 17 14:52 HITS.38776104._003013.pool.root.1
[2024-05-17 14:53:14] -rw------- 1 boinc boinc        95 May 17 14:52 pilot_heartbeat.json
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc       531 May 17 14:52 boinc_task_state.xml
[2024-05-17 14:53:14] -rw------- 1 boinc boinc      1037 May 17 14:52 memory_monitor_summary.json
[2024-05-17 14:53:14] -rw------- 1 boinc boinc    280538 May 17 14:52 log.38776104._003013.job.log.tgz.1
[2024-05-17 14:53:14] -rw------- 1 boinc boinc      7712 May 17 14:52 heartbeat.json
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc      8192 May 17 14:53 boinc_mmap_file
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc        27 May 17 14:53 wrapper_checkpoint.txt
[2024-05-17 14:53:14] -rw------- 1 boinc boinc      4295 May 17 14:53 pilotlog.txt
[2024-05-17 14:53:14] -rw------- 1 boinc boinc    838782 May 17 14:53 log.38776104._003013.job.log.1
[2024-05-17 14:53:14] -rw------- 1 boinc boinc       357 May 17 14:53 output.list
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc       620 May 17 14:53 runtime_log
[2024-05-17 14:53:14] -rw------- 1 boinc boinc   1136640 May 17 14:53 result.tar.gz
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc     11428 May 17 14:53 runtime_log.err
[2024-05-17 14:53:14] -rw------- 1 boinc boinc       654 May 17 14:53 cm0MDm1iCR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmlDNKDmBaeBBn.diag
[2024-05-17 14:53:14] -rw-r--r-- 1 boinc boinc     21256 May 17 14:53 stderr.txt
[2024-05-17 14:53:14] HITS file was successfully produced:
[2024-05-17 14:53:14] -rw------- 1 boinc boinc 232312790 May 17 14:52 shared/HITS.pool.root.1
[2024-05-17 14:53:14]  *** Contents of shared directory: ***
[2024-05-17 14:53:14] total 1129476
[2024-05-17 14:53:14] -rw------- 2 boinc boinc 323747840 May 17 06:12 copy_7JuL6t
[2024-05-17 14:53:14] -rw-r--r-- 2 boinc boinc 598866659 May 17 12:35 ATLAS.root_0
[2024-05-17 14:53:14] -rw-r--r-- 2 boinc boinc     17537 May 17 12:35 start_atlas.sh
[2024-05-17 14:53:14] -rw-r--r-- 2 boinc boinc    480004 May 17 12:35 input.tar.gz
[2024-05-17 14:53:14] -rw------- 1 boinc boinc 232312790 May 17 14:52 HITS.pool.root.1
[2024-05-17 14:53:14] -rw------- 1 boinc boinc   1136640 May 17 14:53 result.tar.gz
14:53:15 (63952): run_atlas exited; CPU time 29711.356004
14:53:15 (63952): called boinc_finish(0)

</stderr_txt>
]]>

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