Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
00:46:21 (45447): wrapper (7.7.26015): starting
00:46:21 (45447): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 00:46:21] Arguments: --nthreads 12
[2024-05-17 00:46:21] Threads: 12
[2024-05-17 00:46:21] Checking for CVMFS
[2024-05-17 00:46:22] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 00:46:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 00:46:22] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 00:46:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 00:46:22] 2.10.1.0 17548 183199 146248 132831 0 60 27344008 45568001 3829 130560 0 594926189 99.770 374365171 3370 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-17 00:46:22] CVMFS is ok
[2024-05-17 00:46:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 00:46:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 00:46:22] Further information can be found at the LHC@home message board.
[2024-05-17 00:46:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 00:46:22] Checking for apptainer binary...
[2024-05-17 00:46:22] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 00:46:22] Running /usr/bin/apptainer --version
[2024-05-17 00:46:22] apptainer version 1.1.8-1.el7
[2024-05-17 00:46:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 00:46:23] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0050.triumf.lcg
[2024-05-17 00:46:23] apptainer works
[2024-05-17 00:46:23] Set ATHENA_PROC_NUMBER=12
[2024-05-17 00:46:23] Set ATHENA_CORE_NUMBER=12
[2024-05-17 00:46:23] Starting ATLAS job with PandaID=6206017885
[2024-05-17 00:46:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 01:48:02]  *** The last 200 lines of the pilot log: ***
[2024-05-17 01:48:02]  filesize=357425
[2024-05-17 01:48:02]  filetype=log
[2024-05-17 01:48:02]  guid=4c22dd11-02e3-4bb6-9f0d-104b928f765c
[2024-05-17 01:48:02]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 01:48:02]  is_tar=False
[2024-05-17 01:48:02]  lfn=log.38776125._009068.job.log.tgz.1
[2024-05-17 01:48:02]  mtime=0
[2024-05-17 01:48:02]  protocol_id=None
[2024-05-17 01:48:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 01:48:02]  replicas=None
[2024-05-17 01:48:02]  scope=mc23_13p6TeV
[2024-05-17 01:48:02]  status=None
[2024-05-17 01:48:02]  status_code=0
[2024-05-17 01:48:02]  storage_token=
[2024-05-17 01:48:02]  surl=/home/boinc/slots/0/PanDA_Pilot-6206017885/log.38776125._009068.job.log.tgz.1
[2024-05-17 01:48:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/81/log.38776125._009068.job.log.tgz.1
[2024-05-17 01:48:02]  workdir=None
[2024-05-17 01:48:02] ]
[2024-05-17 01:48:02] 2024-05-17 08:47:41,549 | INFO     | transferring file log.38776125._009068.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6206017885/log.38776125._009068.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 01:48:02] 2024-05-17 08:47:41,549 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6206017885/log.38776125._009068.job.log.tgz.1 /home/boinc/slots/0/log.38776125._009068.job.log.t
[2024-05-17 01:48:02] 2024-05-17 08:47:41,574 | INFO     | adding to output.list: log.38776125._009068.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/81/log.38776125._009068.job.log.tg
[2024-05-17 01:48:02] 2024-05-17 08:47:41,575 | INFO     | summary of transferred files:
[2024-05-17 01:48:02] 2024-05-17 08:47:41,575 | INFO     |  -- lfn=log.38776125._009068.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 01:48:02] 2024-05-17 08:47:41,576 | INFO     | stage-out finished correctly
[2024-05-17 01:48:02] 2024-05-17 08:47:41,662 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 01:48:02] 2024-05-17 08:47:44,026 | INFO     | monitor loop #293: job 0:6206017885 is in state 'finished'
[2024-05-17 01:48:02] 2024-05-17 08:47:44,026 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 01:48:02] 2024-05-17 08:47:44,649 | INFO     | job 6206017885 has state=finished
[2024-05-17 01:48:02] 2024-05-17 08:47:44,649 | INFO     | preparing for final server update for job 6206017885 in state='finished'
[2024-05-17 01:48:02] 2024-05-17 08:47:44,650 | INFO     | this job has now completed (state=finished)
[2024-05-17 01:48:02] 2024-05-17 08:47:44,650 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 01:48:02] 2024-05-17 08:47:44,650 | INFO     | job 6206017885 has finished - writing final server update
[2024-05-17 01:48:02] 2024-05-17 08:47:44,651 | INFO     | total number of processed events: 400 (read)
[2024-05-17 01:48:02] 2024-05-17 08:47:44,657 | INFO     | executing command: lscpu
[2024-05-17 01:48:02] 2024-05-17 08:47:44,726 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 01:48:02] 2024-05-17 08:47:44,726 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 01:48:02] 2024-05-17 08:47:44,771 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 01:48:02] 2024-05-17 08:47:46,529 | INFO     | monitor loop #294: job 0:6206017885 is in state 'finished'
[2024-05-17 01:48:02] 2024-05-17 08:47:46,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 01:48:02] 2024-05-17 08:47:48,240 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 01:48:02] 2024-05-17 08:47:48,240 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6206017885/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 01:48:02] 2024-05-17 08:47:48,242 | INFO     | extracted standard info from prmon json
[2024-05-17 01:48:02] 2024-05-17 08:47:48,242 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 01:48:02] 2024-05-17 08:47:48,242 | WARNING  | GPU info not found in prmon json
[2024-05-17 01:48:02] 2024-05-17 08:47:48,243 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 01:48:02] 2024-05-17 08:47:48,243 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 01:48:02] 2024-05-17 08:47:48,245 | INFO     | fitting pss+swap vs Time
[2024-05-17 01:48:02] 2024-05-17 08:47:48,245 | INFO     | model: linear, x: [1715932321.0, 1715932382.0, 1715932443.0, 1715932504.0, 1715932565.0, 1715932626.0, 1715932687.0, 1715932748.0, 1715932809.0, 1715932870.0, 1715
[2024-05-17 01:48:02] 2024-05-17 08:47:48,246 | INFO     | sum of square deviations: 46147842.0
[2024-05-17 01:48:02] 2024-05-17 08:47:48,246 | INFO     | sum of deviations: 19872385714.999996
[2024-05-17 01:48:02] 2024-05-17 08:47:48,246 | INFO     | mean x: 1715933907.0
[2024-05-17 01:48:02] 2024-05-17 08:47:48,246 | INFO     | mean y: 2764675.5283018867
[2024-05-17 01:48:02] 2024-05-17 08:47:48,246 | INFO     | -- intersect: -738920205142.8855
[2024-05-17 01:48:02] 2024-05-17 08:47:48,246 | INFO     | intersect: -738920205142.8855
[2024-05-17 01:48:02] 2024-05-17 08:47:48,247 | INFO     | chi2: 1.9816710356717768
[2024-05-17 01:48:02] 2024-05-17 08:47:48,247 | INFO     | -- intersect: -738920205142.8855
[2024-05-17 01:48:02] 2024-05-17 08:47:48,247 | INFO     | current memory leak: 430.62 B/s (using 53 data points, chi2=1.98)
[2024-05-17 01:48:02] 2024-05-17 08:47:48,247 | INFO     | ..............................
[2024-05-17 01:48:02] 2024-05-17 08:47:48,248 | INFO     | . Timing measurements:
[2024-05-17 01:48:02] 2024-05-17 08:47:48,248 | INFO     | . get job = 0 s
[2024-05-17 01:48:02] 2024-05-17 08:47:48,248 | INFO     | . initial setup = 2 s
[2024-05-17 01:48:02] 2024-05-17 08:47:48,248 | INFO     | . payload setup = 4 s
[2024-05-17 01:48:02] 2024-05-17 08:47:48,248 | INFO     | . stage-in = 0 s
[2024-05-17 01:48:02] 2024-05-17 08:47:48,248 | INFO     | . payload execution = 3643 s
[2024-05-17 01:48:02] 2024-05-17 08:47:48,248 | INFO     | . stage-out = 0 s
[2024-05-17 01:48:02] 2024-05-17 08:47:48,248 | INFO     | . log creation = 0 s
[2024-05-17 01:48:02] 2024-05-17 08:47:48,248 | INFO     | ..............................
[2024-05-17 01:48:02] 2024-05-17 08:47:48,670 | INFO     | 
[2024-05-17 01:48:02] 2024-05-17 08:47:48,670 | INFO     | job summary report
[2024-05-17 01:48:02] 2024-05-17 08:47:48,670 | INFO     | --------------------------------------------------
[2024-05-17 01:48:02] 2024-05-17 08:47:48,671 | INFO     | PanDA job id: 6206017885
[2024-05-17 01:48:02] 2024-05-17 08:47:48,671 | INFO     | task id: 38776125
[2024-05-17 01:48:02] 2024-05-17 08:47:48,671 | INFO     | errors: (none)
[2024-05-17 01:48:02] 2024-05-17 08:47:48,671 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 01:48:02] 2024-05-17 08:47:48,671 | INFO     | pilot state: finished 
[2024-05-17 01:48:02] 2024-05-17 08:47:48,671 | INFO     | transexitcode: 0
[2024-05-17 01:48:02] 2024-05-17 08:47:48,671 | INFO     | exeerrorcode: 0
[2024-05-17 01:48:02] 2024-05-17 08:47:48,671 | INFO     | exeerrordiag: 
[2024-05-17 01:48:02] 2024-05-17 08:47:48,671 | INFO     | exitcode: 0
[2024-05-17 01:48:02] 2024-05-17 08:47:48,672 | INFO     | exitmsg: OK
[2024-05-17 01:48:02] 2024-05-17 08:47:48,672 | INFO     | cpuconsumptiontime: 32267 s
[2024-05-17 01:48:02] 2024-05-17 08:47:48,672 | INFO     | nevents: 400
[2024-05-17 01:48:02] 2024-05-17 08:47:48,672 | INFO     | neventsw: 0
[2024-05-17 01:48:02] 2024-05-17 08:47:48,672 | INFO     | pid: 80485
[2024-05-17 01:48:02] 2024-05-17 08:47:48,672 | INFO     | pgrp: 80485
[2024-05-17 01:48:02] 2024-05-17 08:47:48,672 | INFO     | corecount: 12
[2024-05-17 01:48:02] 2024-05-17 08:47:48,672 | INFO     | event service: False
[2024-05-17 01:48:02] 2024-05-17 08:47:48,672 | INFO     | sizes: {0: 2392190, 4: 2392396, 11: 2392424, 3652: 2418113, 3654: 2427123, 3661: 2427237}
[2024-05-17 01:48:02] 2024-05-17 08:47:48,673 | INFO     | --------------------------------------------------
[2024-05-17 01:48:02] 2024-05-17 08:47:48,673 | INFO     | 
[2024-05-17 01:48:02] 2024-05-17 08:47:48,673 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 01:48:02] 2024-05-17 08:47:48,702 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,703 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,703 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,703 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,703 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,703 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,703 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,703 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,703 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,703 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,704 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,704 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,704 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,704 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,704 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,704 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,704 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,704 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 01:48:02] 2024-05-17 08:47:48,704 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,704 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 01:48:02] 2024-05-17 08:47:48,705 | INFO     | job 6206017885 has completed (purged errors)
[2024-05-17 01:48:02] 2024-05-17 08:47:48,705 | INFO     | overall cleanup function is called
[2024-05-17 01:48:02] 2024-05-17 08:47:49,714 | INFO     | --- collectZombieJob: --- 10, [80485]
[2024-05-17 01:48:02] 2024-05-17 08:47:49,714 | INFO     | zombie collector waiting for pid 80485
[2024-05-17 01:48:02] 2024-05-17 08:47:49,714 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 01:48:02] 2024-05-17 08:47:50,720 | INFO     | collected zombie processes
[2024-05-17 01:48:02] 2024-05-17 08:47:50,720 | INFO     | will now attempt to kill all subprocesses of pid=80485
[2024-05-17 01:48:02] 2024-05-17 08:47:50,842 | INFO     | process IDs to be killed: [80485] (in reverse order)
[2024-05-17 01:48:02] 2024-05-17 08:47:50,958 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 01:48:02] 2024-05-17 08:47:50,958 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 01:48:02] 2024-05-17 08:47:50,965 | INFO     | did not find any defunct processes belonging to 80485
[2024-05-17 01:48:02] 2024-05-17 08:47:50,970 | INFO     | did not find any defunct processes belonging to 80485
[2024-05-17 01:48:02] 2024-05-17 08:47:50,971 | INFO     | ready for new job
[2024-05-17 01:48:02] 2024-05-17 08:47:50,971 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 01:48:02] 2024-05-17 08:47:50,972 | INFO     | *************************************
[2024-05-17 01:48:02] 2024-05-17 08:47:50,972 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 01:48:02] 2024-05-17 08:47:50,972 | INFO     | *************************************
[2024-05-17 01:48:02] 2024-05-17 08:47:50,972 | INFO     | 
[2024-05-17 01:48:02] 2024-05-17 08:47:50,976 | INFO     | architecture information:
[2024-05-17 01:48:02] 2024-05-17 08:47:50,976 | INFO     | executing command: cat /etc/os-release
[2024-05-17 01:48:02] 2024-05-17 08:47:50,995 | INFO     | cat /etc/os-release:
[2024-05-17 01:48:02] NAME="CentOS Linux"
[2024-05-17 01:48:02] VERSION="7 (Core)"
[2024-05-17 01:48:02] ID="centos"
[2024-05-17 01:48:02] ID_LIKE="rhel fedora"
[2024-05-17 01:48:02] VERSION_ID="7"
[2024-05-17 01:48:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 01:48:02] ANSI_COLOR="0;31"
[2024-05-17 01:48:02] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 01:48:02] HOME_URL="https://www.centos.org/"
[2024-05-17 01:48:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 01:48:02] 
[2024-05-17 01:48:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 01:48:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 01:48:02] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 01:48:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 01:48:02] 
[2024-05-17 01:48:02] 2024-05-17 08:47:50,995 | INFO     | *************************************
[2024-05-17 01:48:02] 2024-05-17 08:47:51,499 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 01:48:02] 2024-05-17 08:47:51,527 | INFO     | sufficient remaining disk space (2239761481728 B)
[2024-05-17 01:48:02] 2024-05-17 08:47:51,527 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 01:48:02] 2024-05-17 08:47:51,528 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 01:48:02] 2024-05-17 08:47:51,528 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 01:48:02] 2024-05-17 08:47:51,529 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 01:48:02] 2024-05-17 08:47:51,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 01:48:02] 2024-05-17 08:47:51,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 01:48:02] 2024-05-17 08:47:51,540 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-17 01:48:02] 2024-05-17 08:47:51,540 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-17 01:48:02] 2024-05-17 08:47:51,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 01:48:02] 2024-05-17 08:47:51,541 | INFO     | will abort loop
[2024-05-17 01:48:02] 2024-05-17 08:47:51,562 | INFO     | all payload control threads have been joined
[2024-05-17 01:48:02] 2024-05-17 08:47:51,663 | INFO     | all data control threads have been joined
[2024-05-17 01:48:02] 2024-05-17 08:47:52,176 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 01:48:02] 2024-05-17 08:47:52,263 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 01:48:02] 2024-05-17 08:47:52,534 | INFO     | [job] retrieve thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:52,546 | INFO     | [job] job monitor thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:52,567 | INFO     | [payload] control thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:52,651 | INFO     | all job control threads have been joined
[2024-05-17 01:48:02] 2024-05-17 08:47:52,668 | INFO     | [data] control thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:52,750 | INFO     | [job] validate thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:52,786 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:53,059 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:53,126 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:53,206 | INFO     | [payload] failed_post thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:53,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 01:48:02] 2024-05-17 08:47:53,656 | INFO     | [job] control thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:53,710 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:53,725 | INFO     | [payload] validate_post thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:53,938 | INFO     | [data] copytool_in thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:54,182 | INFO     | [data] copytool_out thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:54,354 | INFO     | [job] queue monitor thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:56,268 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 01:48:02] 2024-05-17 08:47:56,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140021747386176)>', '<ExcThread(monitor, started 140021453526784)>']
[2024-05-17 01:48:02] 2024-05-17 08:47:57,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 01:48:02] 2024-05-17 08:47:57,558 | INFO     | [monitor] control thread has ended
[2024-05-17 01:48:02] 2024-05-17 08:48:01,786 | INFO     | all workflow threads have been joined
[2024-05-17 01:48:02] 2024-05-17 08:48:01,786 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 01:48:02] 2024-05-17 08:48:01,787 | INFO     | traces error code: 0
[2024-05-17 01:48:02] 2024-05-17 08:48:01,787 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 01:48:02] 2024-05-17 08:48:01,873 [wrapper] ==== pilot stdout END ====
[2024-05-17 01:48:02] 2024-05-17 08:48:01,875 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 01:48:02] 2024-05-17 08:48:01,878 [wrapper] pilotpid: 55544
[2024-05-17 01:48:02] 2024-05-17 08:48:01,880 [wrapper] Pilot exit status: 0
[2024-05-17 01:48:02] 2024-05-17 08:48:01,889 [wrapper] pandaids: 6206017885
[2024-05-17 01:48:02] 2024-05-17 08:48:01,932 [wrapper] cleanup: SIGTERM to supervisor_pilot 188784 55546
[2024-05-17 01:48:02] 2024-05-17 08:48:01,935 [wrapper] Test setup, not cleaning
[2024-05-17 01:48:02] 2024-05-17 08:48:01,938 [wrapper] ==== wrapper stdout END ====
[2024-05-17 01:48:02] 2024-05-17 08:48:01,940 [wrapper] ==== wrapper stderr END ====
[2024-05-17 01:48:02] 2024-05-17 08:48:01,946 [wrapper] apfmon messages muted
[2024-05-17 01:48:02]  *** Error codes and diagnostics ***
[2024-05-17 01:48:02]     "exeErrorCode": 0,
[2024-05-17 01:48:02]     "exeErrorDiag": "",
[2024-05-17 01:48:02]     "pilotErrorCode": 0,
[2024-05-17 01:48:02]     "pilotErrorDiag": "",
[2024-05-17 01:48:02]  *** Listing of results directory ***
[2024-05-17 01:48:02] total 834656
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc    467845 May 13 21:34 pilot3.tar.gz
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc      5633 May 13 21:36 queuedata.json
[2024-05-17 01:48:02] -rwx------ 1 boinc boinc     32251 May 13 21:36 runpilot2-wrapper.sh
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc       100 May 17 00:46 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 01:48:02] -rwxr-xr-x 1 boinc boinc      7986 May 17 00:46 run_atlas
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc       105 May 17 00:46 job.xml
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc      6627 May 17 00:46 init_data.xml
[2024-05-17 01:48:02] -rw-r--r-- 2 boinc boinc 601258320 May 17 00:46 EVNT.38776119._000312.pool.root.1
[2024-05-17 01:48:02] drwxrwx--x 2 boinc boinc      4096 May 17 00:46 shared
[2024-05-17 01:48:02] -rw-r--r-- 2 boinc boinc    480006 May 17 00:46 input.tar.gz
[2024-05-17 01:48:02] -rw-r--r-- 2 boinc boinc     17537 May 17 00:46 start_atlas.sh
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc         0 May 17 00:46 boinc_lockfile
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc      2632 May 17 00:46 pandaJob.out
[2024-05-17 01:48:02] -rw------- 1 boinc boinc       424 May 17 00:46 setup.sh.local
[2024-05-17 01:48:02] -rw------- 1 boinc boinc   1019364 May 17 00:46 agis_schedconf.cvmfs.json
[2024-05-17 01:48:02] -rw------- 1 boinc boinc         0 May 17 00:46 agis_ddmendpoints.agis.ALL.json
[2024-05-17 01:48:02] -rw------- 1 boinc boinc   1324701 May 17 00:46 cric_ddmendpoints.json
[2024-05-17 01:48:02] drwx------ 4 boinc boinc      4096 May 17 00:46 pilot3
[2024-05-17 01:48:02] -rw------- 1 boinc boinc 248420914 May 17 01:47 HITS.38776125._009068.pool.root.1
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc       531 May 17 01:47 boinc_task_state.xml
[2024-05-17 01:48:02] -rw------- 1 boinc boinc      1040 May 17 01:47 memory_monitor_summary.json
[2024-05-17 01:48:02] -rw------- 1 boinc boinc        95 May 17 01:47 pilot_heartbeat.json
[2024-05-17 01:48:02] -rw------- 1 boinc boinc    357425 May 17 01:47 log.38776125._009068.job.log.tgz.1
[2024-05-17 01:48:02] -rw------- 1 boinc boinc      7758 May 17 01:47 heartbeat.json
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc        27 May 17 01:47 wrapper_checkpoint.txt
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc      8192 May 17 01:47 boinc_mmap_file
[2024-05-17 01:48:02] -rw------- 1 boinc boinc      4519 May 17 01:48 pilotlog.txt
[2024-05-17 01:48:02] -rw------- 1 boinc boinc    380048 May 17 01:48 log.38776125._009068.job.log.1
[2024-05-17 01:48:02] -rw------- 1 boinc boinc       357 May 17 01:48 output.list
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc       620 May 17 01:48 runtime_log
[2024-05-17 01:48:02] -rw------- 1 boinc boinc    757760 May 17 01:48 result.tar.gz
[2024-05-17 01:48:02] -rw------- 1 boinc boinc       653 May 17 01:48 iugKDmW5yQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDm97LKDmMEvFBo.diag
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc     11286 May 17 01:48 runtime_log.err
[2024-05-17 01:48:02] -rw-r--r-- 1 boinc boinc     21601 May 17 01:48 stderr.txt
[2024-05-17 01:48:02] HITS file was successfully produced:
[2024-05-17 01:48:02] -rw------- 1 boinc boinc 248420914 May 17 01:47 shared/HITS.pool.root.1
[2024-05-17 01:48:02]  *** Contents of shared directory: ***
[2024-05-17 01:48:02] total 831008
[2024-05-17 01:48:02] -rw-r--r-- 2 boinc boinc 601258320 May 17 00:46 ATLAS.root_0
[2024-05-17 01:48:02] -rw-r--r-- 2 boinc boinc    480006 May 17 00:46 input.tar.gz
[2024-05-17 01:48:02] -rw-r--r-- 2 boinc boinc     17537 May 17 00:46 start_atlas.sh
[2024-05-17 01:48:02] -rw------- 1 boinc boinc 248420914 May 17 01:47 HITS.pool.root.1
[2024-05-17 01:48:02] -rw------- 1 boinc boinc    757760 May 17 01:48 result.tar.gz
01:48:04 (45447): run_atlas exited; CPU time 32075.994272
01:48:04 (45447): called boinc_finish(0)

</stderr_txt>
]]>

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