Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-17 15:50:27 (58900): Detected: vboxwrapper 26206
2024-05-17 15:50:27 (58900): Detected: BOINC client v7.16.5
2024-05-17 15:50:27 (58900): Detected: VirtualBox VboxManage Interface (Version: 5.1.22)
2024-05-17 15:50:27 (58900): Successfully copied 'init_data.xml' to the shared directory.
2024-05-17 15:50:28 (58900): Create VM. (boinc_98c3bb71573c8a1c, slot#2)
2024-05-17 15:50:28 (58900): Setting Memory Size for VM. (4400MB)
2024-05-17 15:50:29 (58900): Setting CPU Count for VM. (4)
2024-05-17 15:50:29 (58900): Setting Chipset Options for VM.
2024-05-17 15:50:29 (58900): Setting Graphics Controller Options for VM.
2024-05-17 15:50:29 (58900): Setting Boot Options for VM.
2024-05-17 15:50:30 (58900): Setting Network Configuration for NAT.
2024-05-17 15:50:30 (58900): Enabling VM Network Access.
2024-05-17 15:50:30 (58900): Disabling USB Support for VM.
2024-05-17 15:50:30 (58900): Disabling COM Port Support for VM.
2024-05-17 15:50:31 (58900): Disabling LPT Port Support for VM.
2024-05-17 15:50:31 (58900): Disabling Audio Support for VM.
2024-05-17 15:50:31 (58900): Disabling Clipboard Support for VM.
2024-05-17 15:50:32 (58900): Disabling Drag and Drop Support for VM.
2024-05-17 15:50:32 (58900): Adding storage controller(s) to VM.
2024-05-17 15:50:32 (58900): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-17 15:50:33 (58900): Adding VirtualBox Guest Additions to VM.
2024-05-17 15:50:33 (58900): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-17 15:50:33 (58900): forwarding host port 54734 to guest port 80
2024-05-17 15:50:33 (58900): Enabling remote desktop for VM.
2024-05-17 15:50:34 (58900): Enabling shared directory for VM.
2024-05-17 15:50:34 (58900): Starting VM using VBoxManage interface. (boinc_98c3bb71573c8a1c, slot#2)
2024-05-17 15:50:38 (58900): Successfully started VM. (PID = '56516')
2024-05-17 15:50:38 (58900): Reporting VM Process ID to BOINC.
2024-05-17 15:50:38 (58900): Guest Log: BIOS: VirtualBox 5.1.22
2024-05-17 15:50:38 (58900): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-17 15:50:38 (58900): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-17 15:50:38 (58900): Detected: Web Application Enabled (http://localhost:54734)
2024-05-17 15:50:38 (58900): Detected: Remote Desktop Enabled (localhost:54735)
2024-05-17 15:50:38 (58900): Preference change detected
2024-05-17 15:50:38 (58900): Setting CPU throttle for VM. (100%)
2024-05-17 15:50:38 (58900): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-17 15:50:40 (58900): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-17 15:50:40 (58900): Guest Log: BIOS: Booting from Hard Disk...
2024-05-17 15:50:43 (58900): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-17 15:50:43 (58900): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-17 15:50:43 (58900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-17 15:50:52 (58900): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-17 15:50:52 (58900): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-17 15:51:39 (58900): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.000211 main     Log opened 2024-05-17T15:51:37.948542000Z
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.000311 main     OS Product: Linux
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.000346 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.000375 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.000405 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.000406 main     Process ID: 1323
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.000406 main     Package type: LINUX_64BITS_GENERIC
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.001401 main     5.2.32 r132073 started. Verbose level = 0
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.002127 main     Error: Service 'control' failed to initialize: VERR_INVALID_PARAMETER
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.002294 main     Session 0 is about to close ...
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.002330 main     Stopping all guest processes ...
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.002366 main     Closing all guest files ...
2024-05-17 15:51:39 (58900): Guest Log: 00:00:00.002497 main     Ended.
2024-05-17 15:51:40 (58900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-17 15:51:40 (58900): Guest Log: [INFO] Mounting shared directory
2024-05-17 15:51:40 (58900): Guest Log: [INFO] Checking for init_data.xml
2024-05-17 15:51:43 (58900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-17 15:51:43 (58900): Guest Log: [INFO] Detected branch: prod
2024-05-17 15:51:44 (58900): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-17 15:51:44 (58900): Guest Log: Copying input files
2024-05-17 15:51:54 (58900): Guest Log: Copied input files into RunAtlas.
2024-05-17 15:51:54 (58900): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-17 15:51:54 (58900): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-17 15:51:54 (58900): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-17 15:51:54 (58900): Guest Log: Further information can be found at the LHC@home message board.
2024-05-17 15:52:07 (58900): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-17 15:52:08 (58900): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-17 15:52:08 (58900): Guest Log: 2.6.3.0 1591 0 30196 132841 3 1 3116989 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-05-17 15:52:11 (58900): Guest Log: copied the webapp to /var/www
2024-05-17 15:52:11 (58900): Guest Log: ATHENA_PROC_NUMBER=4
2024-05-17 15:52:11 (58900): Guest Log: ATHENA_CORE_NUMBER=4
2024-05-17 15:52:11 (58900): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-17 15:52:11 (58900): Guest Log:  *** Starting ATLAS job. (PandaID=6205834245 taskID=38776125) ***
2024-05-17 17:30:38 (58900): Status Report: Elapsed Time: '6000.000000'
2024-05-17 17:30:38 (58900): Status Report: CPU Time: '19901.577973'
2024-05-17 19:10:39 (58900): Status Report: Elapsed Time: '12000.000000'
2024-05-17 19:10:39 (58900): Status Report: CPU Time: '43757.937298'
2024-05-17 20:50:40 (58900): Status Report: Elapsed Time: '18000.000000'
2024-05-17 20:50:40 (58900): Status Report: CPU Time: '67573.424360'
2024-05-17 21:00:39 (58900): Guest Log:  *** Job finished ***
2024-05-17 21:00:39 (58900): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:24,506 | INFO     | [payload] failed_post thread has finished
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:25,301 | INFO     | [job] queue monitor thread has finished
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:27,247 | INFO     | [data] queue_monitor thread has finished
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:29,320 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139791280539456)>', '<ExcThread(monitor, started 139790045411072)>']
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:29,969 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:29,970 | INFO     | [monitor] control thread has ended
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,322 | INFO     | all workflow threads have been joined
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,322 | INFO     | end of generic workflow (traces error code: 0)
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,322 | INFO     | traces error code: 0
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,323 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,411 [wrapper] ==== pilot stdout END ====
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,416 [wrapper] ==== wrapper stdout RESUME ====
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,424 [wrapper] pilotpid: 6470
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,430 [wrapper] Pilot exit status: 0
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,515 [wrapper] pandaids: 6205834245
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,572 [wrapper] cleanup: SIGTERM to supervisor_pilot 22829 6471
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,599 [wrapper] Test setup, not cleaning
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,609 [wrapper] ==== wrapper stdout END ====
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,616 [wrapper] ==== wrapper stderr END ====
2024-05-17 21:00:39 (58900): Guest Log: 2024-05-17 21:00:34,631 [wrapper] apfmon messages muted
2024-05-17 21:00:39 (58900): Guest Log:  *** Error codes and diagnostics ***
2024-05-17 21:00:39 (58900): Guest Log:     "exeErrorCode": 0,
2024-05-17 21:00:39 (58900): Guest Log:     "exeErrorDiag": "",
2024-05-17 21:00:39 (58900): Guest Log:     "pilotErrorCode": 0,
2024-05-17 21:00:39 (58900): Guest Log:     "pilotErrorDiag": "",
2024-05-17 21:00:39 (58900): Guest Log:  *** Listing of results directory ***
2024-05-17 21:00:39 (58900): Guest Log: total 246912
2024-05-17 21:00:39 (58900): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 13 11:48 pilot3.tar.gz
2024-05-17 21:00:39 (58900): Guest Log: -rwx------. 1 atlas atlas     32251 May 13 11:58 runpilot2-wrapper.sh
2024-05-17 21:00:39 (58900): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 13 11:58 queuedata.json
2024-05-17 21:00:39 (58900): Guest Log: -rwxr-xr-x. 1 atlas atlas      8989 May 17 15:51 init_data.xml
2024-05-17 21:00:39 (58900): Guest Log: -rwxr-xr-x. 1 atlas atlas    480004 May 17 15:51 input.tar.gz
2024-05-17 21:00:39 (58900): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 May 17 15:51 start_atlas.sh
2024-05-17 21:00:39 (58900): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 17 15:51 EVNT.38776119._000183.pool.root.1 -> /data/./ATLAS.root_0
2024-05-17 21:00:39 (58900): Guest Log: -rw-r--r--. 1 atlas atlas      2632 May 17 15:52 pandaJob.out
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas       424 May 17 15:52 setup.sh.local
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas   1019370 May 17 15:52 agis_schedconf.cvmfs.json
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas   1324701 May 17 15:52 cric_ddmendpoints.json
2024-05-17 21:00:39 (58900): Guest Log: drwx------. 4 atlas atlas      4096 May 17 15:52 pilot3
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas 245396516 May 17 20:59 HITS.38776125._004690.pool.root.1
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas        95 May 17 21:00 pilot_heartbeat.json
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas      1032 May 17 21:00 memory_monitor_summary.json
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas         0 May 17 21:00 agis_ddmendpoints.agis.ALL.json
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas    374495 May 17 21:00 log.38776125._004690.job.log.tgz.1
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas      7733 May 17 21:00 heartbeat.json
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas      4394 May 17 21:00 pilotlog.txt
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas   1610248 May 17 21:00 log.38776125._004690.job.log.1
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas       357 May 17 21:00 output.list
2024-05-17 21:00:39 (58900): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 17 21:00 runtime_log
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas   2007040 May 17 21:00 result.tar.gz
2024-05-17 21:00:39 (58900): Guest Log: -rw-r--r--. 1 atlas atlas     10937 May 17 21:00 runtime_log.err
2024-05-17 21:00:39 (58900): Guest Log: -rw-------. 1 atlas atlas       650 May 17 21:00 A6NKDmsUjQ5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmrwGKDmz3HDim.diag
2024-05-17 21:00:39 (58900): Guest Log: Looking for outputfile HITS.38776125._004690.pool.root.1
2024-05-17 21:00:39 (58900): Guest Log: HITS file was successfully produced
2024-05-17 21:00:40 (58900): Guest Log: -rw-------. 1 atlas atlas 245396516 May 17 20:59 /home/atlas/RunAtlas/HITS.38776125._004690.pool.root.1
2024-05-17 21:00:41 (58900): Guest Log: Successfully finished the ATLAS job!
2024-05-17 21:00:41 (58900): Guest Log: Copying the results back to the shared directory!
2024-05-17 21:00:41 (58900): Guest Log:  *** Contents of shared directory: ***
2024-05-17 21:00:41 (58900): Guest Log: total 831546
2024-05-17 21:00:41 (58900): Guest Log: -rwxrwxrwx. 1 root root 603591185 May 17 12:50 ATLAS.root_0
2024-05-17 21:00:41 (58900): Guest Log: -rwxrwxrwx. 1 root root 245396516 May 17 18:00 HITS.pool.root.1
2024-05-17 21:00:41 (58900): Guest Log: -rwxrwxrwx. 1 root root      8989 May 17 12:50 init_data.xml
2024-05-17 21:00:41 (58900): Guest Log: -rwxrwxrwx. 1 root root    480004 May 13 14:11 input.tar.gz
2024-05-17 21:00:41 (58900): Guest Log: -rwxrwxrwx. 1 root root   2007040 May 17 18:00 result.tar.gz
2024-05-17 21:00:41 (58900): Guest Log: -rwxrwxrwx. 1 root root     17537 May 13 14:11 start_atlas.sh
2024-05-17 21:00:41 (58900): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-17 21:00:41 (58900): VM Completion File Detected.
2024-05-17 21:00:41 (58900): Powering off VM.
2024-05-17 21:00:42 (58900): Successfully stopped VM.
2024-05-17 21:00:42 (58900): Deregistering VM. (boinc_98c3bb71573c8a1c, slot#2)
2024-05-17 21:00:42 (58900): Removing network bandwidth throttle group from VM.
2024-05-17 21:00:42 (58900): Removing VM from VirtualBox.
21:00:47 (58900): called boinc_finish(0)

</stderr_txt>
]]>

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