Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
07:08:49 (238385): wrapper (7.7.26015): starting
07:08:49 (238385): wrapper: running run_atlas (--nthreads 12)
[2024-05-15 07:08:49] Arguments: --nthreads 12
[2024-05-15 07:08:49] Threads: 12
[2024-05-15 07:08:49] Checking for CVMFS
[2024-05-15 07:08:49] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-15 07:08:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-15 07:08:50] Running cvmfs_config stat atlas.cern.ch
[2024-05-15 07:08:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-15 07:08:50] 2.10.1.0 70285 180699 162184 132761 3 134 41088047 45568001 8658 130560 0 613353923 99.753 408246182 3847 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-15 07:08:50] CVMFS is ok
[2024-05-15 07:08:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 07:08:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 07:08:50] Further information can be found at the LHC@home message board.
[2024-05-15 07:08:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 07:08:50] Checking for apptainer binary...
[2024-05-15 07:08:50] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-15 07:08:50] Running /usr/bin/apptainer --version
[2024-05-15 07:08:50] apptainer version 1.1.8-1.el7
[2024-05-15 07:08:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 07:08:51] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0055.triumf.lcg
[2024-05-15 07:08:51] apptainer works
[2024-05-15 07:08:51] Set ATHENA_PROC_NUMBER=12
[2024-05-15 07:08:51] Set ATHENA_CORE_NUMBER=12
[2024-05-15 07:08:51] Starting ATLAS job with PandaID=6206085265
[2024-05-15 07:08:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 08:22:43]  *** The last 200 lines of the pilot log: ***
[2024-05-15 08:22:43]  is_tar=False
[2024-05-15 08:22:43]  lfn=log.38776104._000869.job.log.tgz.1
[2024-05-15 08:22:43]  mtime=0
[2024-05-15 08:22:43]  protocol_id=None
[2024-05-15 08:22:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-15 08:22:43]  replicas=None
[2024-05-15 08:22:43]  scope=mc23_13p6TeV
[2024-05-15 08:22:43]  status=None
[2024-05-15 08:22:43]  status_code=0
[2024-05-15 08:22:43]  storage_token=
[2024-05-15 08:22:43]  surl=/home/boinc/slots/0/PanDA_Pilot-6206085265/log.38776104._000869.job.log.tgz.1
[2024-05-15 08:22:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/18/9f/log.38776104._000869.job.log.tgz.1
[2024-05-15 08:22:43]  workdir=None
[2024-05-15 08:22:43] ]
[2024-05-15 08:22:43] 2024-05-15 15:22:09,897 | INFO     | transferring file log.38776104._000869.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6206085265/log.38776104._000869.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-15 08:22:43] 2024-05-15 15:22:09,897 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6206085265/log.38776104._000869.job.log.tgz.1 /home/boinc/slots/0/log.38776104._000869.job.log.t
[2024-05-15 08:22:43] 2024-05-15 15:22:09,919 | INFO     | adding to output.list: log.38776104._000869.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/18/9f/log.38776104._000869.job.log.tg
[2024-05-15 08:22:43] 2024-05-15 15:22:09,919 | INFO     | summary of transferred files:
[2024-05-15 08:22:43] 2024-05-15 15:22:09,919 | INFO     |  -- lfn=log.38776104._000869.job.log.tgz.1, status_code=0, status=transferred
[2024-05-15 08:22:43] 2024-05-15 15:22:09,919 | INFO     | stage-out finished correctly
[2024-05-15 08:22:43] 2024-05-15 15:22:09,950 | INFO     | monitor loop #331: job 0:6206085265 is in state 'finished'
[2024-05-15 08:22:43] 2024-05-15 15:22:09,960 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 08:22:43] 2024-05-15 15:22:12,351 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-15 08:22:43] 2024-05-15 15:22:12,474 | INFO     | monitor loop #332: job 0:6206085265 is in state 'finished'
[2024-05-15 08:22:43] 2024-05-15 15:22:12,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 08:22:43] 2024-05-15 15:22:12,906 | INFO     | job 6206085265 has state=finished
[2024-05-15 08:22:43] 2024-05-15 15:22:12,906 | INFO     | preparing for final server update for job 6206085265 in state='finished'
[2024-05-15 08:22:43] 2024-05-15 15:22:12,907 | INFO     | this job has now completed (state=finished)
[2024-05-15 08:22:43] 2024-05-15 15:22:12,907 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-15 08:22:43] 2024-05-15 15:22:12,907 | INFO     | job 6206085265 has finished - writing final server update
[2024-05-15 08:22:43] 2024-05-15 15:22:12,907 | INFO     | total number of processed events: 400 (read)
[2024-05-15 08:22:43] 2024-05-15 15:22:12,913 | INFO     | executing command: lscpu
[2024-05-15 08:22:43] 2024-05-15 15:22:12,962 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-15 08:22:43] 2024-05-15 15:22:12,962 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-15 08:22:43] 2024-05-15 15:22:13,023 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-15 08:22:43] 2024-05-15 15:22:14,978 | INFO     | monitor loop #333: job 0:6206085265 is in state 'finished'
[2024-05-15 08:22:43] 2024-05-15 15:22:14,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 08:22:43] 2024-05-15 15:22:17,480 | INFO     | monitor loop #334: job 0:6206085265 is in state 'finished'
[2024-05-15 08:22:43] 2024-05-15 15:22:17,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 08:22:43] 2024-05-15 15:22:19,984 | INFO     | monitor loop #335: job 0:6206085265 is in state 'finished'
[2024-05-15 08:22:43] 2024-05-15 15:22:19,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 08:22:43] 2024-05-15 15:22:20,545 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-15 08:22:43] 2024-05-15 15:22:20,545 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6206085265/memory_monitor_summary.json (trf name=prmon)
[2024-05-15 08:22:43] 2024-05-15 15:22:20,546 | INFO     | extracted standard info from prmon json
[2024-05-15 08:22:43] 2024-05-15 15:22:20,546 | INFO     | extracted standard memory fields from prmon json
[2024-05-15 08:22:43] 2024-05-15 15:22:20,546 | WARNING  | GPU info not found in prmon json
[2024-05-15 08:22:43] 2024-05-15 15:22:20,546 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-15 08:22:43] 2024-05-15 15:22:20,546 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-15 08:22:43] 2024-05-15 15:22:20,548 | INFO     | fitting pss+swap vs Time
[2024-05-15 08:22:43] 2024-05-15 15:22:20,548 | INFO     | model: linear, x: [1715782467.0, 1715782528.0, 1715782589.0, 1715782650.0, 1715782711.0, 1715782772.0, 1715782833.0, 1715782894.0, 1715782955.0, 1715783016.0, 1715
[2024-05-15 08:22:43] 2024-05-15 15:22:20,548 | INFO     | sum of square deviations: 85140630.8615385
[2024-05-15 08:22:43] 2024-05-15 15:22:20,548 | INFO     | sum of deviations: 25506648866.323074
[2024-05-15 08:22:43] 2024-05-15 15:22:20,548 | INFO     | mean x: 1715784419.0461538
[2024-05-15 08:22:43] 2024-05-15 15:22:20,548 | INFO     | mean y: 2555032.892307692
[2024-05-15 08:22:43] 2024-05-15 15:22:20,548 | INFO     | -- intersect: -514016547997.83606
[2024-05-15 08:22:43] 2024-05-15 15:22:20,548 | INFO     | intersect: -514016547997.83606
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | chi2: 2.8250777903423088
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | -- intersect: -514016547997.83606
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | current memory leak: 299.58 B/s (using 65 data points, chi2=2.83)
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | ..............................
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | . Timing measurements:
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | . get job = 0 s
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | . initial setup = 2 s
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | . payload setup = 4 s
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | . stage-in = 0 s
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | . payload execution = 4366 s
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | . stage-out = 0 s
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | . log creation = 0 s
[2024-05-15 08:22:43] 2024-05-15 15:22:20,549 | INFO     | ..............................
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | 
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | job summary report
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | --------------------------------------------------
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | PanDA job id: 6206085265
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | task id: 38776104
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | errors: (none)
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | pilot state: finished 
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | transexitcode: 0
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | exeerrorcode: 0
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | exeerrordiag: 
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | exitcode: 0
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | exitmsg: OK
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | cpuconsumptiontime: 27740 s
[2024-05-15 08:22:43] 2024-05-15 15:22:20,603 | INFO     | nevents: 400
[2024-05-15 08:22:43] 2024-05-15 15:22:20,604 | INFO     | neventsw: 0
[2024-05-15 08:22:43] 2024-05-15 15:22:20,604 | INFO     | pid: 249024
[2024-05-15 08:22:43] 2024-05-15 15:22:20,604 | INFO     | pgrp: 249024
[2024-05-15 08:22:43] 2024-05-15 15:22:20,604 | INFO     | corecount: 12
[2024-05-15 08:22:43] 2024-05-15 15:22:20,604 | INFO     | event service: False
[2024-05-15 08:22:43] 2024-05-15 15:22:20,604 | INFO     | sizes: {0: 2395734, 1: 2396669, 4: 2396875, 11: 2396903, 4374: 2422864, 4376: 2431818, 4378: 2432002, 4386: 2432172}
[2024-05-15 08:22:43] 2024-05-15 15:22:20,604 | INFO     | --------------------------------------------------
[2024-05-15 08:22:43] 2024-05-15 15:22:20,604 | INFO     | 
[2024-05-15 08:22:43] 2024-05-15 15:22:20,604 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-15 08:22:43] 2024-05-15 15:22:20,621 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,622 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 08:22:43] 2024-05-15 15:22:20,623 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,623 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 08:22:43] 2024-05-15 15:22:20,623 | INFO     | job 6206085265 has completed (purged errors)
[2024-05-15 08:22:43] 2024-05-15 15:22:20,623 | INFO     | overall cleanup function is called
[2024-05-15 08:22:43] 2024-05-15 15:22:21,630 | INFO     | --- collectZombieJob: --- 10, [249024]
[2024-05-15 08:22:43] 2024-05-15 15:22:21,630 | INFO     | zombie collector waiting for pid 249024
[2024-05-15 08:22:43] 2024-05-15 15:22:21,630 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 08:22:43] 2024-05-15 15:22:22,634 | INFO     | collected zombie processes
[2024-05-15 08:22:43] 2024-05-15 15:22:22,635 | INFO     | will now attempt to kill all subprocesses of pid=249024
[2024-05-15 08:22:43] 2024-05-15 15:22:22,756 | INFO     | process IDs to be killed: [249024] (in reverse order)
[2024-05-15 08:22:43] 2024-05-15 15:22:22,864 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 08:22:43] 2024-05-15 15:22:22,865 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 08:22:43] 2024-05-15 15:22:22,871 | INFO     | did not find any defunct processes belonging to 249024
[2024-05-15 08:22:43] 2024-05-15 15:22:22,877 | INFO     | did not find any defunct processes belonging to 249024
[2024-05-15 08:22:43] 2024-05-15 15:22:22,878 | INFO     | ready for new job
[2024-05-15 08:22:43] 2024-05-15 15:22:22,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 08:22:43] 2024-05-15 15:22:22,880 | INFO     | *************************************
[2024-05-15 08:22:43] 2024-05-15 15:22:22,880 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 08:22:43] 2024-05-15 15:22:22,880 | INFO     | *************************************
[2024-05-15 08:22:43] 2024-05-15 15:22:22,880 | INFO     | 
[2024-05-15 08:22:43] 2024-05-15 15:22:22,883 | INFO     | architecture information:
[2024-05-15 08:22:43] 2024-05-15 15:22:22,884 | INFO     | executing command: cat /etc/os-release
[2024-05-15 08:22:43] 2024-05-15 15:22:22,899 | INFO     | cat /etc/os-release:
[2024-05-15 08:22:43] NAME="CentOS Linux"
[2024-05-15 08:22:43] VERSION="7 (Core)"
[2024-05-15 08:22:43] ID="centos"
[2024-05-15 08:22:43] ID_LIKE="rhel fedora"
[2024-05-15 08:22:43] VERSION_ID="7"
[2024-05-15 08:22:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 08:22:43] ANSI_COLOR="0;31"
[2024-05-15 08:22:43] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 08:22:43] HOME_URL="https://www.centos.org/"
[2024-05-15 08:22:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 08:22:43] 
[2024-05-15 08:22:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 08:22:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 08:22:43] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 08:22:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 08:22:43] 
[2024-05-15 08:22:43] 2024-05-15 15:22:22,900 | INFO     | *************************************
[2024-05-15 08:22:43] 2024-05-15 15:22:23,403 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-15 08:22:43] 2024-05-15 15:22:23,421 | INFO     | sufficient remaining disk space (1852337815552 B)
[2024-05-15 08:22:43] 2024-05-15 15:22:23,422 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 08:22:43] 2024-05-15 15:22:23,422 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 08:22:43] 2024-05-15 15:22:23,422 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 08:22:43] 2024-05-15 15:22:23,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 08:22:43] 2024-05-15 15:22:23,470 | INFO     | all job control threads have been joined
[2024-05-15 08:22:43] 2024-05-15 15:22:23,492 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 08:22:43] 2024-05-15 15:22:23,492 | INFO     | aborting loop
[2024-05-15 08:22:43] 2024-05-15 15:22:23,514 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 08:22:43] 2024-05-15 15:22:23,514 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 08:22:43] 2024-05-15 15:22:23,514 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 08:22:43] 2024-05-15 15:22:23,865 | INFO     | all data control threads have been joined
[2024-05-15 08:22:43] 2024-05-15 15:22:23,866 | INFO     | all payload control threads have been joined
[2024-05-15 08:22:43] 2024-05-15 15:22:24,427 | INFO     | [job] retrieve thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:24,475 | INFO     | [job] control thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:24,498 | INFO     | [job] job monitor thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:24,549 | INFO     | [data] copytool_in thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:24,718 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:24,807 | INFO     | [job] validate thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:24,870 | INFO     | [data] control thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:24,871 | INFO     | [payload] control thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:25,003 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:25,428 | INFO     | [data] copytool_out thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:25,612 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 08:22:43] 2024-05-15 15:22:25,715 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:25,773 | INFO     | [payload] validate_post thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:25,809 | INFO     | [payload] failed_post thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:26,617 | INFO     | [job] queue monitor thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:27,429 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:34,007 | INFO     | job.realtimelogging is not enabled
[2024-05-15 08:22:43] 2024-05-15 15:22:35,013 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 08:22:43] 2024-05-15 15:22:37,074 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140509742077760)>', '<ExcThread(monitor, started 140509537748736)>']
[2024-05-15 08:22:43] 2024-05-15 15:22:37,574 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 08:22:43] 2024-05-15 15:22:37,574 | INFO     | [monitor] control thread has ended
[2024-05-15 08:22:43] 2024-05-15 15:22:42,098 | INFO     | all workflow threads have been joined
[2024-05-15 08:22:43] 2024-05-15 15:22:42,099 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 08:22:43] 2024-05-15 15:22:42,099 | INFO     | traces error code: 0
[2024-05-15 08:22:43] 2024-05-15 15:22:42,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 08:22:43] 2024-05-15 15:22:42,252 [wrapper] ==== pilot stdout END ====
[2024-05-15 08:22:43] 2024-05-15 15:22:42,255 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 08:22:43] 2024-05-15 15:22:42,258 [wrapper] pilotpid: 242526
[2024-05-15 08:22:43] 2024-05-15 15:22:42,260 [wrapper] Pilot exit status: 0
[2024-05-15 08:22:43] 2024-05-15 15:22:42,272 [wrapper] pandaids: 6206085265
[2024-05-15 08:22:43] 2024-05-15 15:22:42,330 [wrapper] cleanup: SIGTERM to supervisor_pilot  33355 242527
[2024-05-15 08:22:43] 2024-05-15 15:22:42,333 [wrapper] Test setup, not cleaning
[2024-05-15 08:22:43] 2024-05-15 15:22:42,336 [wrapper] ==== wrapper stdout END ====
[2024-05-15 08:22:43] 2024-05-15 15:22:42,338 [wrapper] ==== wrapper stderr END ====
[2024-05-15 08:22:43] 2024-05-15 15:22:42,343 [wrapper] apfmon messages muted
[2024-05-15 08:22:43]  *** Error codes and diagnostics ***
[2024-05-15 08:22:43]     "exeErrorCode": 0,
[2024-05-15 08:22:43]     "exeErrorDiag": "",
[2024-05-15 08:22:43]     "pilotErrorCode": 0,
[2024-05-15 08:22:43]     "pilotErrorDiag": "",
[2024-05-15 08:22:43]  *** Listing of results directory ***
[2024-05-15 08:22:43] total 816324
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc    467845 May 14 03:09 pilot3.tar.gz
[2024-05-15 08:22:43] -rwx------ 1 boinc boinc     32251 May 14 03:30 runpilot2-wrapper.sh
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc      5633 May 14 03:30 queuedata.json
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc       100 May 15 07:08 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 08:22:43] -rwxr-xr-x 1 boinc boinc      7986 May 15 07:08 run_atlas
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc       105 May 15 07:08 job.xml
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc      6626 May 15 07:08 init_data.xml
[2024-05-15 08:22:43] -rw-r--r-- 2 boinc boinc 597495707 May 15 07:08 EVNT.38776100._000035.pool.root.1
[2024-05-15 08:22:43] -rw-r--r-- 2 boinc boinc     17537 May 15 07:08 start_atlas.sh
[2024-05-15 08:22:43] drwxrwx--x 2 boinc boinc      4096 May 15 07:08 shared
[2024-05-15 08:22:43] -rw-r--r-- 2 boinc boinc    480003 May 15 07:08 input.tar.gz
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc         0 May 15 07:08 boinc_lockfile
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc      2638 May 15 07:08 pandaJob.out
[2024-05-15 08:22:43] -rw------- 1 boinc boinc       424 May 15 07:08 setup.sh.local
[2024-05-15 08:22:43] -rw------- 1 boinc boinc   1010550 May 15 07:08 agis_schedconf.cvmfs.json
[2024-05-15 08:22:43] -rw------- 1 boinc boinc         0 May 15 07:08 agis_ddmendpoints.agis.ALL.json
[2024-05-15 08:22:43] -rw------- 1 boinc boinc   1325758 May 15 07:08 cric_ddmendpoints.json
[2024-05-15 08:22:43] drwx------ 4 boinc boinc      4096 May 15 07:09 pilot3
[2024-05-15 08:22:43] -rw------- 1 boinc boinc 233308613 May 15 08:21 HITS.38776104._000869.pool.root.1
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc       530 May 15 08:21 boinc_task_state.xml
[2024-05-15 08:22:43] -rw------- 1 boinc boinc      1059 May 15 08:22 memory_monitor_summary.json
[2024-05-15 08:22:43] -rw------- 1 boinc boinc    369107 May 15 08:22 log.38776104._000869.job.log.tgz.1
[2024-05-15 08:22:43] -rw------- 1 boinc boinc      7779 May 15 08:22 heartbeat.json
[2024-05-15 08:22:43] -rw------- 1 boinc boinc        95 May 15 08:22 pilot_heartbeat.json
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc        27 May 15 08:22 wrapper_checkpoint.txt
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc      8192 May 15 08:22 boinc_mmap_file
[2024-05-15 08:22:43] -rw------- 1 boinc boinc      4282 May 15 08:22 pilotlog.txt
[2024-05-15 08:22:43] -rw------- 1 boinc boinc    425609 May 15 08:22 log.38776104._000869.job.log.1
[2024-05-15 08:22:43] -rw------- 1 boinc boinc       357 May 15 08:22 output.list
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc       620 May 15 08:22 runtime_log
[2024-05-15 08:22:43] -rw------- 1 boinc boinc    808960 May 15 08:22 result.tar.gz
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc     11286 May 15 08:22 runtime_log.err
[2024-05-15 08:22:43] -rw------- 1 boinc boinc       654 May 15 08:22 OeBLDmOb4Q5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmaDIKDmlip1Pm.diag
[2024-05-15 08:22:43] -rw-r--r-- 1 boinc boinc     21929 May 15 08:22 stderr.txt
[2024-05-15 08:22:43] HITS file was successfully produced:
[2024-05-15 08:22:43] -rw------- 1 boinc boinc 233308613 May 15 08:21 shared/HITS.pool.root.1
[2024-05-15 08:22:43]  *** Contents of shared directory: ***
[2024-05-15 08:22:43] total 812628
[2024-05-15 08:22:43] -rw-r--r-- 2 boinc boinc 597495707 May 15 07:08 ATLAS.root_0
[2024-05-15 08:22:43] -rw-r--r-- 2 boinc boinc     17537 May 15 07:08 start_atlas.sh
[2024-05-15 08:22:43] -rw-r--r-- 2 boinc boinc    480003 May 15 07:08 input.tar.gz
[2024-05-15 08:22:43] -rw------- 1 boinc boinc 233308613 May 15 08:21 HITS.pool.root.1
[2024-05-15 08:22:43] -rw------- 1 boinc boinc    808960 May 15 08:22 result.tar.gz
08:22:44 (238385): run_atlas exited; CPU time 27613.741066
08:22:44 (238385): called boinc_finish(0)

</stderr_txt>
]]>

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