Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:49:23 (1884384): wrapper (7.7.26015): starting
05:49:23 (1884384): wrapper: running run_atlas (--nthreads 4)
[2024-05-16 05:49:23] Arguments: --nthreads 4
[2024-05-16 05:49:23] Threads: 4
[2024-05-16 05:49:23] Checking for CVMFS
[2024-05-16 05:49:23] No cvmfs_config command found, will try listing directly
[2024-05-16 05:49:23] CVMFS is ok
[2024-05-16 05:49:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-16 05:49:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-16 05:49:23] Further information can be found at the LHC@home message board.
[2024-05-16 05:49:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-16 05:49:23] Checking for apptainer binary...
[2024-05-16 05:49:23] which: no apptainer in ((null))
[2024-05-16 05:49:23] apptainer is not installed, using version from CVMFS
[2024-05-16 05:49:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-16 05:49:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2024-05-16 05:49:24] apptainer works
[2024-05-16 05:49:24] Set ATHENA_PROC_NUMBER=4
[2024-05-16 05:49:24] Set ATHENA_CORE_NUMBER=4
[2024-05-16 05:49:24] Starting ATLAS job with PandaID=6206069607
[2024-05-16 05:49:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 14:08:00]  *** The last 200 lines of the pilot log: ***
[2024-05-16 14:08:00] 2024-05-16 12:07:36,629 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-16 14:08:00] 2024-05-16 12:07:36,629 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-16 14:08:00] 2024-05-16 12:07:36,637 | INFO     | fitting pss+swap vs Time
[2024-05-16 14:08:00] 2024-05-16 12:07:36,638 | INFO     | model: linear, x: [1715831454.0, 1715831515.0, 1715831576.0, 1715831637.0, 1715831698.0, 1715831759.0, 1715831820.0, 1715831881.0, 1715831942.0, 1715832003.0, 1715
[2024-05-16 14:08:00] 2024-05-16 12:07:36,638 | INFO     | sum of square deviations: 36257944940.0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,643 | INFO     | sum of deviations: 252246462692.99988
[2024-05-16 14:08:00] 2024-05-16 12:07:36,643 | INFO     | mean x: 1715846338.0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,643 | INFO     | mean y: 2343890.1574642127
[2024-05-16 14:08:00] 2024-05-16 12:07:36,643 | INFO     | -- intersect: -11934796231.861746
[2024-05-16 14:08:00] 2024-05-16 12:07:36,643 | INFO     | intersect: -11934796231.861746
[2024-05-16 14:08:00] 2024-05-16 12:07:36,644 | INFO     | chi2: 4.958759139311862
[2024-05-16 14:08:00] 2024-05-16 12:07:36,644 | INFO     | model: linear, x: [1715831454.0, 1715831515.0, 1715831576.0, 1715831637.0, 1715831698.0, 1715831759.0, 1715831820.0, 1715831881.0, 1715831942.0, 1715832003.0, 1715
[2024-05-16 14:08:00] 2024-05-16 12:07:36,645 | INFO     | sum of square deviations: 35157068485.0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,650 | INFO     | sum of deviations: 280884551305.50006
[2024-05-16 14:08:00] 2024-05-16 12:07:36,650 | INFO     | mean x: 1715846185.5
[2024-05-16 14:08:00] 2024-05-16 12:07:36,650 | INFO     | mean y: 2347820.708677686
[2024-05-16 14:08:00] 2024-05-16 12:07:36,650 | INFO     | -- intersect: -13706266312.720863
[2024-05-16 14:08:00] 2024-05-16 12:07:36,650 | INFO     | intersect: -13706266312.720863
[2024-05-16 14:08:00] 2024-05-16 12:07:36,651 | INFO     | chi2: 4.153958522619946
[2024-05-16 14:08:00] 2024-05-16 12:07:36,651 | INFO     | current chi2=4.153958522619946 (change=16.229879171013746 %)
[2024-05-16 14:08:00] 2024-05-16 12:07:36,651 | INFO     | right removable region: 483
[2024-05-16 14:08:00] 2024-05-16 12:07:36,651 | INFO     | model: linear, x: [1715831759.0, 1715831820.0, 1715831881.0, 1715831942.0, 1715832003.0, 1715832064.0, 1715832125.0, 1715832186.0, 1715832247.0, 1715832308.0, 1715
[2024-05-16 14:08:00] 2024-05-16 12:07:36,652 | INFO     | sum of square deviations: 35157068485.0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,657 | INFO     | sum of deviations: 132603675750.00005
[2024-05-16 14:08:00] 2024-05-16 12:07:36,657 | INFO     | mean x: 1715846490.5
[2024-05-16 14:08:00] 2024-05-16 12:07:36,657 | INFO     | mean y: 2360444.0950413225
[2024-05-16 14:08:00] 2024-05-16 12:07:36,657 | INFO     | -- intersect: -6469383687.817257
[2024-05-16 14:08:00] 2024-05-16 12:07:36,657 | INFO     | intersect: -6469383687.817257
[2024-05-16 14:08:00] 2024-05-16 12:07:36,658 | INFO     | chi2: 2.4240150190177903
[2024-05-16 14:08:00] 2024-05-16 12:07:36,658 | INFO     | current chi2=2.4240150190177903 (change=51.116500097760834 %)
[2024-05-16 14:08:00] 2024-05-16 12:07:36,658 | INFO     | model: linear, x: [1715832064.0, 1715832125.0, 1715832186.0, 1715832247.0, 1715832308.0, 1715832369.0, 1715832430.0, 1715832491.0, 1715832552.0, 1715832613.0, 1715
[2024-05-16 14:08:00] 2024-05-16 12:07:36,658 | INFO     | sum of square deviations: 34078704080.0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,663 | INFO     | sum of deviations: 36999498394.0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,663 | INFO     | mean x: 1715846643.0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,663 | INFO     | mean y: 2373964.208768267
[2024-05-16 14:08:00] 2024-05-16 12:07:36,664 | INFO     | -- intersect: -1860533291.9766843
[2024-05-16 14:08:00] 2024-05-16 12:07:36,664 | INFO     | intersect: -1860533291.9766843
[2024-05-16 14:08:00] 2024-05-16 12:07:36,664 | INFO     | chi2: 0.9319309776337208
[2024-05-16 14:08:00] 2024-05-16 12:07:36,664 | INFO     | current chi2=0.9319309776337208 (change=61.5542407814231 %)
[2024-05-16 14:08:00] 2024-05-16 12:07:36,665 | INFO     | model: linear, x: [1715832369.0, 1715832430.0, 1715832491.0, 1715832552.0, 1715832613.0, 1715832674.0, 1715832735.0, 1715832796.0, 1715832857.0, 1715832918.0, 1715
[2024-05-16 14:08:00] 2024-05-16 12:07:36,665 | INFO     | sum of square deviations: 33022619162.5
[2024-05-16 14:08:00] 2024-05-16 12:07:36,670 | INFO     | sum of deviations: 15468963038.0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,670 | INFO     | mean x: 1715846795.5
[2024-05-16 14:08:00] 2024-05-16 12:07:36,670 | INFO     | mean y: 2377063.7130801687
[2024-05-16 14:08:00] 2024-05-16 12:07:36,670 | INFO     | -- intersect: -801386275.8284838
[2024-05-16 14:08:00] 2024-05-16 12:07:36,670 | INFO     | intersect: -801386275.8284838
[2024-05-16 14:08:00] 2024-05-16 12:07:36,671 | INFO     | chi2: 0.8356943460372458
[2024-05-16 14:08:00] 2024-05-16 12:07:36,671 | INFO     | current chi2=0.8356943460372458 (change=10.326583610390418 %)
[2024-05-16 14:08:00] 2024-05-16 12:07:36,671 | INFO     | left removable region: 30
[2024-05-16 14:08:00] 2024-05-16 12:07:36,671 | INFO     | model: linear, x: [1715833284.0, 1715833345.0, 1715833406.0, 1715833467.0, 1715833528.0, 1715833589.0, 1715833650.0, 1715833711.0, 1715833772.0, 1715833833.0, 1715
[2024-05-16 14:08:00] 2024-05-16 12:07:36,671 | INFO     | sum of square deviations: 28825106042.0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,676 | INFO     | sum of deviations: 39378605083.000015
[2024-05-16 14:08:00] 2024-05-16 12:07:36,676 | INFO     | mean x: 1715847070.0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,676 | INFO     | mean y: 2382353.545253863
[2024-05-16 14:08:00] 2024-05-16 12:07:36,676 | INFO     | -- intersect: -2341673694.4672785
[2024-05-16 14:08:00] 2024-05-16 12:07:36,676 | INFO     | intersect: -2341673694.4672785
[2024-05-16 14:08:00] 2024-05-16 12:07:36,677 | INFO     | chi2: 0.005118784303991874
[2024-05-16 14:08:00] 2024-05-16 12:07:36,677 | INFO     | -- intersect: -2341673694.4672785
[2024-05-16 14:08:00] 2024-05-16 12:07:36,677 | INFO     | current memory leak: 1.37 B/s (using 453 data points, chi2=0.01)
[2024-05-16 14:08:00] 2024-05-16 12:07:36,678 | INFO     | ..............................
[2024-05-16 14:08:00] 2024-05-16 12:07:36,678 | INFO     | . Timing measurements:
[2024-05-16 14:08:00] 2024-05-16 12:07:36,678 | INFO     | . get job = 0 s
[2024-05-16 14:08:00] 2024-05-16 12:07:36,678 | INFO     | . initial setup = 1 s
[2024-05-16 14:08:00] 2024-05-16 12:07:36,678 | INFO     | . payload setup = 15 s
[2024-05-16 14:08:00] 2024-05-16 12:07:36,678 | INFO     | . stage-in = 0 s
[2024-05-16 14:08:00] 2024-05-16 12:07:36,678 | INFO     | . payload execution = 29800 s
[2024-05-16 14:08:00] 2024-05-16 12:07:36,679 | INFO     | . stage-out = 1 s
[2024-05-16 14:08:00] 2024-05-16 12:07:36,679 | INFO     | . log creation = 0 s
[2024-05-16 14:08:00] 2024-05-16 12:07:36,679 | INFO     | ..............................
[2024-05-16 14:08:00] 2024-05-16 12:07:36,772 | INFO     | 
[2024-05-16 14:08:00] 2024-05-16 12:07:36,773 | INFO     | job summary report
[2024-05-16 14:08:00] 2024-05-16 12:07:36,773 | INFO     | --------------------------------------------------
[2024-05-16 14:08:00] 2024-05-16 12:07:36,773 | INFO     | PanDA job id: 6206069607
[2024-05-16 14:08:00] 2024-05-16 12:07:36,773 | INFO     | task id: 38920995
[2024-05-16 14:08:00] 2024-05-16 12:07:36,773 | INFO     | errors: (none)
[2024-05-16 14:08:00] 2024-05-16 12:07:36,773 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 14:08:00] 2024-05-16 12:07:36,773 | INFO     | pilot state: finished 
[2024-05-16 14:08:00] 2024-05-16 12:07:36,773 | INFO     | transexitcode: 0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,773 | INFO     | exeerrorcode: 0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,773 | INFO     | exeerrordiag: 
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | exitcode: 0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | exitmsg: OK
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | cpuconsumptiontime: 113684 s
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | nevents: 400
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | neventsw: 0
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | pid: 1914535
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | pgrp: 1914535
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | corecount: 4
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | event service: False
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | sizes: {0: 2390655, 1: 2392202, 12: 2392202, 14: 2392436, 23: 2392464, 29819: 2430004, 29820: 2430131, 29821: 2439169, 29823: 2439225, 29831: 2439395}
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | --------------------------------------------------
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | 
[2024-05-16 14:08:00] 2024-05-16 12:07:36,774 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/2
[2024-05-16 14:08:00] 2024-05-16 12:07:36,800 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,800 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,800 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,800 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,800 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,800 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,800 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,801 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 14:08:00] 2024-05-16 12:07:36,802 | INFO     | job 6206069607 has completed (purged errors)
[2024-05-16 14:08:00] 2024-05-16 12:07:36,802 | INFO     | overall cleanup function is called
[2024-05-16 14:08:00] 2024-05-16 12:07:37,810 | INFO     | --- collectZombieJob: --- 10, [1914535]
[2024-05-16 14:08:00] 2024-05-16 12:07:37,810 | INFO     | zombie collector waiting for pid 1914535
[2024-05-16 14:08:00] 2024-05-16 12:07:37,810 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 14:08:00] 2024-05-16 12:07:38,815 | INFO     | collected zombie processes
[2024-05-16 14:08:00] 2024-05-16 12:07:38,816 | INFO     | will now attempt to kill all subprocesses of pid=1914535
[2024-05-16 14:08:00] 2024-05-16 12:07:39,114 | INFO     | process IDs to be killed: [1914535] (in reverse order)
[2024-05-16 14:08:00] 2024-05-16 12:07:39,429 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 14:08:00] 2024-05-16 12:07:39,429 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 14:08:00] 2024-05-16 12:07:39,447 | INFO     | did not find any defunct processes belonging to 1914535
[2024-05-16 14:08:00] 2024-05-16 12:07:39,459 | INFO     | did not find any defunct processes belonging to 1914535
[2024-05-16 14:08:00] 2024-05-16 12:07:39,459 | INFO     | ready for new job
[2024-05-16 14:08:00] 2024-05-16 12:07:39,459 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 14:08:00] 2024-05-16 12:07:39,462 | INFO     | *************************************
[2024-05-16 14:08:00] 2024-05-16 12:07:39,462 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 14:08:00] 2024-05-16 12:07:39,462 | INFO     | *************************************
[2024-05-16 14:08:00] 2024-05-16 12:07:39,462 | INFO     | 
[2024-05-16 14:08:00] 2024-05-16 12:07:39,467 | INFO     | architecture information:
[2024-05-16 14:08:00] 2024-05-16 12:07:39,467 | INFO     | executing command: cat /etc/os-release
[2024-05-16 14:08:00] 2024-05-16 12:07:39,482 | INFO     | cat /etc/os-release:
[2024-05-16 14:08:00] NAME="CentOS Linux"
[2024-05-16 14:08:00] VERSION="7 (Core)"
[2024-05-16 14:08:00] ID="centos"
[2024-05-16 14:08:00] ID_LIKE="rhel fedora"
[2024-05-16 14:08:00] VERSION_ID="7"
[2024-05-16 14:08:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 14:08:00] ANSI_COLOR="0;31"
[2024-05-16 14:08:00] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 14:08:00] HOME_URL="https://www.centos.org/"
[2024-05-16 14:08:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 14:08:00] 
[2024-05-16 14:08:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 14:08:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 14:08:00] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 14:08:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 14:08:00] 
[2024-05-16 14:08:00] 2024-05-16 12:07:39,482 | INFO     | *************************************
[2024-05-16 14:08:00] 2024-05-16 12:07:39,985 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/2
[2024-05-16 14:08:00] 2024-05-16 12:07:40,004 | INFO     | sufficient remaining disk space (3139732242432 B)
[2024-05-16 14:08:00] 2024-05-16 12:07:40,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 14:08:00] 2024-05-16 12:07:40,004 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 14:08:00] 2024-05-16 12:07:40,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 14:08:00] 2024-05-16 12:07:40,331 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 14:08:00] 2024-05-16 12:07:40,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 14:08:00] 2024-05-16 12:07:40,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 14:08:00] 2024-05-16 12:07:40,381 | INFO     | all data control threads have been joined
[2024-05-16 14:08:00] 2024-05-16 12:07:40,485 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 14:08:00] 2024-05-16 12:07:40,526 | INFO     | all job control threads have been joined
[2024-05-16 14:08:00] 2024-05-16 12:07:40,555 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 14:08:00] 2024-05-16 12:07:40,555 | INFO     | aborting loop
[2024-05-16 14:08:00] 2024-05-16 12:07:41,013 | INFO     | [job] retrieve thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:41,182 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:41,272 | INFO     | all payload control threads have been joined
[2024-05-16 14:08:00] 2024-05-16 12:07:41,389 | INFO     | [data] control thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:41,404 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:41,457 | INFO     | [payload] validate_post thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:41,498 | INFO     | [payload] failed_post thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:41,531 | INFO     | [job] control thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:41,561 | INFO     | [job] job monitor thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:41,784 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 14:08:00] 2024-05-16 12:07:41,859 | INFO     | [data] copytool_in thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:42,246 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:42,278 | INFO     | [payload] control thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:42,286 | INFO     | [job] validate thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:42,491 | INFO     | [data] copytool_out thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:42,789 | INFO     | [job] queue monitor thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:44,014 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:50,281 | INFO     | job.realtimelogging is not enabled
[2024-05-16 14:08:00] 2024-05-16 12:07:51,287 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 14:08:00] 2024-05-16 12:07:53,296 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47444312355904)>', '<ExcThread(monitor, started 47444489910016)>']
[2024-05-16 14:08:00] 2024-05-16 12:07:53,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 14:08:00] 2024-05-16 12:07:53,409 | INFO     | [monitor] control thread has ended
[2024-05-16 14:08:00] 2024-05-16 12:07:58,316 | INFO     | all workflow threads have been joined
[2024-05-16 14:08:00] 2024-05-16 12:07:58,317 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 14:08:00] 2024-05-16 12:07:58,317 | INFO     | traces error code: 0
[2024-05-16 14:08:00] 2024-05-16 12:07:58,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 14:08:00] 2024-05-16 12:07:58,450 [wrapper] ==== pilot stdout END ====
[2024-05-16 14:08:00] 2024-05-16 12:07:58,453 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 14:08:00] 2024-05-16 12:07:58,473 [wrapper] pilotpid: 1891831
[2024-05-16 14:08:00] 2024-05-16 12:07:58,491 [wrapper] Pilot exit status: 0
[2024-05-16 14:08:00] 2024-05-16 12:07:58,575 [wrapper] pandaids: 6206069607
[2024-05-16 14:08:00] 2024-05-16 12:07:58,776 [wrapper] cleanup: SIGTERM to supervisor_pilot  113842 1891832
[2024-05-16 14:08:00] 2024-05-16 12:07:58,784 [wrapper] Test setup, not cleaning
[2024-05-16 14:08:00] 2024-05-16 12:07:58,787 [wrapper] ==== wrapper stdout END ====
[2024-05-16 14:08:00] 2024-05-16 12:07:58,789 [wrapper] ==== wrapper stderr END ====
[2024-05-16 14:08:00] 2024-05-16 12:07:58,795 [wrapper] apfmon messages muted
[2024-05-16 14:08:00]  *** Error codes and diagnostics ***
[2024-05-16 14:08:00]     "exeErrorCode": 0,
[2024-05-16 14:08:00]     "exeErrorDiag": "",
[2024-05-16 14:08:00]     "pilotErrorCode": 0,
[2024-05-16 14:08:00]     "pilotErrorDiag": "",
[2024-05-16 14:08:00]  *** Listing of results directory ***
[2024-05-16 14:08:00] total 970716
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc    467845 May 14 10:32 pilot3.tar.gz
[2024-05-16 14:08:00] -rwx------ 1 boinc boinc     32251 May 14 10:52 runpilot2-wrapper.sh
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc      5633 May 14 10:52 queuedata.json
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc       100 May 16 05:49 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 14:08:00] -rwxr-xr-x 1 boinc boinc      7986 May 16 05:49 run_atlas
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc       105 May 16 05:49 job.xml
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc      6644 May 16 05:49 init_data.xml
[2024-05-16 14:08:00] -rw-r--r-- 2 boinc boinc 634094515 May 16 05:49 EVNT.38776180._000004.pool.root.1
[2024-05-16 14:08:00] -rw-r--r-- 2 boinc boinc     17537 May 16 05:49 start_atlas.sh
[2024-05-16 14:08:00] drwxrwx--x 2 boinc boinc      4096 May 16 05:49 shared
[2024-05-16 14:08:00] -rw-r--r-- 2 boinc boinc    479987 May 16 05:49 input.tar.gz
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc         0 May 16 05:49 boinc_lockfile
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc      2608 May 16 05:49 pandaJob.out
[2024-05-16 14:08:00] -rw------- 1 boinc boinc       424 May 16 05:49 setup.sh.local
[2024-05-16 14:08:00] -rw------- 1 boinc boinc   1011347 May 16 05:49 agis_schedconf.cvmfs.json
[2024-05-16 14:08:00] -rw------- 1 boinc boinc   1324701 May 16 05:49 cric_ddmendpoints.json
[2024-05-16 14:08:00] drwx------ 4 boinc boinc      4096 May 16 05:49 pilot3
[2024-05-16 14:08:00] -rw------- 1 boinc boinc 348261593 May 16 14:06 HITS.38920995._000097.pool.root.1
[2024-05-16 14:08:00] -rw------- 1 boinc boinc        95 May 16 14:06 pilot_heartbeat.json
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc       533 May 16 14:06 boinc_task_state.xml
[2024-05-16 14:08:00] -rw------- 1 boinc boinc      1042 May 16 14:07 memory_monitor_summary.json
[2024-05-16 14:08:00] -rw------- 1 boinc boinc         0 May 16 14:07 agis_ddmendpoints.agis.ALL.json
[2024-05-16 14:08:00] -rw------- 1 boinc boinc    532214 May 16 14:07 log.38920995._000097.job.log.tgz.1
[2024-05-16 14:08:00] -rw------- 1 boinc boinc      7721 May 16 14:07 heartbeat.json
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc      8192 May 16 14:07 boinc_mmap_file
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc        29 May 16 14:07 wrapper_checkpoint.txt
[2024-05-16 14:08:00] -rw------- 1 boinc boinc      4294 May 16 14:07 pilotlog.txt
[2024-05-16 14:08:00] -rw------- 1 boinc boinc   3530837 May 16 14:07 log.38920995._000097.job.log.1
[2024-05-16 14:08:00] -rw------- 1 boinc boinc       357 May 16 14:07 output.list
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc       620 May 16 14:07 runtime_log
[2024-05-16 14:08:00] -rw------- 1 boinc boinc   4085760 May 16 14:07 result.tar.gz
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc     11410 May 16 14:07 runtime_log.err
[2024-05-16 14:08:00] -rw------- 1 boinc boinc       661 May 16 14:07 qTFMDmc42Q5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmu7HKDmMV7e4m.diag
[2024-05-16 14:08:00] -rw-r--r-- 1 boinc boinc     21343 May 16 14:08 stderr.txt
[2024-05-16 14:08:00] HITS file was successfully produced:
[2024-05-16 14:08:00] -rw------- 1 boinc boinc 348261593 May 16 14:06 shared/HITS.pool.root.1
[2024-05-16 14:08:00]  *** Contents of shared directory: ***
[2024-05-16 14:08:00] total 963828
[2024-05-16 14:08:00] -rw-r--r-- 2 boinc boinc 634094515 May 16 05:49 ATLAS.root_0
[2024-05-16 14:08:00] -rw-r--r-- 2 boinc boinc     17537 May 16 05:49 start_atlas.sh
[2024-05-16 14:08:00] -rw-r--r-- 2 boinc boinc    479987 May 16 05:49 input.tar.gz
[2024-05-16 14:08:00] -rw------- 1 boinc boinc 348261593 May 16 14:06 HITS.pool.root.1
[2024-05-16 14:08:00] -rw------- 1 boinc boinc   4085760 May 16 14:07 result.tar.gz
14:08:01 (1884384): run_atlas exited; CPU time 113068.521486
14:08:01 (1884384): called boinc_finish(0)

</stderr_txt>
]]>

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