Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
02:48:59 (121966): wrapper (7.7.26015): starting
02:48:59 (121966): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 02:48:59] Arguments: --nthreads 12
[2024-05-17 02:48:59] Threads: 12
[2024-05-17 02:48:59] Checking for CVMFS
[2024-05-17 02:48:59] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 02:48:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 02:48:59] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 02:49:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 02:49:00] 2.10.1.0 17548 183321 146168 132835 2 60 27431368 45568001 3829 130560 0 595103438 99.770 374404594 3370 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-17 02:49:00] CVMFS is ok
[2024-05-17 02:49:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 02:49:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 02:49:00] Further information can be found at the LHC@home message board.
[2024-05-17 02:49:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 02:49:00] Checking for apptainer binary...
[2024-05-17 02:49:00] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 02:49:00] Running /usr/bin/apptainer --version
[2024-05-17 02:49:00] apptainer version 1.1.8-1.el7
[2024-05-17 02:49:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 02:49:01] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0050.triumf.lcg
[2024-05-17 02:49:01] apptainer works
[2024-05-17 02:49:01] Set ATHENA_PROC_NUMBER=12
[2024-05-17 02:49:01] Set ATHENA_CORE_NUMBER=12
[2024-05-17 02:49:01] Starting ATLAS job with PandaID=6206017753
[2024-05-17 02:49:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 03:51:02]  *** The last 200 lines of the pilot log: ***
[2024-05-17 03:51:02]  direct_access_lan=False
[2024-05-17 03:51:02]  direct_access_wan=False
[2024-05-17 03:51:02]  domain=
[2024-05-17 03:51:02]  filesize=347124
[2024-05-17 03:51:02]  filetype=log
[2024-05-17 03:51:02]  guid=ec812120-844a-443d-9b2a-35081df001bd
[2024-05-17 03:51:02]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 03:51:02]  is_tar=False
[2024-05-17 03:51:02]  lfn=log.38776125._008936.job.log.tgz.1
[2024-05-17 03:51:02]  mtime=0
[2024-05-17 03:51:02]  protocol_id=None
[2024-05-17 03:51:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 03:51:02]  replicas=None
[2024-05-17 03:51:02]  scope=mc23_13p6TeV
[2024-05-17 03:51:02]  status=None
[2024-05-17 03:51:02]  status_code=0
[2024-05-17 03:51:02]  storage_token=
[2024-05-17 03:51:02]  surl=/home/boinc/slots/0/PanDA_Pilot-6206017753/log.38776125._008936.job.log.tgz.1
[2024-05-17 03:51:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/4b/log.38776125._008936.job.log.tgz.1
[2024-05-17 03:51:02]  workdir=None
[2024-05-17 03:51:02] ]
[2024-05-17 03:51:02] 2024-05-17 10:50:37,262 | INFO     | transferring file log.38776125._008936.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6206017753/log.38776125._008936.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 03:51:02] 2024-05-17 10:50:37,262 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6206017753/log.38776125._008936.job.log.tgz.1 /home/boinc/slots/0/log.38776125._008936.job.log.t
[2024-05-17 03:51:02] 2024-05-17 10:50:37,289 | INFO     | adding to output.list: log.38776125._008936.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/4b/log.38776125._008936.job.log.tg
[2024-05-17 03:51:02] 2024-05-17 10:50:37,290 | INFO     | summary of transferred files:
[2024-05-17 03:51:02] 2024-05-17 10:50:37,290 | INFO     |  -- lfn=log.38776125._008936.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 03:51:02] 2024-05-17 10:50:37,290 | INFO     | stage-out finished correctly
[2024-05-17 03:51:02] 2024-05-17 10:50:37,339 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 03:51:02] 2024-05-17 10:50:38,178 | INFO     | job 6206017753 has state=finished
[2024-05-17 03:51:02] 2024-05-17 10:50:38,179 | INFO     | preparing for final server update for job 6206017753 in state='finished'
[2024-05-17 03:51:02] 2024-05-17 10:50:38,179 | INFO     | this job has now completed (state=finished)
[2024-05-17 03:51:02] 2024-05-17 10:50:38,179 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 03:51:02] 2024-05-17 10:50:38,180 | INFO     | job 6206017753 has finished - writing final server update
[2024-05-17 03:51:02] 2024-05-17 10:50:38,180 | INFO     | total number of processed events: 400 (read)
[2024-05-17 03:51:02] 2024-05-17 10:50:38,186 | INFO     | executing command: lscpu
[2024-05-17 03:51:02] 2024-05-17 10:50:38,253 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 03:51:02] 2024-05-17 10:50:38,253 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 03:51:02] 2024-05-17 10:50:38,305 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 03:51:02] 2024-05-17 10:50:41,566 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 03:51:02] 2024-05-17 10:50:41,567 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6206017753/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 03:51:02] 2024-05-17 10:50:41,569 | INFO     | extracted standard info from prmon json
[2024-05-17 03:51:02] 2024-05-17 10:50:41,569 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 03:51:02] 2024-05-17 10:50:41,569 | WARNING  | GPU info not found in prmon json
[2024-05-17 03:51:02] 2024-05-17 10:50:41,569 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 03:51:02] 2024-05-17 10:50:41,570 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 03:51:02] 2024-05-17 10:50:41,572 | INFO     | fitting pss+swap vs Time
[2024-05-17 03:51:02] 2024-05-17 10:50:41,572 | INFO     | model: linear, x: [1715939679.0, 1715939740.0, 1715939801.0, 1715939862.0, 1715939923.0, 1715939984.0, 1715940045.0, 1715940106.0, 1715940167.0, 1715940228.0, 1715
[2024-05-17 03:51:02] 2024-05-17 10:50:41,572 | INFO     | sum of square deviations: 46147842.0
[2024-05-17 03:51:02] 2024-05-17 10:50:41,573 | INFO     | sum of deviations: 15611139276.0
[2024-05-17 03:51:02] 2024-05-17 10:50:41,573 | INFO     | mean x: 1715941265.0
[2024-05-17 03:51:02] 2024-05-17 10:50:41,573 | INFO     | mean y: 2530652.037735849
[2024-05-17 03:51:02] 2024-05-17 10:50:41,573 | INFO     | -- intersect: -580475275381.6793
[2024-05-17 03:51:02] 2024-05-17 10:50:41,573 | INFO     | intersect: -580475275381.6793
[2024-05-17 03:51:02] 2024-05-17 10:50:41,573 | INFO     | chi2: 1.756738386750681
[2024-05-17 03:51:02] 2024-05-17 10:50:41,573 | INFO     | -- intersect: -580475275381.6793
[2024-05-17 03:51:02] 2024-05-17 10:50:41,574 | INFO     | current memory leak: 338.29 B/s (using 53 data points, chi2=1.76)
[2024-05-17 03:51:02] 2024-05-17 10:50:41,574 | INFO     | ..............................
[2024-05-17 03:51:02] 2024-05-17 10:50:41,574 | INFO     | . Timing measurements:
[2024-05-17 03:51:02] 2024-05-17 10:50:41,574 | INFO     | . get job = 0 s
[2024-05-17 03:51:02] 2024-05-17 10:50:41,574 | INFO     | . initial setup = 1 s
[2024-05-17 03:51:02] 2024-05-17 10:50:41,575 | INFO     | . payload setup = 5 s
[2024-05-17 03:51:02] 2024-05-17 10:50:41,575 | INFO     | . stage-in = 0 s
[2024-05-17 03:51:02] 2024-05-17 10:50:41,575 | INFO     | . payload execution = 3662 s
[2024-05-17 03:51:02] 2024-05-17 10:50:41,575 | INFO     | . stage-out = 0 s
[2024-05-17 03:51:02] 2024-05-17 10:50:41,575 | INFO     | . log creation = 0 s
[2024-05-17 03:51:02] 2024-05-17 10:50:41,575 | INFO     | ..............................
[2024-05-17 03:51:02] 2024-05-17 10:50:41,663 | INFO     | 
[2024-05-17 03:51:02] 2024-05-17 10:50:41,663 | INFO     | job summary report
[2024-05-17 03:51:02] 2024-05-17 10:50:41,663 | INFO     | --------------------------------------------------
[2024-05-17 03:51:02] 2024-05-17 10:50:41,663 | INFO     | PanDA job id: 6206017753
[2024-05-17 03:51:02] 2024-05-17 10:50:41,663 | INFO     | task id: 38776125
[2024-05-17 03:51:02] 2024-05-17 10:50:41,663 | INFO     | errors: (none)
[2024-05-17 03:51:02] 2024-05-17 10:50:41,663 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 03:51:02] 2024-05-17 10:50:41,663 | INFO     | pilot state: finished 
[2024-05-17 03:51:02] 2024-05-17 10:50:41,663 | INFO     | transexitcode: 0
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | exeerrorcode: 0
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | exeerrordiag: 
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | exitcode: 0
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | exitmsg: OK
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | cpuconsumptiontime: 32460 s
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | nevents: 400
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | neventsw: 0
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | pid: 152326
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | pgrp: 152326
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | corecount: 12
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | event service: False
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | sizes: {0: 2392190, 4: 2392396, 11: 2392424, 3671: 2418114, 3672: 2427124, 3676: 2427238}
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | --------------------------------------------------
[2024-05-17 03:51:02] 2024-05-17 10:50:41,664 | INFO     | 
[2024-05-17 03:51:02] 2024-05-17 10:50:41,665 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 03:51:02] 2024-05-17 10:50:41,692 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,692 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,692 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,692 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,692 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,692 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,692 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 03:51:02] 2024-05-17 10:50:41,693 | INFO     | job 6206017753 has completed (purged errors)
[2024-05-17 03:51:02] 2024-05-17 10:50:41,694 | INFO     | overall cleanup function is called
[2024-05-17 03:51:02] 2024-05-17 10:50:42,701 | INFO     | --- collectZombieJob: --- 10, [152326]
[2024-05-17 03:51:02] 2024-05-17 10:50:42,702 | INFO     | zombie collector waiting for pid 152326
[2024-05-17 03:51:02] 2024-05-17 10:50:42,702 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 03:51:02] 2024-05-17 10:50:43,184 | WARNING  | process 152326 is no longer using CPU - aborting
[2024-05-17 03:51:02] 2024-05-17 10:50:43,184 | INFO     | aborting job monitoring since job object (job id=6206017753) has expired
[2024-05-17 03:51:02] 2024-05-17 10:50:43,707 | INFO     | collected zombie processes
[2024-05-17 03:51:02] 2024-05-17 10:50:43,707 | INFO     | will now attempt to kill all subprocesses of pid=152326
[2024-05-17 03:51:02] 2024-05-17 10:50:43,833 | INFO     | process IDs to be killed: [152326] (in reverse order)
[2024-05-17 03:51:02] 2024-05-17 10:50:43,950 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 03:51:02] 2024-05-17 10:50:43,950 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 03:51:02] 2024-05-17 10:50:43,956 | INFO     | did not find any defunct processes belonging to 152326
[2024-05-17 03:51:02] 2024-05-17 10:50:43,961 | INFO     | did not find any defunct processes belonging to 152326
[2024-05-17 03:51:02] 2024-05-17 10:50:43,961 | INFO     | ready for new job
[2024-05-17 03:51:02] 2024-05-17 10:50:43,962 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 03:51:02] 2024-05-17 10:50:43,963 | INFO     | *************************************
[2024-05-17 03:51:02] 2024-05-17 10:50:43,963 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 03:51:02] 2024-05-17 10:50:43,963 | INFO     | *************************************
[2024-05-17 03:51:02] 2024-05-17 10:50:43,963 | INFO     | 
[2024-05-17 03:51:02] 2024-05-17 10:50:43,967 | INFO     | architecture information:
[2024-05-17 03:51:02] 2024-05-17 10:50:43,967 | INFO     | executing command: cat /etc/os-release
[2024-05-17 03:51:02] 2024-05-17 10:50:43,989 | INFO     | cat /etc/os-release:
[2024-05-17 03:51:02] NAME="CentOS Linux"
[2024-05-17 03:51:02] VERSION="7 (Core)"
[2024-05-17 03:51:02] ID="centos"
[2024-05-17 03:51:02] ID_LIKE="rhel fedora"
[2024-05-17 03:51:02] VERSION_ID="7"
[2024-05-17 03:51:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 03:51:02] ANSI_COLOR="0;31"
[2024-05-17 03:51:02] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 03:51:02] HOME_URL="https://www.centos.org/"
[2024-05-17 03:51:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 03:51:02] 
[2024-05-17 03:51:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 03:51:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 03:51:02] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 03:51:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 03:51:02] 
[2024-05-17 03:51:02] 2024-05-17 10:50:43,989 | INFO     | *************************************
[2024-05-17 03:51:02] 2024-05-17 10:50:44,492 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 03:51:02] 2024-05-17 10:50:44,519 | INFO     | sufficient remaining disk space (2238756945920 B)
[2024-05-17 03:51:02] 2024-05-17 10:50:44,519 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 03:51:02] 2024-05-17 10:50:44,520 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 03:51:02] 2024-05-17 10:50:44,520 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 03:51:02] 2024-05-17 10:50:44,520 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 03:51:02] 2024-05-17 10:50:44,521 | INFO     | aborting loop
[2024-05-17 03:51:02] 2024-05-17 10:50:44,521 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 03:51:02] 2024-05-17 10:50:44,522 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 03:51:02] 2024-05-17 10:50:44,522 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 03:51:02] 2024-05-17 10:50:44,722 | INFO     | all data control threads have been joined
[2024-05-17 03:51:02] 2024-05-17 10:50:45,347 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 03:51:02] 2024-05-17 10:50:45,525 | INFO     | [job] retrieve thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:45,527 | INFO     | [job] job monitor thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:45,633 | INFO     | all payload control threads have been joined
[2024-05-17 03:51:02] 2024-05-17 10:50:45,727 | INFO     | [data] control thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:45,804 | INFO     | all job control threads have been joined
[2024-05-17 03:51:02] 2024-05-17 10:50:46,134 | INFO     | [data] copytool_in thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:46,367 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:46,534 | INFO     | [payload] failed_post thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:46,639 | INFO     | [payload] control thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:46,671 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 03:51:02] 2024-05-17 10:50:46,712 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:46,768 | INFO     | [job] validate thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:46,810 | INFO     | [job] control thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:46,929 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:47,106 | INFO     | [payload] validate_post thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:47,353 | INFO     | [data] copytool_out thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:47,677 | INFO     | [job] queue monitor thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:47,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 03:51:02] 2024-05-17 10:50:51,944 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:54,583 | INFO     | job.realtimelogging is not enabled
[2024-05-17 03:51:02] 2024-05-17 10:50:55,588 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 03:51:02] 2024-05-17 10:50:56,609 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139689414850368)>', '<ExcThread(monitor, started 139689130432256)>']
[2024-05-17 03:51:02] 2024-05-17 10:50:57,577 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 03:51:02] 2024-05-17 10:50:57,578 | INFO     | [monitor] control thread has ended
[2024-05-17 03:51:02] 2024-05-17 10:51:01,634 | INFO     | all workflow threads have been joined
[2024-05-17 03:51:02] 2024-05-17 10:51:01,635 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 03:51:02] 2024-05-17 10:51:01,635 | INFO     | traces error code: 0
[2024-05-17 03:51:02] 2024-05-17 10:51:01,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 03:51:02] 2024-05-17 10:51:01,730 [wrapper] ==== pilot stdout END ====
[2024-05-17 03:51:02] 2024-05-17 10:51:01,733 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 03:51:02] 2024-05-17 10:51:01,736 [wrapper] pilotpid: 131445
[2024-05-17 03:51:02] 2024-05-17 10:51:01,739 [wrapper] Pilot exit status: 0
[2024-05-17 03:51:02] 2024-05-17 10:51:01,750 [wrapper] pandaids: 6206017753
[2024-05-17 03:51:02] 2024-05-17 10:51:01,816 [wrapper] cleanup: SIGTERM to supervisor_pilot  16648 131446
[2024-05-17 03:51:02] 2024-05-17 10:51:01,820 [wrapper] Test setup, not cleaning
[2024-05-17 03:51:02] 2024-05-17 10:51:01,824 [wrapper] ==== wrapper stdout END ====
[2024-05-17 03:51:02] 2024-05-17 10:51:01,827 [wrapper] ==== wrapper stderr END ====
[2024-05-17 03:51:02] 2024-05-17 10:51:01,834 [wrapper] apfmon messages muted
[2024-05-17 03:51:02]  *** Error codes and diagnostics ***
[2024-05-17 03:51:02]     "exeErrorCode": 0,
[2024-05-17 03:51:02]     "exeErrorDiag": "",
[2024-05-17 03:51:02]     "pilotErrorCode": 0,
[2024-05-17 03:51:02]     "pilotErrorDiag": "",
[2024-05-17 03:51:02]  *** Listing of results directory ***
[2024-05-17 03:51:02] total 825840
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc    467845 May 13 21:03 pilot3.tar.gz
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc      5633 May 13 21:22 queuedata.json
[2024-05-17 03:51:02] -rwx------ 1 boinc boinc     32251 May 13 21:22 runpilot2-wrapper.sh
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc       100 May 17 02:48 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 03:51:02] -rwxr-xr-x 1 boinc boinc      7986 May 17 02:48 run_atlas
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc       105 May 17 02:48 job.xml
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc      6627 May 17 02:48 init_data.xml
[2024-05-17 03:51:02] -rw-r--r-- 2 boinc boinc 598273926 May 17 02:48 EVNT.38776119._000297.pool.root.1
[2024-05-17 03:51:02] drwxrwx--x 2 boinc boinc      4096 May 17 02:48 shared
[2024-05-17 03:51:02] -rw-r--r-- 2 boinc boinc    480011 May 17 02:48 input.tar.gz
[2024-05-17 03:51:02] -rw-r--r-- 2 boinc boinc     17537 May 17 02:48 start_atlas.sh
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc         0 May 17 02:48 boinc_lockfile
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc      2632 May 17 02:49 pandaJob.out
[2024-05-17 03:51:02] -rw------- 1 boinc boinc       424 May 17 02:49 setup.sh.local
[2024-05-17 03:51:02] -rw------- 1 boinc boinc   1019400 May 17 02:49 agis_schedconf.cvmfs.json
[2024-05-17 03:51:02] -rw------- 1 boinc boinc         0 May 17 02:49 agis_ddmendpoints.agis.ALL.json
[2024-05-17 03:51:02] -rw------- 1 boinc boinc   1324701 May 17 02:49 cric_ddmendpoints.json
[2024-05-17 03:51:02] drwx------ 4 boinc boinc      4096 May 17 02:49 pilot3
[2024-05-17 03:51:02] -rw------- 1 boinc boinc 242395218 May 17 03:50 HITS.38776125._008936.pool.root.1
[2024-05-17 03:51:02] -rw------- 1 boinc boinc        95 May 17 03:50 pilot_heartbeat.json
[2024-05-17 03:51:02] -rw------- 1 boinc boinc      1043 May 17 03:50 memory_monitor_summary.json
[2024-05-17 03:51:02] -rw------- 1 boinc boinc    347124 May 17 03:50 log.38776125._008936.job.log.tgz.1
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc      8192 May 17 03:50 boinc_mmap_file
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc        27 May 17 03:50 wrapper_checkpoint.txt
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc       530 May 17 03:50 boinc_task_state.xml
[2024-05-17 03:51:02] -rw------- 1 boinc boinc      7758 May 17 03:50 heartbeat.json
[2024-05-17 03:51:02] -rw------- 1 boinc boinc      4405 May 17 03:51 pilotlog.txt
[2024-05-17 03:51:02] -rw------- 1 boinc boinc    381279 May 17 03:51 log.38776125._008936.job.log.1
[2024-05-17 03:51:02] -rw------- 1 boinc boinc       357 May 17 03:51 output.list
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc       620 May 17 03:51 runtime_log
[2024-05-17 03:51:02] -rw------- 1 boinc boinc    747520 May 17 03:51 result.tar.gz
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc     11286 May 17 03:51 runtime_log.err
[2024-05-17 03:51:02] -rw------- 1 boinc boinc       653 May 17 03:51 b5PKDmhryQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmT6LKDmSFLmzn.diag
[2024-05-17 03:51:02] -rw-r--r-- 1 boinc boinc     21321 May 17 03:51 stderr.txt
[2024-05-17 03:51:02] HITS file was successfully produced:
[2024-05-17 03:51:02] -rw------- 1 boinc boinc 242395218 May 17 03:50 shared/HITS.pool.root.1
[2024-05-17 03:51:02]  *** Contents of shared directory: ***
[2024-05-17 03:51:02] total 822200
[2024-05-17 03:51:02] -rw-r--r-- 2 boinc boinc 598273926 May 17 02:48 ATLAS.root_0
[2024-05-17 03:51:02] -rw-r--r-- 2 boinc boinc    480011 May 17 02:48 input.tar.gz
[2024-05-17 03:51:02] -rw-r--r-- 2 boinc boinc     17537 May 17 02:48 start_atlas.sh
[2024-05-17 03:51:02] -rw------- 1 boinc boinc 242395218 May 17 03:50 HITS.pool.root.1
[2024-05-17 03:51:02] -rw------- 1 boinc boinc    747520 May 17 03:51 result.tar.gz
03:51:03 (121966): run_atlas exited; CPU time 32204.778529
03:51:03 (121966): called boinc_finish(0)

</stderr_txt>
]]>

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