Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:55:48 (4181308): wrapper (7.7.26015): starting
17:55:48 (4181308): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 17:55:48] Arguments: --nthreads 4
[2024-05-15 17:55:48] Threads: 4
[2024-05-15 17:55:48] Checking for CVMFS
[2024-05-15 17:55:48] No cvmfs_config command found, will try listing directly
[2024-05-15 17:55:48] CVMFS is ok
[2024-05-15 17:55:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 17:55:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 17:55:48] Further information can be found at the LHC@home message board.
[2024-05-15 17:55:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 17:55:48] Checking for apptainer binary...
[2024-05-15 17:55:48] which: no apptainer in ((null))
[2024-05-15 17:55:48] apptainer is not installed, using version from CVMFS
[2024-05-15 17:55:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 17:55:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-05-15 17:55:49] apptainer works
[2024-05-15 17:55:49] Set ATHENA_PROC_NUMBER=4
[2024-05-15 17:55:49] Set ATHENA_CORE_NUMBER=4
[2024-05-15 17:55:49] Starting ATLAS job with PandaID=6205834653
[2024-05-15 17:55:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:33:57 (308511): wrapper (7.7.26015): starting
18:33:57 (308511): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 18:33:57] Arguments: --nthreads 4
[2024-05-15 18:33:57] Threads: 4
[2024-05-15 18:33:57] This job has been restarted, cleaning up previous attempt
[2024-05-15 18:33:57] Checking for CVMFS
[2024-05-15 18:33:57] No cvmfs_config command found, will try listing directly
[2024-05-15 18:33:57] CVMFS is ok
[2024-05-15 18:33:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 18:33:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 18:33:57] Further information can be found at the LHC@home message board.
[2024-05-15 18:33:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 18:33:57] Checking for apptainer binary...
[2024-05-15 18:33:57] which: no apptainer in ((null))
[2024-05-15 18:33:57] apptainer is not installed, using version from CVMFS
[2024-05-15 18:33:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 18:33:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-05-15 18:33:58] apptainer works
[2024-05-15 18:33:58] Set ATHENA_PROC_NUMBER=4
[2024-05-15 18:33:58] Set ATHENA_CORE_NUMBER=4
[2024-05-15 18:33:58] Starting ATLAS job with PandaID=6205834653
[2024-05-15 18:33:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 21:42:15]  *** The last 200 lines of the pilot log: ***
[2024-05-15 21:42:15] 2024-05-15 19:42:00,585 | INFO     | fitting pss+swap vs Time
[2024-05-15 21:42:15] 2024-05-15 19:42:00,585 | INFO     | model: linear, x: [1715790873.0, 1715790934.0, 1715790995.0, 1715791056.0, 1715791117.0, 1715791178.0, 1715791239.0, 1715791300.0, 1715791361.0, 1715791422.0, 1715
[2024-05-15 21:42:15] 2024-05-15 19:42:00,586 | INFO     | sum of square deviations: 1963274020.0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,587 | INFO     | sum of deviations: 70421927264.00002
[2024-05-15 21:42:15] 2024-05-15 19:42:00,587 | INFO     | mean x: 1715796485.0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,587 | INFO     | mean y: 2269351.962162162
[2024-05-15 21:42:15] 2024-05-15 19:42:00,587 | INFO     | -- intersect: -61542728460.669655
[2024-05-15 21:42:15] 2024-05-15 19:42:00,587 | INFO     | intersect: -61542728460.669655
[2024-05-15 21:42:15] 2024-05-15 19:42:00,587 | INFO     | chi2: 4.937796505258476
[2024-05-15 21:42:15] 2024-05-15 19:42:00,588 | INFO     | model: linear, x: [1715790873.0, 1715790934.0, 1715790995.0, 1715791056.0, 1715791117.0, 1715791178.0, 1715791239.0, 1715791300.0, 1715791361.0, 1715791422.0, 1715
[2024-05-15 21:42:15] 2024-05-15 19:42:00,588 | INFO     | sum of square deviations: 1808350185.0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,589 | INFO     | sum of deviations: 79909301062.0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,589 | INFO     | mean x: 1715796332.5
[2024-05-15 21:42:15] 2024-05-15 19:42:00,589 | INFO     | mean y: 2278438.8666666667
[2024-05-15 21:42:15] 2024-05-15 19:42:00,589 | INFO     | -- intersect: -75817154562.61139
[2024-05-15 21:42:15] 2024-05-15 19:42:00,589 | INFO     | intersect: -75817154562.61139
[2024-05-15 21:42:15] 2024-05-15 19:42:00,589 | INFO     | chi2: 4.164451354215186
[2024-05-15 21:42:15] 2024-05-15 19:42:00,590 | INFO     | current chi2=4.164451354215186 (change=15.661746088963383 %)
[2024-05-15 21:42:15] 2024-05-15 19:42:00,590 | INFO     | right removable region: 179
[2024-05-15 21:42:15] 2024-05-15 19:42:00,590 | INFO     | model: linear, x: [1715791178.0, 1715791239.0, 1715791300.0, 1715791361.0, 1715791422.0, 1715791483.0, 1715791544.0, 1715791605.0, 1715791666.0, 1715791727.0, 1715
[2024-05-15 21:42:15] 2024-05-15 19:42:00,590 | INFO     | sum of square deviations: 1808350185.0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,591 | INFO     | sum of deviations: 27944134769.999996
[2024-05-15 21:42:15] 2024-05-15 19:42:00,592 | INFO     | mean x: 1715796637.5
[2024-05-15 21:42:15] 2024-05-15 19:42:00,592 | INFO     | mean y: 2311043.388888889
[2024-05-15 21:42:15] 2024-05-15 19:42:00,592 | INFO     | -- intersect: -26511609144.15091
[2024-05-15 21:42:15] 2024-05-15 19:42:00,592 | INFO     | intersect: -26511609144.15091
[2024-05-15 21:42:15] 2024-05-15 19:42:00,592 | INFO     | chi2: 2.4391551144406147
[2024-05-15 21:42:15] 2024-05-15 19:42:00,592 | INFO     | current chi2=2.4391551144406147 (change=50.60235649964409 %)
[2024-05-15 21:42:15] 2024-05-15 19:42:00,592 | INFO     | model: linear, x: [1715791483.0, 1715791544.0, 1715791605.0, 1715791666.0, 1715791727.0, 1715791788.0, 1715791849.0, 1715791910.0, 1715791971.0, 1715792032.0, 1715
[2024-05-15 21:42:15] 2024-05-15 19:42:00,593 | INFO     | sum of square deviations: 1661798600.0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,594 | INFO     | sum of deviations: -7341763092.0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,594 | INFO     | mean x: 1715796790.0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,594 | INFO     | mean y: 2347767.5542857144
[2024-05-15 21:42:15] 2024-05-15 19:42:00,594 | INFO     | -- intersect: 7582672811.873179
[2024-05-15 21:42:15] 2024-05-15 19:42:00,594 | INFO     | intersect: 7582672811.873179
[2024-05-15 21:42:15] 2024-05-15 19:42:00,594 | INFO     | chi2: 0.860903741537649
[2024-05-15 21:42:15] 2024-05-15 19:42:00,594 | INFO     | current chi2=0.860903741537649 (change=64.70483830893696 %)
[2024-05-15 21:42:15] 2024-05-15 19:42:00,595 | INFO     | model: linear, x: [1715791788.0, 1715791849.0, 1715791910.0, 1715791971.0, 1715792032.0, 1715792093.0, 1715792154.0, 1715792215.0, 1715792276.0, 1715792337.0, 1715
[2024-05-15 21:42:15] 2024-05-15 19:42:00,595 | INFO     | sum of square deviations: 1523386702.5
[2024-05-15 21:42:15] 2024-05-15 19:42:00,596 | INFO     | sum of deviations: -11252936448.0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,596 | INFO     | mean x: 1715796942.5
[2024-05-15 21:42:15] 2024-05-15 19:42:00,596 | INFO     | mean y: 2352012.129411765
[2024-05-15 21:42:15] 2024-05-15 19:42:00,597 | INFO     | -- intersect: 12676582343.758036
[2024-05-15 21:42:15] 2024-05-15 19:42:00,597 | INFO     | intersect: 12676582343.758036
[2024-05-15 21:42:15] 2024-05-15 19:42:00,597 | INFO     | chi2: 0.8177125141046074
[2024-05-15 21:42:15] 2024-05-15 19:42:00,597 | INFO     | current chi2=0.8177125141046074 (change=5.016963610344904 %)
[2024-05-15 21:42:15] 2024-05-15 19:42:00,598 | INFO     | left removable region: 30
[2024-05-15 21:42:15] 2024-05-15 19:42:00,598 | INFO     | model: linear, x: [1715792703.0, 1715792764.0, 1715792825.0, 1715792886.0, 1715792947.0, 1715793008.0, 1715793069.0, 1715793130.0, 1715793191.0, 1715793252.0, 1715
[2024-05-15 21:42:15] 2024-05-15 19:42:00,598 | INFO     | sum of square deviations: 1025693650.0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,599 | INFO     | sum of deviations: 365855673.99999994
[2024-05-15 21:42:15] 2024-05-15 19:42:00,599 | INFO     | mean x: 1715797217.0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,599 | INFO     | mean y: 2363372.0738255032
[2024-05-15 21:42:15] 2024-05-15 19:42:00,599 | INFO     | -- intersect: -609646020.0803125
[2024-05-15 21:42:15] 2024-05-15 19:42:00,599 | INFO     | intersect: -609646020.0803125
[2024-05-15 21:42:15] 2024-05-15 19:42:00,599 | INFO     | chi2: 0.0015865061390043116
[2024-05-15 21:42:15] 2024-05-15 19:42:00,599 | INFO     | -- intersect: -609646020.0803125
[2024-05-15 21:42:15] 2024-05-15 19:42:00,600 | INFO     | current memory leak: 0.36 B/s (using 149 data points, chi2=0.00)
[2024-05-15 21:42:15] 2024-05-15 19:42:00,600 | INFO     | ..............................
[2024-05-15 21:42:15] 2024-05-15 19:42:00,600 | INFO     | . Timing measurements:
[2024-05-15 21:42:15] 2024-05-15 19:42:00,601 | INFO     | . get job = 0 s
[2024-05-15 21:42:15] 2024-05-15 19:42:00,601 | INFO     | . initial setup = 0 s
[2024-05-15 21:42:15] 2024-05-15 19:42:00,601 | INFO     | . payload setup = 5 s
[2024-05-15 21:42:15] 2024-05-15 19:42:00,601 | INFO     | . stage-in = 0 s
[2024-05-15 21:42:15] 2024-05-15 19:42:00,601 | INFO     | . payload execution = 11241 s
[2024-05-15 21:42:15] 2024-05-15 19:42:00,601 | INFO     | . stage-out = 0 s
[2024-05-15 21:42:15] 2024-05-15 19:42:00,601 | INFO     | . log creation = 0 s
[2024-05-15 21:42:15] 2024-05-15 19:42:00,601 | INFO     | ..............................
[2024-05-15 21:42:15] 2024-05-15 19:42:00,689 | INFO     | 
[2024-05-15 21:42:15] 2024-05-15 19:42:00,690 | INFO     | job summary report
[2024-05-15 21:42:15] 2024-05-15 19:42:00,690 | INFO     | --------------------------------------------------
[2024-05-15 21:42:15] 2024-05-15 19:42:00,690 | INFO     | PanDA job id: 6205834653
[2024-05-15 21:42:15] 2024-05-15 19:42:00,690 | INFO     | task id: 38776125
[2024-05-15 21:42:15] 2024-05-15 19:42:00,690 | INFO     | errors: (none)
[2024-05-15 21:42:15] 2024-05-15 19:42:00,690 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 21:42:15] 2024-05-15 19:42:00,690 | INFO     | pilot state: finished 
[2024-05-15 21:42:15] 2024-05-15 19:42:00,690 | INFO     | transexitcode: 0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | exeerrorcode: 0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | exeerrordiag: 
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | exitcode: 0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | exitmsg: OK
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | cpuconsumptiontime: 42248 s
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | nevents: 400
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | neventsw: 0
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | pid: 349229
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | pgrp: 349229
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | corecount: 4
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | event service: False
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | sizes: {0: 2392154, 5: 2392360, 11: 2392416, 11250: 2421584, 11251: 2430566, 11252: 2430622, 11258: 2430920}
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | --------------------------------------------------
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | 
[2024-05-15 21:42:15] 2024-05-15 19:42:00,691 | INFO     | executing command: ls -lF /scratch/boinc/var/slot80/slots/1
[2024-05-15 21:42:15] 2024-05-15 19:42:00,774 | WARNING  | process 349229 is no longer using CPU - aborting
[2024-05-15 21:42:15] 2024-05-15 19:42:00,774 | INFO     | aborting job monitoring since job object (job id=6205834653) has expired
[2024-05-15 21:42:15] 2024-05-15 19:42:00,799 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,799 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,799 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,799 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,800 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,800 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,800 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,800 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,800 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,800 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,800 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,800 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,800 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,800 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,800 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,801 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 21:42:15] 2024-05-15 19:42:00,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,801 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 21:42:15] 2024-05-15 19:42:00,801 | INFO     | job 6205834653 has completed (purged errors)
[2024-05-15 21:42:15] 2024-05-15 19:42:00,801 | INFO     | overall cleanup function is called
[2024-05-15 21:42:15] 2024-05-15 19:42:01,808 | INFO     | --- collectZombieJob: --- 10, [349229]
[2024-05-15 21:42:15] 2024-05-15 19:42:01,808 | INFO     | zombie collector waiting for pid 349229
[2024-05-15 21:42:15] 2024-05-15 19:42:01,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 21:42:15] 2024-05-15 19:42:02,813 | INFO     | collected zombie processes
[2024-05-15 21:42:15] 2024-05-15 19:42:02,813 | INFO     | will now attempt to kill all subprocesses of pid=349229
[2024-05-15 21:42:15] 2024-05-15 19:42:03,046 | INFO     | process IDs to be killed: [349229] (in reverse order)
[2024-05-15 21:42:15] 2024-05-15 19:42:03,231 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 21:42:15] 2024-05-15 19:42:03,232 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 21:42:15] 2024-05-15 19:42:03,250 | INFO     | did not find any defunct processes belonging to 349229
[2024-05-15 21:42:15] 2024-05-15 19:42:03,265 | INFO     | did not find any defunct processes belonging to 349229
[2024-05-15 21:42:15] 2024-05-15 19:42:03,265 | INFO     | ready for new job
[2024-05-15 21:42:15] 2024-05-15 19:42:03,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 21:42:15] 2024-05-15 19:42:03,267 | INFO     | *************************************
[2024-05-15 21:42:15] 2024-05-15 19:42:03,268 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 21:42:15] 2024-05-15 19:42:03,268 | INFO     | *************************************
[2024-05-15 21:42:15] 2024-05-15 19:42:03,268 | INFO     | 
[2024-05-15 21:42:15] 2024-05-15 19:42:03,277 | INFO     | architecture information:
[2024-05-15 21:42:15] 2024-05-15 19:42:03,277 | INFO     | executing command: cat /etc/os-release
[2024-05-15 21:42:15] 2024-05-15 19:42:03,294 | INFO     | cat /etc/os-release:
[2024-05-15 21:42:15] NAME="CentOS Linux"
[2024-05-15 21:42:15] VERSION="7 (Core)"
[2024-05-15 21:42:15] ID="centos"
[2024-05-15 21:42:15] ID_LIKE="rhel fedora"
[2024-05-15 21:42:15] VERSION_ID="7"
[2024-05-15 21:42:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 21:42:15] ANSI_COLOR="0;31"
[2024-05-15 21:42:15] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 21:42:15] HOME_URL="https://www.centos.org/"
[2024-05-15 21:42:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 21:42:15] 
[2024-05-15 21:42:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 21:42:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 21:42:15] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 21:42:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 21:42:15] 
[2024-05-15 21:42:15] 2024-05-15 19:42:03,294 | INFO     | *************************************
[2024-05-15 21:42:15] 2024-05-15 19:42:03,797 | INFO     | executing command: df -mP /scratch/boinc/var/slot80/slots/1
[2024-05-15 21:42:15] 2024-05-15 19:42:03,823 | INFO     | sufficient remaining disk space (3099102019584 B)
[2024-05-15 21:42:15] 2024-05-15 19:42:03,823 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 21:42:15] 2024-05-15 19:42:03,823 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 21:42:15] 2024-05-15 19:42:03,824 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-15 21:42:15] 2024-05-15 19:42:03,824 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 21:42:15] 2024-05-15 19:42:03,824 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 21:42:15] 2024-05-15 19:42:03,824 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 21:42:15] 2024-05-15 19:42:04,280 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 21:42:15] 2024-05-15 19:42:04,280 | INFO     | aborting loop
[2024-05-15 21:42:15] 2024-05-15 19:42:04,504 | INFO     | all data control threads have been joined
[2024-05-15 21:42:15] 2024-05-15 19:42:04,662 | INFO     | all payload control threads have been joined
[2024-05-15 21:42:15] 2024-05-15 19:42:04,828 | INFO     | [job] retrieve thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:04,862 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:04,916 | INFO     | [job] validate thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:04,933 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:05,001 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 21:42:15] 2024-05-15 19:42:05,009 | INFO     | all job control threads have been joined
[2024-05-15 21:42:15] 2024-05-15 19:42:05,096 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 21:42:15] 2024-05-15 19:42:05,281 | INFO     | [job] job monitor thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:05,501 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:05,509 | INFO     | [data] control thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:05,557 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:05,670 | INFO     | [payload] control thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:05,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 21:42:15] 2024-05-15 19:42:05,700 | INFO     | [payload] validate_post thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:06,015 | INFO     | [job] control thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:06,021 | INFO     | [payload] failed_post thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:06,241 | INFO     | [data] copytool_in thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:06,699 | INFO     | [job] queue monitor thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:07,006 | INFO     | [data] copytool_out thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:09,101 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 21:42:15] 2024-05-15 19:42:09,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47126759150656)>', '<ExcThread(monitor, started 47126927972096)>']
[2024-05-15 21:42:15] 2024-05-15 19:42:09,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 21:42:15] 2024-05-15 19:42:09,854 | INFO     | [monitor] control thread has ended
[2024-05-15 21:42:15] 2024-05-15 19:42:14,148 | INFO     | all workflow threads have been joined
[2024-05-15 21:42:15] 2024-05-15 19:42:14,149 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 21:42:15] 2024-05-15 19:42:14,149 | INFO     | traces error code: 0
[2024-05-15 21:42:15] 2024-05-15 19:42:14,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 21:42:15] 2024-05-15 19:42:14,215 [wrapper] ==== pilot stdout END ====
[2024-05-15 21:42:15] 2024-05-15 19:42:14,218 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 21:42:15] 2024-05-15 19:42:14,220 [wrapper] pilotpid: 318583
[2024-05-15 21:42:15] 2024-05-15 19:42:14,221 [wrapper] Pilot exit status: 0
[2024-05-15 21:42:15] 2024-05-15 19:42:14,229 [wrapper] pandaids: 6205834653 6205834653
[2024-05-15 21:42:15] 2024-05-15 19:42:14,319 [wrapper] cleanup: SIGTERM to supervisor_pilot 1509886 318585
[2024-05-15 21:42:15] 2024-05-15 19:42:14,321 [wrapper] Test setup, not cleaning
[2024-05-15 21:42:15] 2024-05-15 19:42:14,323 [wrapper] ==== wrapper stdout END ====
[2024-05-15 21:42:15] 2024-05-15 19:42:14,325 [wrapper] ==== wrapper stderr END ====
[2024-05-15 21:42:15] 2024-05-15 19:42:14,328 [wrapper] apfmon messages muted
[2024-05-15 21:42:15]  *** Error codes and diagnostics ***
[2024-05-15 21:42:15]     "exeErrorCode": 0,
[2024-05-15 21:42:15]     "exeErrorDiag": "",
[2024-05-15 21:42:15]     "pilotErrorCode": 0,
[2024-05-15 21:42:15]     "pilotErrorDiag": "",
[2024-05-15 21:42:15]  *** Listing of results directory ***
[2024-05-15 21:42:15] total 1423620
[2024-05-15 21:42:15] drwx------ 4 boinc boinc      4096 May  8 14:24 pilot3
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc    467845 May 13 14:18 pilot3.tar.gz
[2024-05-15 21:42:15] -rwx------ 1 boinc boinc     32251 May 13 14:21 runpilot2-wrapper.sh
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc      5633 May 13 14:21 queuedata.json
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc       100 May 15 17:55 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 21:42:15] -rwxr-xr-x 1 boinc boinc      7986 May 15 17:55 run_atlas
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc       105 May 15 17:55 job.xml
[2024-05-15 21:42:15] -rw-r--r-- 3 boinc boinc 603957672 May 15 17:55 EVNT.38776119._000206.pool.root.1
[2024-05-15 21:42:15] -rw-r--r-- 3 boinc boinc 603957672 May 15 17:55 ATLAS.root_0
[2024-05-15 21:42:15] -rw-r--r-- 2 boinc boinc     17537 May 15 17:55 start_atlas.sh
[2024-05-15 21:42:15] drwxrwx--x 2 boinc boinc      4096 May 15 17:55 shared
[2024-05-15 21:42:15] -rw-r--r-- 2 boinc boinc    480002 May 15 17:55 input.tar.gz
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc         0 May 15 17:55 boinc_lockfile
[2024-05-15 21:42:15] -rw------- 1 boinc boinc   1324701 May 15 17:55 cric_ddmendpoints.json
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc      2632 May 15 18:33 pandaJob.out
[2024-05-15 21:42:15] -rw------- 1 boinc boinc       424 May 15 18:33 setup.sh.local
[2024-05-15 21:42:15] -rw------- 1 boinc boinc   1011281 May 15 18:34 agis_schedconf.cvmfs.json
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc      6649 May 15 18:57 init_data.xml
[2024-05-15 21:42:15] -rw------- 1 boinc boinc 243389934 May 15 21:41 HITS.38776125._005046.pool.root.1
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc       532 May 15 21:41 boinc_task_state.xml
[2024-05-15 21:42:15] -rw------- 1 boinc boinc        96 May 15 21:41 pilot_heartbeat.json
[2024-05-15 21:42:15] -rw------- 1 boinc boinc      1052 May 15 21:41 memory_monitor_summary.json
[2024-05-15 21:42:15] -rw------- 1 boinc boinc         0 May 15 21:41 agis_ddmendpoints.agis.ALL.json
[2024-05-15 21:42:15] -rw------- 1 boinc boinc    300477 May 15 21:41 log.38776125._005046.job.log.tgz.1
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc      8192 May 15 21:41 boinc_mmap_file
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc        28 May 15 21:41 wrapper_checkpoint.txt
[2024-05-15 21:42:15] -rw------- 1 boinc boinc      7714 May 15 21:42 heartbeat.json
[2024-05-15 21:42:15] -rw------- 1 boinc boinc      4345 May 15 21:42 pilotlog.txt
[2024-05-15 21:42:15] -rw------- 1 boinc boinc   1173883 May 15 21:42 log.38776125._005046.job.log.1
[2024-05-15 21:42:15] -rw------- 1 boinc boinc       357 May 15 21:42 output.list
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc       620 May 15 21:42 runtime_log
[2024-05-15 21:42:15] -rw------- 1 boinc boinc   1495040 May 15 21:42 result.tar.gz
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc     11487 May 15 21:42 runtime_log.err
[2024-05-15 21:42:15] -rw------- 1 boinc boinc       770 May 15 21:42 g5dKDmkrjQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmWgKKDmZVHZim.diag
[2024-05-15 21:42:15] -rw-r--r-- 1 boinc boinc     23270 May 15 21:42 stderr.txt
[2024-05-15 21:42:15] HITS file was successfully produced:
[2024-05-15 21:42:15] -rw------- 1 boinc boinc 243389934 May 15 21:41 shared/HITS.pool.root.1
[2024-05-15 21:42:15]  *** Contents of shared directory: ***
[2024-05-15 21:42:15] total 829452
[2024-05-15 21:42:15] -rw-r--r-- 3 boinc boinc 603957672 May 15 17:55 ATLAS.root_0
[2024-05-15 21:42:15] -rw-r--r-- 2 boinc boinc     17537 May 15 17:55 start_atlas.sh
[2024-05-15 21:42:15] -rw-r--r-- 2 boinc boinc    480002 May 15 17:55 input.tar.gz
[2024-05-15 21:42:15] -rw------- 1 boinc boinc 243389934 May 15 21:41 HITS.pool.root.1
[2024-05-15 21:42:15] -rw------- 1 boinc boinc   1495040 May 15 21:42 result.tar.gz
21:42:16 (308511): run_atlas exited; CPU time 41991.904477
21:42:16 (308511): called boinc_finish(0)

</stderr_txt>
]]>

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