Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-15 15:13:02 (20421): Detected: vboxwrapper 26206
2024-05-15 15:13:02 (20421): Detected: BOINC client v7.24.1
2024-05-15 15:13:02 (20421): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-05-15 15:13:02 (20421): Successfully copied 'init_data.xml' to the shared directory.
2024-05-15 15:13:02 (20421): Create VM. (boinc_9f0635c6d9709bae, slot#2)
2024-05-15 15:13:03 (20421): Setting Memory Size for VM. (4300MB)
2024-05-15 15:13:03 (20421): Setting CPU Count for VM. (3)
2024-05-15 15:13:03 (20421): Setting Chipset Options for VM.
2024-05-15 15:13:03 (20421): Setting Graphics Controller Options for VM.
2024-05-15 15:13:03 (20421): Setting Boot Options for VM.
2024-05-15 15:13:03 (20421): Setting Network Configuration for NAT.
2024-05-15 15:13:03 (20421): Enabling VM Network Access.
2024-05-15 15:13:03 (20421): Disabling USB Support for VM.
2024-05-15 15:13:03 (20421): Disabling COM Port Support for VM.
2024-05-15 15:13:03 (20421): Disabling LPT Port Support for VM.
2024-05-15 15:13:04 (20421): Disabling Audio Support for VM.
2024-05-15 15:13:04 (20421): Disabling Clipboard Support for VM.
2024-05-15 15:13:04 (20421): Disabling Drag and Drop Support for VM.
2024-05-15 15:13:04 (20421): Adding storage controller(s) to VM.
2024-05-15 15:13:04 (20421): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-15 15:13:06 (20421): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-15 15:13:06 (20421): forwarding host port 52149 to guest port 80
2024-05-15 15:13:06 (20421): Enabling remote desktop for VM.
2024-05-15 15:13:06 (20421): Required extension pack not installed, remote desktop not enabled.
2024-05-15 15:13:06 (20421): Enabling shared directory for VM.
2024-05-15 15:13:06 (20421): Starting VM using VBoxManage interface. (boinc_9f0635c6d9709bae, slot#2)
2024-05-15 15:13:08 (20421): Successfully started VM. (PID = '20710')
2024-05-15 15:13:08 (20421): Reporting VM Process ID to BOINC.
2024-05-15 15:13:08 (20421): Guest Log: BIOS: VirtualBox 7.0.18
2024-05-15 15:13:08 (20421): Guest Log: CPUID EDX: 0x178bfbff
2024-05-15 15:13:08 (20421): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-15 15:13:08 (20421): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-15 15:13:08 (20421): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-15 15:13:08 (20421): Detected: Web Application Enabled (http://localhost:52149)
2024-05-15 15:13:08 (20421): Preference change detected
2024-05-15 15:13:08 (20421): Setting CPU throttle for VM. (100%)
2024-05-15 15:13:08 (20421): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-15 15:13:10 (20421): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-15 15:13:10 (20421): Guest Log: BIOS: Booting from Hard Disk...
2024-05-15 15:13:13 (20421): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-15 15:13:13 (20421): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-15 15:13:13 (20421): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-15 15:13:19 (20421): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-15 15:13:19 (20421): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-15 15:13:23 (20421): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-15 15:13:23 (20421): Guest Log: 00:00:00.000138 main     Log opened 2024-05-15T13:13:22.214983000Z
2024-05-15 15:13:23 (20421): Guest Log: 00:00:00.000206 main     OS Product: Linux
2024-05-15 15:13:23 (20421): Guest Log: 00:00:00.000219 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-15 15:13:23 (20421): Guest Log: 00:00:00.000229 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-15 15:13:23 (20421): Guest Log: 00:00:00.000239 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-15 15:13:23 (20421): Guest Log: 00:00:00.000239 main     Process ID: 1271
2024-05-15 15:13:23 (20421): Guest Log: 00:00:00.000240 main     Package type: LINUX_64BITS_GENERIC
2024-05-15 15:13:23 (20421): Guest Log: 00:00:00.010852 main     5.2.32 r132073 started. Verbose level = 0
2024-05-15 15:13:23 (20421): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-15 15:13:23 (20421): Guest Log: [INFO] Mounting shared directory
2024-05-15 15:13:23 (20421): Guest Log: [INFO] Checking for init_data.xml
2024-05-15 15:13:26 (20421): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-15 15:13:26 (20421): Guest Log: [INFO] Detected branch: prod
2024-05-15 15:13:26 (20421): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-15 15:13:26 (20421): Guest Log: Copying input files
2024-05-15 15:13:29 (20421): Guest Log: Copied input files into RunAtlas.
2024-05-15 15:13:29 (20421): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-15 15:13:29 (20421): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-15 15:13:29 (20421): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-15 15:13:29 (20421): Guest Log: Further information can be found at the LHC@home message board.
2024-05-15 15:13:35 (20421): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-15 15:13:35 (20421): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-15 15:13:35 (20421): Guest Log: 2.6.3.0 1543 0 30008 132761 4 1 3116989 4096000 0 65024 0 0 n/a 1 1 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-05-15 15:13:36 (20421): Guest Log: copied the webapp to /var/www
2024-05-15 15:13:36 (20421): Guest Log: ATHENA_PROC_NUMBER=3
2024-05-15 15:13:36 (20421): Guest Log: ATHENA_CORE_NUMBER=3
2024-05-15 15:13:36 (20421): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-15 15:13:36 (20421): Guest Log:  *** Starting ATLAS job. (PandaID=6206196896 taskID=38920995) ***
2024-05-15 16:43:32 (20421): VM state change detected. (old = 'running', new = 'paused')
2024-05-15 19:19:30 (20421): VM state change detected. (old = 'paused', new = 'running')
2024-05-15 19:19:39 (20421): Guest Log: 01:34:23.709964 timesync vgsvcTimeSyncWorker: Radical host time change: 9 367 185 000 000ns (HostNow=1 715 793 521 003 000 000 ns HostLast=1 715 784 153 818 000 000 ns)
2024-05-15 19:19:48 (20421): Guest Log: 01:34:33.711028 timesync vgsvcTimeSyncWorker: Radical guest time change: 9 065 101 090 000ns (GuestNow=1 715 793 531 014 971 000 ns GuestLast=1 715 784 465 913 881 000 ns fSetTimeLastLoop=true )
2024-05-15 19:28:08 (20421): Status Report: Elapsed Time: '6000.000000'
2024-05-15 19:28:08 (20421): Status Report: CPU Time: '15721.940000'
2024-05-15 20:18:02 (20421): VM state change detected. (old = 'running', new = 'paused')
2024-05-15 20:47:02 (20421): VM state change detected. (old = 'paused', new = 'running')
2024-05-15 20:50:04 (20421): VM state change detected. (old = 'running', new = 'paused')
2024-05-15 22:06:34 (20421): VM state change detected. (old = 'paused', new = 'running')
2024-05-15 22:06:42 (20421): Guest Log: 02:38:44.673020 timesync vgsvcTimeSyncWorker: Radical host time change: 4 599 163 000 000ns (HostNow=1 715 803 589 664 000 000 ns HostLast=1 715 798 990 501 000 000 ns)
2024-05-15 22:06:52 (20421): Guest Log: 02:38:54.684053 timesync vgsvcTimeSyncWorker: Radical guest time change: 4 581 307 133 000ns (GuestNow=1 715 803 599 675 062 000 ns GuestLast=1 715 799 018 367 929 000 ns fSetTimeLastLoop=true )
2024-05-15 22:52:42 (20421): Status Report: Elapsed Time: '12000.000000'
2024-05-15 22:52:42 (20421): Status Report: CPU Time: '33512.320000'
2024-05-15 23:16:28 (20421): Guest Log:  *** Job finished ***
2024-05-15 23:16:28 (20421): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:13,338 | INFO     | [data] queue_monitor thread has finished
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:16,754 | INFO     | job.realtimelogging is not enabled
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:17,756 | INFO     | [payload] run_realtimelog thread has finished
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:19,573 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603930117952)>', '<ExcThread(monitor, started 140603497096960)>']
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:19,787 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:19,787 | INFO     | [monitor] control thread has ended
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,580 | INFO     | all workflow threads have been joined
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,580 | INFO     | end of generic workflow (traces error code: 0)
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,580 | INFO     | traces error code: 0
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,624 [wrapper] ==== pilot stdout END ====
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,627 [wrapper] ==== wrapper stdout RESUME ====
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,629 [wrapper] pilotpid: 6410
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,631 [wrapper] Pilot exit status: 0
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,680 [wrapper] pandaids: 6206196896
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,701 [wrapper] cleanup: SIGTERM to supervisor_pilot 20628 6411
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,704 [wrapper] Test setup, not cleaning
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,707 [wrapper] ==== wrapper stdout END ====
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,709 [wrapper] ==== wrapper stderr END ====
2024-05-15 23:16:28 (20421): Guest Log: 2024-05-15 21:19:24,716 [wrapper] apfmon messages muted
2024-05-15 23:16:28 (20421): Guest Log:  *** Error codes and diagnostics ***
2024-05-15 23:16:28 (20421): Guest Log:     "exeErrorCode": 0,
2024-05-15 23:16:28 (20421): Guest Log:     "exeErrorDiag": "",
2024-05-15 23:16:28 (20421): Guest Log:     "pilotErrorCode": 0,
2024-05-15 23:16:28 (20421): Guest Log:     "pilotErrorDiag": "",
2024-05-15 23:16:28 (20421): Guest Log:  *** Listing of results directory ***
2024-05-15 23:16:28 (20421): Guest Log: total 352112
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 14 17:30 pilot3.tar.gz
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 14 17:56 queuedata.json
2024-05-15 23:16:28 (20421): Guest Log: -rwx------. 1 atlas atlas     32251 May 14 17:57 runpilot2-wrapper.sh
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 atlas atlas    480004 May 15 13:13 input.tar.gz
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 atlas atlas     17537 May 15 13:13 start_atlas.sh
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 atlas atlas      7114 May 15 13:13 init_data.xml
2024-05-15 23:16:28 (20421): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 15 13:13 EVNT.38776180._000032.pool.root.1 -> /data/./ATLAS.root_0
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 atlas atlas      2609 May 15 13:13 pandaJob.out
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas       424 May 15 13:13 setup.sh.local
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas   1010550 May 15 13:14 agis_schedconf.cvmfs.json
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas   1325758 May 15 13:14 cric_ddmendpoints.json
2024-05-15 23:16:28 (20421): Guest Log: drwx------. 4 atlas atlas      4096 May 15 13:14 pilot3
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas 353871427 May 15 21:18 HITS.38920995._000790.pool.root.1
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas        97 May 15 21:18 pilot_heartbeat.json
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas      1025 May 15 21:18 memory_monitor_summary.json
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas         0 May 15 21:18 agis_ddmendpoints.agis.ALL.json
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas    318805 May 15 21:18 log.38920995._000790.job.log.tgz.1
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas      7695 May 15 21:19 heartbeat.json
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas      4343 May 15 21:19 pilotlog.txt
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas   1303625 May 15 21:19 log.38920995._000790.job.log.1
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas       357 May 15 21:19 output.list
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 15 21:19 runtime_log
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas   1638400 May 15 21:19 result.tar.gz
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 atlas atlas     10949 May 15 21:19 runtime_log.err
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas       653 May 15 21:19 IfiLDm9ZBR5n7Olcko1bjSoqABFKDmABFKDmOtvXDmcLYKDmGyv6hm.diag
2024-05-15 23:16:28 (20421): Guest Log: Looking for outputfile HITS.38920995._000790.pool.root.1
2024-05-15 23:16:28 (20421): Guest Log: HITS file was successfully produced
2024-05-15 23:16:28 (20421): Guest Log: -rw-------. 1 atlas atlas 353871427 May 15 21:18 /home/atlas/RunAtlas/HITS.38920995._000790.pool.root.1
2024-05-15 23:16:28 (20421): Guest Log: Successfully finished the ATLAS job!
2024-05-15 23:16:28 (20421): Guest Log: Copying the results back to the shared directory!
2024-05-15 23:16:28 (20421): Guest Log:  *** Contents of shared directory: ***
2024-05-15 23:16:28 (20421): Guest Log: total 616812
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 root root 629462103 May 15 13:13 ATLAS.root_0
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 root root      7114 May 15 13:13 init_data.xml
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 root root    480004 May 15 13:13 input.tar.gz
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 root root   1638400 May 15 21:16 result.tar.gz
2024-05-15 23:16:28 (20421): Guest Log: -rw-r--r--. 1 root root     17537 May 15 13:13 start_atlas.sh
2024-05-15 23:16:28 (20421): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-15 23:16:28 (20421): VM Completion File Detected.
2024-05-15 23:16:28 (20421): Powering off VM.
2024-05-15 23:16:29 (20421): Successfully stopped VM.
2024-05-15 23:16:29 (20421): Deregistering VM. (boinc_9f0635c6d9709bae, slot#2)
2024-05-15 23:16:29 (20421): Removing network bandwidth throttle group from VM.
2024-05-15 23:16:29 (20421): Removing VM from VirtualBox.
23:16:34 (20421): called boinc_finish(0)

</stderr_txt>
]]>

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