Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:36:58 (2052351): wrapper (7.7.26015): starting
13:36:58 (2052351): wrapper: running run_atlas (--nthreads 4)
[2024-05-16 13:36:58] Arguments: --nthreads 4
[2024-05-16 13:36:58] Threads: 4
[2024-05-16 13:36:58] Checking for CVMFS
[2024-05-16 13:36:58] No cvmfs_config command found, will try listing directly
[2024-05-16 13:36:58] CVMFS is ok
[2024-05-16 13:36:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-16 13:36:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-16 13:36:58] Further information can be found at the LHC@home message board.
[2024-05-16 13:36:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-16 13:36:58] Checking for apptainer binary...
[2024-05-16 13:36:58] which: no apptainer in ((null))
[2024-05-16 13:36:58] apptainer is not installed, using version from CVMFS
[2024-05-16 13:36:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-16 13:36:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2024-05-16 13:36:58] apptainer works
[2024-05-16 13:36:58] Set ATHENA_PROC_NUMBER=4
[2024-05-16 13:36:58] Set ATHENA_CORE_NUMBER=4
[2024-05-16 13:36:58] Starting ATLAS job with PandaID=6205834085
[2024-05-16 13:36:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 18:21:48]  *** The last 200 lines of the pilot log: ***
[2024-05-16 18:21:48] 2024-05-16 16:21:25,969 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-16 18:21:48] 2024-05-16 16:21:25,969 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-16 18:21:48] 2024-05-16 16:21:25,975 | INFO     | fitting pss+swap vs Time
[2024-05-16 18:21:48] 2024-05-16 16:21:25,976 | INFO     | model: linear, x: [1715859452.0, 1715859513.0, 1715859574.0, 1715859635.0, 1715859696.0, 1715859757.0, 1715859818.0, 1715859879.0, 1715859940.0, 1715860001.0, 1715
[2024-05-16 18:21:48] 2024-05-16 16:21:25,976 | INFO     | sum of square deviations: 6806862510.0
[2024-05-16 18:21:48] 2024-05-16 16:21:25,978 | INFO     | sum of deviations: 101446637552.00003
[2024-05-16 18:21:48] 2024-05-16 16:21:25,979 | INFO     | mean x: 1715867961.5
[2024-05-16 18:21:48] 2024-05-16 16:21:25,979 | INFO     | mean y: 2290813.95
[2024-05-16 18:21:48] 2024-05-16 16:21:25,979 | INFO     | -- intersect: -25570289052.567627
[2024-05-16 18:21:48] 2024-05-16 16:21:25,979 | INFO     | intersect: -25570289052.567627
[2024-05-16 18:21:48] 2024-05-16 16:21:25,980 | INFO     | chi2: 4.582675396787079
[2024-05-16 18:21:48] 2024-05-16 16:21:25,980 | INFO     | model: linear, x: [1715859452.0, 1715859513.0, 1715859574.0, 1715859635.0, 1715859696.0, 1715859757.0, 1715859818.0, 1715859879.0, 1715859940.0, 1715860001.0, 1715
[2024-05-16 18:21:48] 2024-05-16 16:21:25,980 | INFO     | sum of square deviations: 6448679050.0
[2024-05-16 18:21:48] 2024-05-16 16:21:25,983 | INFO     | sum of deviations: 116641212159.0
[2024-05-16 18:21:48] 2024-05-16 16:21:25,983 | INFO     | mean x: 1715867809.0
[2024-05-16 18:21:48] 2024-05-16 16:21:25,983 | INFO     | mean y: 2297176.8254545457
[2024-05-16 18:21:48] 2024-05-16 16:21:25,983 | INFO     | -- intersect: -31033656015.226723
[2024-05-16 18:21:48] 2024-05-16 16:21:25,983 | INFO     | intersect: -31033656015.226723
[2024-05-16 18:21:48] 2024-05-16 16:21:25,984 | INFO     | chi2: 3.837311921160573
[2024-05-16 18:21:48] 2024-05-16 16:21:25,984 | INFO     | current chi2=3.837311921160573 (change=16.26481064203416 %)
[2024-05-16 18:21:48] 2024-05-16 16:21:25,984 | INFO     | right removable region: 274
[2024-05-16 18:21:48] 2024-05-16 16:21:25,984 | INFO     | model: linear, x: [1715859757.0, 1715859818.0, 1715859879.0, 1715859940.0, 1715860001.0, 1715860062.0, 1715860123.0, 1715860184.0, 1715860245.0, 1715860306.0, 1715
[2024-05-16 18:21:48] 2024-05-16 16:21:25,985 | INFO     | sum of square deviations: 6448679050.0
[2024-05-16 18:21:48] 2024-05-16 16:21:25,986 | INFO     | sum of deviations: 37984622408.0
[2024-05-16 18:21:48] 2024-05-16 16:21:25,986 | INFO     | mean x: 1715868114.0
[2024-05-16 18:21:48] 2024-05-16 16:21:25,986 | INFO     | mean y: 2317774.098181818
[2024-05-16 18:21:48] 2024-05-16 16:21:25,986 | INFO     | -- intersect: -10104651716.377094
[2024-05-16 18:21:48] 2024-05-16 16:21:25,986 | INFO     | intersect: -10104651716.377094
[2024-05-16 18:21:48] 2024-05-16 16:21:25,986 | INFO     | chi2: 2.220808428920022
[2024-05-16 18:21:48] 2024-05-16 16:21:25,986 | INFO     | current chi2=2.220808428920022 (change=51.539041353942835 %)
[2024-05-16 18:21:48] 2024-05-16 16:21:25,987 | INFO     | model: linear, x: [1715860062.0, 1715860123.0, 1715860184.0, 1715860245.0, 1715860306.0, 1715860367.0, 1715860428.0, 1715860489.0, 1715860550.0, 1715860611.0, 1715
[2024-05-16 18:21:48] 2024-05-16 16:21:25,987 | INFO     | sum of square deviations: 6103286527.5
[2024-05-16 18:21:48] 2024-05-16 16:21:25,988 | INFO     | sum of deviations: -12139849821.5
[2024-05-16 18:21:48] 2024-05-16 16:21:25,988 | INFO     | mean x: 1715868266.5
[2024-05-16 18:21:48] 2024-05-16 16:21:25,988 | INFO     | mean y: 2339906.8407407408
[2024-05-16 18:21:48] 2024-05-16 16:21:25,988 | INFO     | -- intersect: 3415317976.104021
[2024-05-16 18:21:48] 2024-05-16 16:21:25,988 | INFO     | intersect: 3415317976.104021
[2024-05-16 18:21:48] 2024-05-16 16:21:25,988 | INFO     | chi2: 0.8711825304349241
[2024-05-16 18:21:48] 2024-05-16 16:21:25,989 | INFO     | current chi2=0.8711825304349241 (change=60.77182889392312 %)
[2024-05-16 18:21:48] 2024-05-16 16:21:25,989 | INFO     | model: linear, x: [1715860367.0, 1715860428.0, 1715860489.0, 1715860550.0, 1715860611.0, 1715860672.0, 1715860733.0, 1715860794.0, 1715860855.0, 1715860916.0, 1715
[2024-05-16 18:21:48] 2024-05-16 16:21:25,989 | INFO     | sum of square deviations: 5770452380.0
[2024-05-16 18:21:48] 2024-05-16 16:21:25,990 | INFO     | sum of deviations: -21761332699.0
[2024-05-16 18:21:48] 2024-05-16 16:21:25,990 | INFO     | mean x: 1715868419.0
[2024-05-16 18:21:48] 2024-05-16 16:21:25,990 | INFO     | mean y: 2344287.6226415094
[2024-05-16 18:21:48] 2024-05-16 16:21:25,990 | INFO     | -- intersect: 6473168596.472779
[2024-05-16 18:21:48] 2024-05-16 16:21:25,990 | INFO     | intersect: 6473168596.472779
[2024-05-16 18:21:48] 2024-05-16 16:21:25,991 | INFO     | chi2: 0.7916604352277161
[2024-05-16 18:21:48] 2024-05-16 16:21:25,991 | INFO     | current chi2=0.7916604352277161 (change=9.128063572109033 %)
[2024-05-16 18:21:48] 2024-05-16 16:21:25,991 | INFO     | left removable region: 30
[2024-05-16 18:21:48] 2024-05-16 16:21:25,991 | INFO     | model: linear, x: [1715861282.0, 1715861343.0, 1715861404.0, 1715861465.0, 1715861526.0, 1715861587.0, 1715861648.0, 1715861709.0, 1715861770.0, 1715861831.0, 1715
[2024-05-16 18:21:48] 2024-05-16 16:21:25,991 | INFO     | sum of square deviations: 4504437945.0
[2024-05-16 18:21:48] 2024-05-16 16:21:25,992 | INFO     | sum of deviations: -614577104.4999974
[2024-05-16 18:21:48] 2024-05-16 16:21:25,992 | INFO     | mean x: 1715868693.5
[2024-05-16 18:21:48] 2024-05-16 16:21:25,992 | INFO     | mean y: 2349637.0532786883
[2024-05-16 18:21:48] 2024-05-16 16:21:25,992 | INFO     | -- intersect: 236459558.4751007
[2024-05-16 18:21:48] 2024-05-16 16:21:25,992 | INFO     | intersect: 236459558.4751007
[2024-05-16 18:21:48] 2024-05-16 16:21:25,993 | INFO     | chi2: 0.012635457418539326
[2024-05-16 18:21:48] 2024-05-16 16:21:25,993 | INFO     | -- intersect: 236459558.4751007
[2024-05-16 18:21:48] 2024-05-16 16:21:25,993 | INFO     | current memory leak: -0.14 B/s (using 244 data points, chi2=0.01)
[2024-05-16 18:21:48] 2024-05-16 16:21:25,993 | INFO     | ..............................
[2024-05-16 18:21:48] 2024-05-16 16:21:25,993 | INFO     | . Timing measurements:
[2024-05-16 18:21:48] 2024-05-16 16:21:25,993 | INFO     | . get job = 0 s
[2024-05-16 18:21:48] 2024-05-16 16:21:25,993 | INFO     | . initial setup = 1 s
[2024-05-16 18:21:48] 2024-05-16 16:21:25,993 | INFO     | . payload setup = 4 s
[2024-05-16 18:21:48] 2024-05-16 16:21:25,994 | INFO     | . stage-in = 0 s
[2024-05-16 18:21:48] 2024-05-16 16:21:25,994 | INFO     | . payload execution = 17025 s
[2024-05-16 18:21:48] 2024-05-16 16:21:25,994 | INFO     | . stage-out = 0 s
[2024-05-16 18:21:48] 2024-05-16 16:21:25,994 | INFO     | . log creation = 0 s
[2024-05-16 18:21:48] 2024-05-16 16:21:25,994 | INFO     | ..............................
[2024-05-16 18:21:48] 2024-05-16 16:21:26,186 | INFO     | 
[2024-05-16 18:21:48] 2024-05-16 16:21:26,186 | INFO     | job summary report
[2024-05-16 18:21:48] 2024-05-16 16:21:26,186 | INFO     | --------------------------------------------------
[2024-05-16 18:21:48] 2024-05-16 16:21:26,186 | INFO     | PanDA job id: 6205834085
[2024-05-16 18:21:48] 2024-05-16 16:21:26,186 | INFO     | task id: 38776125
[2024-05-16 18:21:48] 2024-05-16 16:21:26,186 | INFO     | errors: (none)
[2024-05-16 18:21:48] 2024-05-16 16:21:26,186 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 18:21:48] 2024-05-16 16:21:26,187 | INFO     | pilot state: finished 
[2024-05-16 18:21:48] 2024-05-16 16:21:26,187 | INFO     | transexitcode: 0
[2024-05-16 18:21:48] 2024-05-16 16:21:26,187 | INFO     | exeerrorcode: 0
[2024-05-16 18:21:48] 2024-05-16 16:21:26,187 | INFO     | exeerrordiag: 
[2024-05-16 18:21:48] 2024-05-16 16:21:26,187 | INFO     | exitcode: 0
[2024-05-16 18:21:48] 2024-05-16 16:21:26,187 | INFO     | exitmsg: OK
[2024-05-16 18:21:48] 2024-05-16 16:21:26,187 | INFO     | cpuconsumptiontime: 64922 s
[2024-05-16 18:21:48] 2024-05-16 16:21:26,187 | INFO     | nevents: 400
[2024-05-16 18:21:48] 2024-05-16 16:21:26,187 | INFO     | neventsw: 0
[2024-05-16 18:21:48] 2024-05-16 16:21:26,187 | INFO     | pid: 2063445
[2024-05-16 18:21:48] 2024-05-16 16:21:26,187 | INFO     | pgrp: 2063445
[2024-05-16 18:21:48] 2024-05-16 16:21:26,188 | INFO     | corecount: 4
[2024-05-16 18:21:48] 2024-05-16 16:21:26,188 | INFO     | event service: False
[2024-05-16 18:21:48] 2024-05-16 16:21:26,188 | INFO     | sizes: {0: 2392205, 4: 2392411, 11: 2392439, 17034: 2424409, 17035: 2433391, 17037: 2433447, 17043: 2433745}
[2024-05-16 18:21:48] 2024-05-16 16:21:26,188 | INFO     | --------------------------------------------------
[2024-05-16 18:21:48] 2024-05-16 16:21:26,188 | INFO     | 
[2024-05-16 18:21:48] 2024-05-16 16:21:26,188 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/1
[2024-05-16 18:21:48] 2024-05-16 16:21:26,207 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,208 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,209 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,209 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,209 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 18:21:48] 2024-05-16 16:21:26,209 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,209 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 18:21:48] 2024-05-16 16:21:26,209 | INFO     | job 6205834085 has completed (purged errors)
[2024-05-16 18:21:48] 2024-05-16 16:21:26,209 | INFO     | overall cleanup function is called
[2024-05-16 18:21:48] 2024-05-16 16:21:27,215 | INFO     | --- collectZombieJob: --- 10, [2063445]
[2024-05-16 18:21:48] 2024-05-16 16:21:27,216 | INFO     | zombie collector waiting for pid 2063445
[2024-05-16 18:21:48] 2024-05-16 16:21:27,216 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 18:21:48] 2024-05-16 16:21:28,220 | INFO     | collected zombie processes
[2024-05-16 18:21:48] 2024-05-16 16:21:28,221 | INFO     | will now attempt to kill all subprocesses of pid=2063445
[2024-05-16 18:21:48] 2024-05-16 16:21:28,325 | INFO     | process IDs to be killed: [2063445] (in reverse order)
[2024-05-16 18:21:48] 2024-05-16 16:21:28,405 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 18:21:48] 2024-05-16 16:21:28,406 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 18:21:48] 2024-05-16 16:21:28,410 | INFO     | did not find any defunct processes belonging to 2063445
[2024-05-16 18:21:48] 2024-05-16 16:21:28,414 | INFO     | did not find any defunct processes belonging to 2063445
[2024-05-16 18:21:48] 2024-05-16 16:21:28,414 | INFO     | ready for new job
[2024-05-16 18:21:48] 2024-05-16 16:21:28,414 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 18:21:48] 2024-05-16 16:21:28,416 | INFO     | *************************************
[2024-05-16 18:21:48] 2024-05-16 16:21:28,416 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 18:21:48] 2024-05-16 16:21:28,416 | INFO     | *************************************
[2024-05-16 18:21:48] 2024-05-16 16:21:28,416 | INFO     | 
[2024-05-16 18:21:48] 2024-05-16 16:21:28,417 | INFO     | architecture information:
[2024-05-16 18:21:48] 2024-05-16 16:21:28,418 | INFO     | executing command: cat /etc/os-release
[2024-05-16 18:21:48] 2024-05-16 16:21:28,429 | INFO     | cat /etc/os-release:
[2024-05-16 18:21:48] NAME="CentOS Linux"
[2024-05-16 18:21:48] VERSION="7 (Core)"
[2024-05-16 18:21:48] ID="centos"
[2024-05-16 18:21:48] ID_LIKE="rhel fedora"
[2024-05-16 18:21:48] VERSION_ID="7"
[2024-05-16 18:21:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 18:21:48] ANSI_COLOR="0;31"
[2024-05-16 18:21:48] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 18:21:48] HOME_URL="https://www.centos.org/"
[2024-05-16 18:21:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 18:21:48] 
[2024-05-16 18:21:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 18:21:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 18:21:48] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 18:21:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 18:21:48] 
[2024-05-16 18:21:48] 2024-05-16 16:21:28,429 | INFO     | *************************************
[2024-05-16 18:21:48] 2024-05-16 16:21:28,932 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/1
[2024-05-16 18:21:48] 2024-05-16 16:21:28,945 | INFO     | sufficient remaining disk space (1605418090496 B)
[2024-05-16 18:21:48] 2024-05-16 16:21:28,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 18:21:48] 2024-05-16 16:21:28,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 18:21:48] 2024-05-16 16:21:28,946 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 18:21:48] 2024-05-16 16:21:28,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 18:21:48] 2024-05-16 16:21:28,947 | INFO     | aborting loop
[2024-05-16 18:21:48] 2024-05-16 16:21:29,464 | INFO     | all job control threads have been joined
[2024-05-16 18:21:48] 2024-05-16 16:21:29,815 | INFO     | all payload control threads have been joined
[2024-05-16 18:21:48] 2024-05-16 16:21:29,866 | INFO     | all data control threads have been joined
[2024-05-16 18:21:48] 2024-05-16 16:21:29,885 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 18:21:48] 2024-05-16 16:21:29,886 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 18:21:48] 2024-05-16 16:21:29,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 18:21:48] 2024-05-16 16:21:29,951 | INFO     | [job] retrieve thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:29,952 | INFO     | [job] job monitor thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:30,039 | INFO     | [data] copytool_in thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:30,286 | INFO     | [payload] validate_post thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:30,329 | INFO     | [job] validate thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:30,470 | INFO     | [job] control thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:30,522 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:30,528 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:30,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 18:21:48] 2024-05-16 16:21:30,820 | INFO     | [payload] control thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:30,854 | INFO     | [payload] failed_post thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:30,870 | INFO     | [data] control thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:30,914 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:30,951 | INFO     | [data] copytool_out thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:31,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 18:21:48] 2024-05-16 16:21:32,066 | INFO     | [job] queue monitor thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:34,643 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:39,716 | INFO     | job.realtimelogging is not enabled
[2024-05-16 18:21:48] 2024-05-16 16:21:40,721 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 18:21:48] 2024-05-16 16:21:42,784 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47255203046464)>', '<ExcThread(monitor, started 47255376398080)>']
[2024-05-16 18:21:48] 2024-05-16 16:21:42,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 18:21:48] 2024-05-16 16:21:42,951 | INFO     | [monitor] control thread has ended
[2024-05-16 18:21:48] 2024-05-16 16:21:47,809 | INFO     | all workflow threads have been joined
[2024-05-16 18:21:48] 2024-05-16 16:21:47,810 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 18:21:48] 2024-05-16 16:21:47,810 | INFO     | traces error code: 0
[2024-05-16 18:21:48] 2024-05-16 16:21:47,810 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 18:21:48] 2024-05-16 16:21:47,870 [wrapper] ==== pilot stdout END ====
[2024-05-16 18:21:48] 2024-05-16 16:21:47,872 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 18:21:48] 2024-05-16 16:21:47,874 [wrapper] pilotpid: 2056601
[2024-05-16 18:21:48] 2024-05-16 16:21:47,877 [wrapper] Pilot exit status: 0
[2024-05-16 18:21:48] 2024-05-16 16:21:47,884 [wrapper] pandaids: 6205834085
[2024-05-16 18:21:48] 2024-05-16 16:21:47,930 [wrapper] cleanup: SIGTERM to supervisor_pilot 2449189 2056602
[2024-05-16 18:21:48] 2024-05-16 16:21:47,933 [wrapper] Test setup, not cleaning
[2024-05-16 18:21:48] 2024-05-16 16:21:47,935 [wrapper] ==== wrapper stdout END ====
[2024-05-16 18:21:48] 2024-05-16 16:21:47,937 [wrapper] ==== wrapper stderr END ====
[2024-05-16 18:21:48] 2024-05-16 16:21:47,942 [wrapper] apfmon messages muted
[2024-05-16 18:21:48]  *** Error codes and diagnostics ***
[2024-05-16 18:21:48]     "exeErrorCode": 0,
[2024-05-16 18:21:48]     "exeErrorDiag": "",
[2024-05-16 18:21:48]     "pilotErrorCode": 0,
[2024-05-16 18:21:48]     "pilotErrorDiag": "",
[2024-05-16 18:21:48]  *** Listing of results directory ***
[2024-05-16 18:21:48] total 835096
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc    467845 May 13 13:48 pilot3.tar.gz
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc      5633 May 13 13:50 queuedata.json
[2024-05-16 18:21:48] -rwx------ 1 boinc boinc     32251 May 13 13:51 runpilot2-wrapper.sh
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc       100 May 16 13:36 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 18:21:48] -rwxr-xr-x 1 boinc boinc      7986 May 16 13:36 run_atlas
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc       105 May 16 13:36 job.xml
[2024-05-16 18:21:48] -rw-r--r-- 2 boinc boinc 599044935 May 16 13:36 EVNT.38776119._000177.pool.root.1
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc      6457 May 16 13:36 init_data.xml
[2024-05-16 18:21:48] -rw-r--r-- 2 boinc boinc    480013 May 16 13:36 input.tar.gz
[2024-05-16 18:21:48] drwxrwx--x 2 boinc boinc      4096 May 16 13:36 shared
[2024-05-16 18:21:48] -rw-r--r-- 2 boinc boinc     17537 May 16 13:36 start_atlas.sh
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc         0 May 16 13:36 boinc_lockfile
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc      2633 May 16 13:36 pandaJob.out
[2024-05-16 18:21:48] -rw------- 1 boinc boinc       424 May 16 13:36 setup.sh.local
[2024-05-16 18:21:48] -rw------- 1 boinc boinc   1010319 May 16 13:37 agis_schedconf.cvmfs.json
[2024-05-16 18:21:48] -rw------- 1 boinc boinc   1324701 May 16 13:37 cric_ddmendpoints.json
[2024-05-16 18:21:48] drwx------ 4 boinc boinc      4096 May 16 13:37 pilot3
[2024-05-16 18:21:48] -rw------- 1 boinc boinc 248073769 May 16 18:20 HITS.38776125._004534.pool.root.1
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc       531 May 16 18:20 boinc_task_state.xml
[2024-05-16 18:21:48] -rw------- 1 boinc boinc        95 May 16 18:21 pilot_heartbeat.json
[2024-05-16 18:21:48] -rw------- 1 boinc boinc      1049 May 16 18:21 memory_monitor_summary.json
[2024-05-16 18:21:48] -rw------- 1 boinc boinc         0 May 16 18:21 agis_ddmendpoints.agis.ALL.json
[2024-05-16 18:21:48] -rw------- 1 boinc boinc    381089 May 16 18:21 log.38776125._004534.job.log.tgz.1
[2024-05-16 18:21:48] -rw------- 1 boinc boinc      7765 May 16 18:21 heartbeat.json
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc      8192 May 16 18:21 boinc_mmap_file
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc        28 May 16 18:21 wrapper_checkpoint.txt
[2024-05-16 18:21:48] -rw------- 1 boinc boinc      4294 May 16 18:21 pilotlog.txt
[2024-05-16 18:21:48] -rw------- 1 boinc boinc   1864589 May 16 18:21 log.38776125._004534.job.log.1
[2024-05-16 18:21:48] -rw------- 1 boinc boinc       357 May 16 18:21 output.list
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc       620 May 16 18:21 runtime_log
[2024-05-16 18:21:48] -rw------- 1 boinc boinc   2263040 May 16 18:21 result.tar.gz
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc     11410 May 16 18:21 runtime_log.err
[2024-05-16 18:21:48] -rw------- 1 boinc boinc       658 May 16 18:21 YvkNDmfOjQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmicKKDmGIWzxm.diag
[2024-05-16 18:21:48] -rw-r--r-- 1 boinc boinc     21268 May 16 18:21 stderr.txt
[2024-05-16 18:21:48] HITS file was successfully produced:
[2024-05-16 18:21:48] -rw------- 1 boinc boinc 248073769 May 16 18:20 shared/HITS.pool.root.1
[2024-05-16 18:21:48]  *** Contents of shared directory: ***
[2024-05-16 18:21:48] total 829980
[2024-05-16 18:21:48] -rw-r--r-- 2 boinc boinc 599044935 May 16 13:36 ATLAS.root_0
[2024-05-16 18:21:48] -rw-r--r-- 2 boinc boinc    480013 May 16 13:36 input.tar.gz
[2024-05-16 18:21:48] -rw-r--r-- 2 boinc boinc     17537 May 16 13:36 start_atlas.sh
[2024-05-16 18:21:48] -rw------- 1 boinc boinc 248073769 May 16 18:20 HITS.pool.root.1
[2024-05-16 18:21:48] -rw------- 1 boinc boinc   2263040 May 16 18:21 result.tar.gz
18:21:50 (2052351): run_atlas exited; CPU time 64653.416963
18:21:50 (2052351): called boinc_finish(0)

</stderr_txt>
]]>

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