Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-15 11:25:50 (417566): Detected: vboxwrapper 26206
2024-05-15 11:25:50 (417566): Detected: BOINC client v7.24.1
2024-05-15 11:25:50 (417566): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-05-15 11:25:51 (417566): Successfully copied 'init_data.xml' to the shared directory.
2024-05-15 11:25:51 (417566): Create VM. (boinc_4e8005a8709ca03d, slot#0)
2024-05-15 11:25:51 (417566): Setting Memory Size for VM. (4600MB)
2024-05-15 11:25:51 (417566): Setting CPU Count for VM. (6)
2024-05-15 11:25:51 (417566): Setting Chipset Options for VM.
2024-05-15 11:25:51 (417566): Setting Graphics Controller Options for VM.
2024-05-15 11:25:52 (417566): Setting Boot Options for VM.
2024-05-15 11:25:52 (417566): Setting Network Configuration for NAT.
2024-05-15 11:25:52 (417566): Enabling VM Network Access.
2024-05-15 11:25:52 (417566): Disabling USB Support for VM.
2024-05-15 11:25:52 (417566): Disabling COM Port Support for VM.
2024-05-15 11:25:52 (417566): Disabling LPT Port Support for VM.
2024-05-15 11:25:53 (417566): Disabling Audio Support for VM.
2024-05-15 11:25:53 (417566): Disabling Clipboard Support for VM.
2024-05-15 11:25:53 (417566): Disabling Drag and Drop Support for VM.
2024-05-15 11:25:53 (417566): Adding storage controller(s) to VM.
2024-05-15 11:25:53 (417566): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-15 11:25:55 (417566): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-15 11:25:55 (417566): forwarding host port 59491 to guest port 80
2024-05-15 11:25:56 (417566): Enabling remote desktop for VM.
2024-05-15 11:25:56 (417566): Required extension pack not installed, remote desktop not enabled.
2024-05-15 11:25:56 (417566): Enabling shared directory for VM.
2024-05-15 11:25:56 (417566): Starting VM using VBoxManage interface. (boinc_4e8005a8709ca03d, slot#0)
2024-05-15 11:25:57 (417566): Successfully started VM. (PID = '417821')
2024-05-15 11:25:57 (417566): Reporting VM Process ID to BOINC.
2024-05-15 11:25:57 (417566): Guest Log: BIOS: VirtualBox 7.0.14
2024-05-15 11:25:57 (417566): Guest Log: CPUID EDX: 0x178bfbff
2024-05-15 11:25:57 (417566): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-15 11:25:57 (417566): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-15 11:25:57 (417566): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-15 11:25:57 (417566): Detected: Web Application Enabled (http://localhost:59491)
2024-05-15 11:25:57 (417566): Preference change detected
2024-05-15 11:25:57 (417566): Setting CPU throttle for VM. (50%)
2024-05-15 11:25:57 (417566): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-15 11:25:59 (417566): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-15 11:25:59 (417566): Guest Log: BIOS: Booting from Hard Disk...
2024-05-15 11:26:04 (417566): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-15 11:26:04 (417566): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-15 11:26:04 (417566): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-15 11:26:13 (417566): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-15 11:26:13 (417566): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-15 11:26:31 (417566): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-15 11:26:31 (417566): Guest Log: 00:00:00.000092 main     Log opened 2024-05-15T09:26:29.783287000Z
2024-05-15 11:26:31 (417566): Guest Log: 00:00:00.000183 main     OS Product: Linux
2024-05-15 11:26:31 (417566): Guest Log: 00:00:00.000207 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-15 11:26:31 (417566): Guest Log: 00:00:00.000225 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-15 11:26:31 (417566): Guest Log: 00:00:00.000243 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-15 11:26:31 (417566): Guest Log: 00:00:00.000243 main     Process ID: 1326
2024-05-15 11:26:31 (417566): Guest Log: 00:00:00.000244 main     Package type: LINUX_64BITS_GENERIC
2024-05-15 11:26:31 (417566): Guest Log: 00:00:00.001305 main     5.2.32 r132073 started. Verbose level = 0
2024-05-15 11:26:32 (417566): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-15 11:26:32 (417566): Guest Log: [INFO] Mounting shared directory
2024-05-15 11:26:32 (417566): Guest Log: [INFO] Checking for init_data.xml
2024-05-15 11:26:36 (417566): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-15 11:26:36 (417566): Guest Log: [INFO] Detected branch: prod
2024-05-15 11:26:37 (417566): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-15 11:26:37 (417566): Guest Log: Copying input files
2024-05-15 11:26:48 (417566): Guest Log: Copied input files into RunAtlas.
2024-05-15 11:26:49 (417566): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-15 11:26:49 (417566): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-15 11:26:49 (417566): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-15 11:26:49 (417566): Guest Log: Further information can be found at the LHC@home message board.
2024-05-15 11:26:58 (417566): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-15 11:26:58 (417566): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-15 11:26:58 (417566): Guest Log: 2.6.3.0 1605 0 32200 132755 4 1 3116989 4096000 0 65024 0 0 n/a 1 3 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-05-15 11:27:02 (417566): Guest Log: copied the webapp to /var/www
2024-05-15 11:27:02 (417566): Guest Log: ATHENA_PROC_NUMBER=6
2024-05-15 11:27:03 (417566): Guest Log: ATHENA_CORE_NUMBER=6
2024-05-15 11:27:03 (417566): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-15 11:27:03 (417566): Guest Log:  *** Starting ATLAS job. (PandaID=6206195869 taskID=38920995) ***
2024-05-15 13:04:58 (417566): Status Report: Elapsed Time: '6000.000000'
2024-05-15 13:04:58 (417566): Status Report: CPU Time: '14850.290000'
2024-05-15 14:43:58 (417566): Status Report: Elapsed Time: '12000.000000'
2024-05-15 14:43:58 (417566): Status Report: CPU Time: '34487.740000'
2024-05-15 16:22:59 (417566): Status Report: Elapsed Time: '18000.000000'
2024-05-15 16:22:59 (417566): Status Report: CPU Time: '54195.420000'
2024-05-15 18:01:59 (417566): Status Report: Elapsed Time: '24000.000000'
2024-05-15 18:01:59 (417566): Status Report: CPU Time: '73741.300000'
2024-05-15 19:41:00 (417566): Status Report: Elapsed Time: '30000.000000'
2024-05-15 19:41:00 (417566): Status Report: CPU Time: '93394.170000'
2024-05-15 20:53:12 (417566): Guest Log:  *** Job finished ***
2024-05-15 20:53:12 (417566): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:00,179 | INFO     | [job] control thread has finished
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:00,918 | INFO     | [job] queue monitor thread has finished
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:01,543 | INFO     | [data] queue_monitor thread has finished
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:02,743 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140644142450496)>', '<ExcThread(monitor, started 140643695306496)>']
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:03,560 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:03,561 | INFO     | [monitor] control thread has ended
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:07,762 | INFO     | all workflow threads have been joined
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:07,763 | INFO     | end of generic workflow (traces error code: 0)
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:07,763 | INFO     | traces error code: 0
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:07,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:08,164 [wrapper] ==== pilot stdout END ====
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:08,167 [wrapper] ==== wrapper stdout RESUME ====
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:08,171 [wrapper] pilotpid: 6504
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:08,174 [wrapper] Pilot exit status: 0
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:08,311 [wrapper] pandaids: 6206195869
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:08,384 [wrapper] cleanup: SIGTERM to supervisor_pilot  5044 6505
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:08,388 [wrapper] Test setup, not cleaning
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:08,392 [wrapper] ==== wrapper stdout END ====
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:08,396 [wrapper] ==== wrapper stderr END ====
2024-05-15 20:53:12 (417566): Guest Log: 2024-05-15 18:53:08,403 [wrapper] apfmon messages muted
2024-05-15 20:53:12 (417566): Guest Log:  *** Error codes and diagnostics ***
2024-05-15 20:53:12 (417566): Guest Log:     "exeErrorCode": 0,
2024-05-15 20:53:12 (417566): Guest Log:     "exeErrorDiag": "",
2024-05-15 20:53:12 (417566): Guest Log:     "pilotErrorCode": 0,
2024-05-15 20:53:12 (417566): Guest Log:     "pilotErrorDiag": "",
2024-05-15 20:53:12 (417566): Guest Log:  *** Listing of results directory ***
2024-05-15 20:53:12 (417566): Guest Log: total 351076
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 14 17:30 pilot3.tar.gz
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 14 17:36 queuedata.json
2024-05-15 20:53:12 (417566): Guest Log: -rwx------. 1 atlas atlas     32251 May 14 17:36 runpilot2-wrapper.sh
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 atlas atlas    479992 May 15 09:26 input.tar.gz
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 atlas atlas      6633 May 15 09:26 init_data.xml
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 atlas atlas     17537 May 15 09:26 start_atlas.sh
2024-05-15 20:53:12 (417566): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 15 09:26 EVNT.38776180._000022.pool.root.1 -> /data/./ATLAS.root_0
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 atlas atlas      2611 May 15 09:27 pandaJob.out
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas       424 May 15 09:27 setup.sh.local
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas   1010936 May 15 09:27 agis_schedconf.cvmfs.json
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas   1324588 May 15 09:27 cric_ddmendpoints.json
2024-05-15 20:53:12 (417566): Guest Log: drwx------. 4 atlas atlas      4096 May 15 09:27 pilot3
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas 350454711 May 15 18:51 HITS.38920995._000545.pool.root.1
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas        95 May 15 18:52 pilot_heartbeat.json
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas      1032 May 15 18:52 memory_monitor_summary.json
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas         0 May 15 18:52 agis_ddmendpoints.agis.ALL.json
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas    482073 May 15 18:52 log.38920995._000545.job.log.tgz.1
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas      7744 May 15 18:52 heartbeat.json
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas      4271 May 15 18:53 pilotlog.txt
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas   2311994 May 15 18:53 log.38920995._000545.job.log.1
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas       357 May 15 18:53 output.list
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 15 18:53 runtime_log
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas   2816000 May 15 18:53 result.tar.gz
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 atlas atlas     10976 May 15 18:53 runtime_log.err
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas       663 May 15 18:53 bUOKDmyFBR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmk7MKDmedYBDn.diag
2024-05-15 20:53:12 (417566): Guest Log: Looking for outputfile HITS.38920995._000545.pool.root.1
2024-05-15 20:53:12 (417566): Guest Log: HITS file was successfully produced
2024-05-15 20:53:12 (417566): Guest Log: -rw-------. 1 atlas atlas 350454711 May 15 18:51 /home/atlas/RunAtlas/HITS.38920995._000545.pool.root.1
2024-05-15 20:53:12 (417566): Guest Log: Successfully finished the ATLAS job!
2024-05-15 20:53:12 (417566): Guest Log: Copying the results back to the shared directory!
2024-05-15 20:53:12 (417566): Guest Log:  *** Contents of shared directory: ***
2024-05-15 20:53:12 (417566): Guest Log: total 621572
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 root root 633153088 May 15 09:25 ATLAS.root_0
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 root root      6633 May 15 09:25 init_data.xml
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 root root    479992 May 15 09:25 input.tar.gz
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 root root   2816000 May 15 18:53 result.tar.gz
2024-05-15 20:53:12 (417566): Guest Log: -rw-r--r--. 1 root root     17537 May 15 09:25 start_atlas.sh
2024-05-15 20:53:12 (417566): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-15 20:53:12 (417566): VM Completion File Detected.
2024-05-15 20:53:12 (417566): Powering off VM.
2024-05-15 20:53:12 (417566): Successfully stopped VM.
2024-05-15 20:53:12 (417566): Deregistering VM. (boinc_4e8005a8709ca03d, slot#0)
2024-05-15 20:53:12 (417566): Removing network bandwidth throttle group from VM.
2024-05-15 20:53:12 (417566): Removing VM from VirtualBox.
20:53:18 (417566): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN