Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:00:30 (3244681): wrapper (7.7.26015): starting
16:00:30 (3244681): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 16:00:30] Arguments: --nthreads 4
[2024-05-15 16:00:30] Threads: 4
[2024-05-15 16:00:30] Checking for CVMFS
[2024-05-15 16:00:30] No cvmfs_config command found, will try listing directly
[2024-05-15 16:00:30] CVMFS is ok
[2024-05-15 16:00:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 16:00:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 16:00:30] Further information can be found at the LHC@home message board.
[2024-05-15 16:00:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 16:00:30] Checking for apptainer binary...
[2024-05-15 16:00:30] which: no apptainer in ((null))
[2024-05-15 16:00:30] apptainer is not installed, using version from CVMFS
[2024-05-15 16:00:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 16:00:31] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-05-15 16:00:31] apptainer works
[2024-05-15 16:00:31] Set ATHENA_PROC_NUMBER=4
[2024-05-15 16:00:31] Set ATHENA_CORE_NUMBER=4
[2024-05-15 16:00:31] Starting ATLAS job with PandaID=6205834070
[2024-05-15 16:00:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 18:54:25]  *** The last 200 lines of the pilot log: ***
[2024-05-15 18:54:25] 2024-05-15 16:54:08,605 | WARNING  | GPU info not found in prmon json
[2024-05-15 18:54:25] 2024-05-15 16:54:08,605 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-15 18:54:25] 2024-05-15 16:54:08,605 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-15 18:54:25] 2024-05-15 16:54:08,608 | INFO     | fitting pss+swap vs Time
[2024-05-15 18:54:25] 2024-05-15 16:54:08,609 | INFO     | model: linear, x: [1715781666.0, 1715781727.0, 1715781788.0, 1715781849.0, 1715781910.0, 1715781971.0, 1715782032.0, 1715782093.0, 1715782154.0, 1715782215.0, 1715
[2024-05-15 18:54:25] 2024-05-15 16:54:08,609 | INFO     | sum of square deviations: 1550429070.0
[2024-05-15 18:54:25] 2024-05-15 16:54:08,610 | INFO     | sum of deviations: 69893704047.00003
[2024-05-15 18:54:25] 2024-05-15 16:54:08,610 | INFO     | mean x: 1715786851.0
[2024-05-15 18:54:25] 2024-05-15 16:54:08,610 | INFO     | mean y: 2240695.397660819
[2024-05-15 18:54:25] 2024-05-15 16:54:08,610 | INFO     | -- intersect: -77345830681.72644
[2024-05-15 18:54:25] 2024-05-15 16:54:08,610 | INFO     | intersect: -77345830681.72644
[2024-05-15 18:54:25] 2024-05-15 16:54:08,610 | INFO     | chi2: 4.956660805409576
[2024-05-15 18:54:25] 2024-05-15 16:54:08,611 | INFO     | model: linear, x: [1715781666.0, 1715781727.0, 1715781788.0, 1715781849.0, 1715781910.0, 1715781971.0, 1715782032.0, 1715782093.0, 1715782154.0, 1715782215.0, 1715
[2024-05-15 18:54:25] 2024-05-15 16:54:08,611 | INFO     | sum of square deviations: 1418361477.5
[2024-05-15 18:54:25] 2024-05-15 16:54:08,612 | INFO     | sum of deviations: 78339832672.00002
[2024-05-15 18:54:25] 2024-05-15 16:54:08,612 | INFO     | mean x: 1715786698.5
[2024-05-15 18:54:25] 2024-05-15 16:54:08,612 | INFO     | mean y: 2250148.8554216865
[2024-05-15 18:54:25] 2024-05-15 16:54:08,612 | INFO     | -- intersect: -94765159283.50723
[2024-05-15 18:54:25] 2024-05-15 16:54:08,612 | INFO     | intersect: -94765159283.50723
[2024-05-15 18:54:25] 2024-05-15 16:54:08,612 | INFO     | chi2: 4.150669618984108
[2024-05-15 18:54:25] 2024-05-15 16:54:08,612 | INFO     | current chi2=4.150669618984108 (change=16.26076945886289 %)
[2024-05-15 18:54:25] 2024-05-15 16:54:08,612 | INFO     | right removable region: 165
[2024-05-15 18:54:25] 2024-05-15 16:54:08,613 | INFO     | model: linear, x: [1715781971.0, 1715782032.0, 1715782093.0, 1715782154.0, 1715782215.0, 1715782276.0, 1715782337.0, 1715782398.0, 1715782459.0, 1715782520.0, 1715
[2024-05-15 18:54:25] 2024-05-15 16:54:08,613 | INFO     | sum of square deviations: 1418361477.5
[2024-05-15 18:54:25] 2024-05-15 16:54:08,614 | INFO     | sum of deviations: 30536964047.999992
[2024-05-15 18:54:25] 2024-05-15 16:54:08,614 | INFO     | mean x: 1715787003.5
[2024-05-15 18:54:25] 2024-05-15 16:54:08,614 | INFO     | mean y: 2285998.7228915663
[2024-05-15 18:54:25] 2024-05-15 16:54:08,614 | INFO     | -- intersect: -36938174434.71773
[2024-05-15 18:54:25] 2024-05-15 16:54:08,614 | INFO     | intersect: -36938174434.71773
[2024-05-15 18:54:25] 2024-05-15 16:54:08,614 | INFO     | chi2: 2.4198148570615663
[2024-05-15 18:54:25] 2024-05-15 16:54:08,614 | INFO     | current chi2=2.4198148570615663 (change=51.1805436752775 %)
[2024-05-15 18:54:25] 2024-05-15 16:54:08,615 | INFO     | model: linear, x: [1715782276.0, 1715782337.0, 1715782398.0, 1715782459.0, 1715782520.0, 1715782581.0, 1715782642.0, 1715782703.0, 1715782764.0, 1715782825.0, 1715
[2024-05-15 18:54:25] 2024-05-15 16:54:08,615 | INFO     | sum of square deviations: 1294014960.0
[2024-05-15 18:54:25] 2024-05-15 16:54:08,616 | INFO     | sum of deviations: -1369970451.999998
[2024-05-15 18:54:25] 2024-05-15 16:54:08,616 | INFO     | mean x: 1715787156.0
[2024-05-15 18:54:25] 2024-05-15 16:54:08,616 | INFO     | mean y: 2325137.204968944
[2024-05-15 18:54:25] 2024-05-15 16:54:08,616 | INFO     | -- intersect: 1818824774.61342
[2024-05-15 18:54:25] 2024-05-15 16:54:08,616 | INFO     | intersect: 1818824774.61342
[2024-05-15 18:54:25] 2024-05-15 16:54:08,616 | INFO     | chi2: 0.8959023364917879
[2024-05-15 18:54:25] 2024-05-15 16:54:08,616 | INFO     | current chi2=0.8959023364917879 (change=62.97640979113165 %)
[2024-05-15 18:54:25] 2024-05-15 16:54:08,616 | INFO     | model: linear, x: [1715782581.0, 1715782642.0, 1715782703.0, 1715782764.0, 1715782825.0, 1715782886.0, 1715782947.0, 1715783008.0, 1715783069.0, 1715783130.0, 1715
[2024-05-15 18:54:25] 2024-05-15 16:54:08,617 | INFO     | sum of square deviations: 1177156955.0
[2024-05-15 18:54:25] 2024-05-15 16:54:08,617 | INFO     | sum of deviations: -5754851721.5
[2024-05-15 18:54:25] 2024-05-15 16:54:08,617 | INFO     | mean x: 1715787308.5
[2024-05-15 18:54:25] 2024-05-15 16:54:08,618 | INFO     | mean y: 2330784.25
[2024-05-15 18:54:25] 2024-05-15 16:54:08,618 | INFO     | -- intersect: 8390423386.607412
[2024-05-15 18:54:25] 2024-05-15 16:54:08,618 | INFO     | intersect: 8390423386.607412
[2024-05-15 18:54:25] 2024-05-15 16:54:08,618 | INFO     | chi2: 0.8475330482495887
[2024-05-15 18:54:25] 2024-05-15 16:54:08,618 | INFO     | current chi2=0.8475330482495887 (change=5.398946544955514 %)
[2024-05-15 18:54:25] 2024-05-15 16:54:08,618 | INFO     | left removable region: 30
[2024-05-15 18:54:25] 2024-05-15 16:54:08,618 | INFO     | model: linear, x: [1715783496.0, 1715783557.0, 1715783618.0, 1715783679.0, 1715783740.0, 1715783801.0, 1715783862.0, 1715783923.0, 1715783984.0, 1715784045.0, 1715
[2024-05-15 18:54:25] 2024-05-15 16:54:08,618 | INFO     | sum of square deviations: 762879420.0
[2024-05-15 18:54:25] 2024-05-15 16:54:08,619 | INFO     | sum of deviations: 2069177034.9999998
[2024-05-15 18:54:25] 2024-05-15 16:54:08,619 | INFO     | mean x: 1715787583.0
[2024-05-15 18:54:25] 2024-05-15 16:54:08,619 | INFO     | mean y: 2347230.8074074076
[2024-05-15 18:54:25] 2024-05-15 16:54:08,619 | INFO     | -- intersect: -4651426577.485594
[2024-05-15 18:54:25] 2024-05-15 16:54:08,619 | INFO     | intersect: -4651426577.485594
[2024-05-15 18:54:25] 2024-05-15 16:54:08,619 | INFO     | chi2: 9.465918216649478e-05
[2024-05-15 18:54:25] 2024-05-15 16:54:08,619 | INFO     | -- intersect: -4651426577.485594
[2024-05-15 18:54:25] 2024-05-15 16:54:08,620 | INFO     | current memory leak: 2.71 B/s (using 135 data points, chi2=0.00)
[2024-05-15 18:54:25] 2024-05-15 16:54:08,620 | INFO     | ..............................
[2024-05-15 18:54:25] 2024-05-15 16:54:08,620 | INFO     | . Timing measurements:
[2024-05-15 18:54:25] 2024-05-15 16:54:08,620 | INFO     | . get job = 0 s
[2024-05-15 18:54:25] 2024-05-15 16:54:08,620 | INFO     | . initial setup = 1 s
[2024-05-15 18:54:25] 2024-05-15 16:54:08,620 | INFO     | . payload setup = 5 s
[2024-05-15 18:54:25] 2024-05-15 16:54:08,620 | INFO     | . stage-in = 0 s
[2024-05-15 18:54:25] 2024-05-15 16:54:08,620 | INFO     | . payload execution = 10375 s
[2024-05-15 18:54:25] 2024-05-15 16:54:08,620 | INFO     | . stage-out = 0 s
[2024-05-15 18:54:25] 2024-05-15 16:54:08,620 | INFO     | . log creation = 0 s
[2024-05-15 18:54:25] 2024-05-15 16:54:08,620 | INFO     | ..............................
[2024-05-15 18:54:25] 2024-05-15 16:54:08,679 | INFO     | 
[2024-05-15 18:54:25] 2024-05-15 16:54:08,679 | INFO     | job summary report
[2024-05-15 18:54:25] 2024-05-15 16:54:08,679 | INFO     | --------------------------------------------------
[2024-05-15 18:54:25] 2024-05-15 16:54:08,679 | INFO     | PanDA job id: 6205834070
[2024-05-15 18:54:25] 2024-05-15 16:54:08,679 | INFO     | task id: 38776125
[2024-05-15 18:54:25] 2024-05-15 16:54:08,679 | INFO     | errors: (none)
[2024-05-15 18:54:25] 2024-05-15 16:54:08,679 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | pilot state: finished 
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | transexitcode: 0
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | exeerrorcode: 0
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | exeerrordiag: 
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | exitcode: 0
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | exitmsg: OK
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | cpuconsumptiontime: 38819 s
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | nevents: 400
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | neventsw: 0
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | pid: 3259096
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | pgrp: 3259096
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | corecount: 4
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | event service: False
[2024-05-15 18:54:25] 2024-05-15 16:54:08,680 | INFO     | sizes: {0: 2396651, 4: 2396857, 11: 2396885, 10384: 2425745, 10386: 2434727, 10388: 2434783, 10393: 2435081}
[2024-05-15 18:54:25] 2024-05-15 16:54:08,681 | INFO     | --------------------------------------------------
[2024-05-15 18:54:25] 2024-05-15 16:54:08,681 | INFO     | 
[2024-05-15 18:54:25] 2024-05-15 16:54:08,681 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/1
[2024-05-15 18:54:25] 2024-05-15 16:54:08,707 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,707 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,707 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,707 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,707 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,707 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,707 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,707 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,708 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,708 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,708 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,708 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,708 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,708 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,708 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,708 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,708 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,708 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 18:54:25] 2024-05-15 16:54:08,708 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,709 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 18:54:25] 2024-05-15 16:54:08,709 | INFO     | job 6205834070 has completed (purged errors)
[2024-05-15 18:54:25] 2024-05-15 16:54:08,709 | INFO     | overall cleanup function is called
[2024-05-15 18:54:25] 2024-05-15 16:54:09,716 | INFO     | --- collectZombieJob: --- 10, [3259096]
[2024-05-15 18:54:25] 2024-05-15 16:54:09,716 | INFO     | zombie collector waiting for pid 3259096
[2024-05-15 18:54:25] 2024-05-15 16:54:09,717 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 18:54:25] 2024-05-15 16:54:10,722 | INFO     | collected zombie processes
[2024-05-15 18:54:25] 2024-05-15 16:54:10,722 | INFO     | will now attempt to kill all subprocesses of pid=3259096
[2024-05-15 18:54:25] 2024-05-15 16:54:10,934 | INFO     | process IDs to be killed: [3259096] (in reverse order)
[2024-05-15 18:54:25] 2024-05-15 16:54:11,131 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 18:54:25] 2024-05-15 16:54:11,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 18:54:25] 2024-05-15 16:54:11,145 | INFO     | did not find any defunct processes belonging to 3259096
[2024-05-15 18:54:25] 2024-05-15 16:54:11,154 | INFO     | did not find any defunct processes belonging to 3259096
[2024-05-15 18:54:25] 2024-05-15 16:54:11,154 | INFO     | ready for new job
[2024-05-15 18:54:25] 2024-05-15 16:54:11,154 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 18:54:25] 2024-05-15 16:54:11,156 | INFO     | *************************************
[2024-05-15 18:54:25] 2024-05-15 16:54:11,156 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 18:54:25] 2024-05-15 16:54:11,156 | INFO     | *************************************
[2024-05-15 18:54:25] 2024-05-15 16:54:11,156 | INFO     | 
[2024-05-15 18:54:25] 2024-05-15 16:54:11,161 | INFO     | architecture information:
[2024-05-15 18:54:25] 2024-05-15 16:54:11,161 | INFO     | executing command: cat /etc/os-release
[2024-05-15 18:54:25] 2024-05-15 16:54:11,181 | INFO     | cat /etc/os-release:
[2024-05-15 18:54:25] NAME="CentOS Linux"
[2024-05-15 18:54:25] VERSION="7 (Core)"
[2024-05-15 18:54:25] ID="centos"
[2024-05-15 18:54:25] ID_LIKE="rhel fedora"
[2024-05-15 18:54:25] VERSION_ID="7"
[2024-05-15 18:54:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 18:54:25] ANSI_COLOR="0;31"
[2024-05-15 18:54:25] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 18:54:25] HOME_URL="https://www.centos.org/"
[2024-05-15 18:54:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 18:54:25] 
[2024-05-15 18:54:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 18:54:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 18:54:25] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 18:54:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 18:54:25] 
[2024-05-15 18:54:25] 2024-05-15 16:54:11,181 | INFO     | *************************************
[2024-05-15 18:54:25] 2024-05-15 16:54:11,685 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/1
[2024-05-15 18:54:25] 2024-05-15 16:54:11,710 | INFO     | sufficient remaining disk space (3009790607360 B)
[2024-05-15 18:54:25] 2024-05-15 16:54:11,711 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 18:54:25] 2024-05-15 16:54:11,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 18:54:25] 2024-05-15 16:54:11,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 18:54:25] 2024-05-15 16:54:11,882 | INFO     | aborting loop
[2024-05-15 18:54:25] 2024-05-15 16:54:12,014 | INFO     | all payload control threads have been joined
[2024-05-15 18:54:25] 2024-05-15 16:54:12,105 | INFO     | all data control threads have been joined
[2024-05-15 18:54:25] 2024-05-15 16:54:12,566 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 18:54:25] 2024-05-15 16:54:12,567 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 18:54:25] 2024-05-15 16:54:12,567 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 18:54:25] 2024-05-15 16:54:12,608 | INFO     | all job control threads have been joined
[2024-05-15 18:54:25] 2024-05-15 16:54:12,716 | INFO     | [job] retrieve thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:12,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 18:54:25] 2024-05-15 16:54:12,742 | INFO     | [payload] validate_post thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:12,794 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:12,887 | INFO     | [job] job monitor thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:13,020 | INFO     | [payload] control thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:13,111 | INFO     | [data] control thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:13,130 | INFO     | [job] validate thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:13,263 | INFO     | [data] copytool_in thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:13,346 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:13,460 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:13,560 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:13,614 | INFO     | [job] control thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:13,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 18:54:25] 2024-05-15 16:54:13,890 | INFO     | [payload] failed_post thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:14,602 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 18:54:25] 2024-05-15 16:54:14,692 | INFO     | [job] queue monitor thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:14,733 | INFO     | [data] copytool_out thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:18,608 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 18:54:25] 2024-05-15 16:54:19,296 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 46945476248640)>', '<ExcThread(monitor, started 46945651963648)>']
[2024-05-15 18:54:25] 2024-05-15 16:54:19,601 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 18:54:25] 2024-05-15 16:54:19,601 | INFO     | [monitor] control thread has ended
[2024-05-15 18:54:25] 2024-05-15 16:54:24,321 | INFO     | all workflow threads have been joined
[2024-05-15 18:54:25] 2024-05-15 16:54:24,321 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 18:54:25] 2024-05-15 16:54:24,322 | INFO     | traces error code: 0
[2024-05-15 18:54:25] 2024-05-15 16:54:24,322 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 18:54:25] 2024-05-15 16:54:24,389 [wrapper] ==== pilot stdout END ====
[2024-05-15 18:54:25] 2024-05-15 16:54:24,392 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 18:54:25] 2024-05-15 16:54:24,393 [wrapper] pilotpid: 3251552
[2024-05-15 18:54:25] 2024-05-15 16:54:24,395 [wrapper] Pilot exit status: 0
[2024-05-15 18:54:25] 2024-05-15 16:54:24,412 [wrapper] pandaids: 6205834070
[2024-05-15 18:54:25] 2024-05-15 16:54:24,543 [wrapper] cleanup: SIGTERM to supervisor_pilot 4061178 3251553
[2024-05-15 18:54:25] 2024-05-15 16:54:24,546 [wrapper] Test setup, not cleaning
[2024-05-15 18:54:25] 2024-05-15 16:54:24,548 [wrapper] ==== wrapper stdout END ====
[2024-05-15 18:54:25] 2024-05-15 16:54:24,550 [wrapper] ==== wrapper stderr END ====
[2024-05-15 18:54:25] 2024-05-15 16:54:24,554 [wrapper] apfmon messages muted
[2024-05-15 18:54:25]  *** Error codes and diagnostics ***
[2024-05-15 18:54:25]     "exeErrorCode": 0,
[2024-05-15 18:54:25]     "exeErrorDiag": "",
[2024-05-15 18:54:25]     "pilotErrorCode": 0,
[2024-05-15 18:54:25]     "pilotErrorDiag": "",
[2024-05-15 18:54:25]  *** Listing of results directory ***
[2024-05-15 18:54:25] total 836412
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc    467845 May 13 13:48 pilot3.tar.gz
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc      5633 May 13 13:50 queuedata.json
[2024-05-15 18:54:25] -rwx------ 1 boinc boinc     32251 May 13 13:51 runpilot2-wrapper.sh
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc       100 May 15 16:00 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 18:54:25] -rwxr-xr-x 1 boinc boinc      7986 May 15 16:00 run_atlas
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc       105 May 15 16:00 job.xml
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc      6642 May 15 16:00 init_data.xml
[2024-05-15 18:54:25] -rw-r--r-- 2 boinc boinc 599044935 May 15 16:00 EVNT.38776119._000177.pool.root.1
[2024-05-15 18:54:25] -rw-r--r-- 2 boinc boinc    480006 May 15 16:00 input.tar.gz
[2024-05-15 18:54:25] -rw-r--r-- 2 boinc boinc     17537 May 15 16:00 start_atlas.sh
[2024-05-15 18:54:25] drwxrwx--x 2 boinc boinc      4096 May 15 16:00 shared
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc         0 May 15 16:00 boinc_lockfile
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc      2632 May 15 16:00 pandaJob.out
[2024-05-15 18:54:25] -rw------- 1 boinc boinc       424 May 15 16:00 setup.sh.local
[2024-05-15 18:54:25] -rw------- 1 boinc boinc   1010550 May 15 16:00 agis_schedconf.cvmfs.json
[2024-05-15 18:54:25] -rw------- 1 boinc boinc         0 May 15 16:00 agis_ddmendpoints.agis.ALL.json
[2024-05-15 18:54:25] -rw------- 1 boinc boinc   1325758 May 15 16:00 cric_ddmendpoints.json
[2024-05-15 18:54:25] drwx------ 4 boinc boinc      4096 May 15 16:00 pilot3
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc       532 May 15 18:53 boinc_task_state.xml
[2024-05-15 18:54:25] -rw------- 1 boinc boinc 251163144 May 15 18:53 HITS.38776125._004519.pool.root.1
[2024-05-15 18:54:25] -rw------- 1 boinc boinc      1040 May 15 18:53 memory_monitor_summary.json
[2024-05-15 18:54:25] -rw------- 1 boinc boinc    291400 May 15 18:54 log.38776125._004519.job.log.tgz.1
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc        28 May 15 18:54 wrapper_checkpoint.txt
[2024-05-15 18:54:25] -rw------- 1 boinc boinc      7728 May 15 18:54 heartbeat.json
[2024-05-15 18:54:25] -rw------- 1 boinc boinc        95 May 15 18:54 pilot_heartbeat.json
[2024-05-15 18:54:25] -rw------- 1 boinc boinc      4222 May 15 18:54 pilotlog.txt
[2024-05-15 18:54:25] -rw------- 1 boinc boinc   1082867 May 15 18:54 log.38776125._004519.job.log.1
[2024-05-15 18:54:25] -rw------- 1 boinc boinc       357 May 15 18:54 output.list
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc       620 May 15 18:54 runtime_log
[2024-05-15 18:54:25] -rw------- 1 boinc boinc   1392640 May 15 18:54 result.tar.gz
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc     11410 May 15 18:54 runtime_log.err
[2024-05-15 18:54:25] -rw------- 1 boinc boinc       657 May 15 18:54 ncLNDmfOjQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmTcKKDmzy6Gmm.diag
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc      8192 May 15 18:54 boinc_mmap_file
[2024-05-15 18:54:25] -rw-r--r-- 1 boinc boinc     21269 May 15 18:54 stderr.txt
[2024-05-15 18:54:25] HITS file was successfully produced:
[2024-05-15 18:54:25] -rw------- 1 boinc boinc 251163144 May 15 18:53 shared/HITS.pool.root.1
[2024-05-15 18:54:25]  *** Contents of shared directory: ***
[2024-05-15 18:54:25] total 832148
[2024-05-15 18:54:25] -rw-r--r-- 2 boinc boinc 599044935 May 15 16:00 ATLAS.root_0
[2024-05-15 18:54:25] -rw-r--r-- 2 boinc boinc    480006 May 15 16:00 input.tar.gz
[2024-05-15 18:54:25] -rw-r--r-- 2 boinc boinc     17537 May 15 16:00 start_atlas.sh
[2024-05-15 18:54:25] -rw------- 1 boinc boinc 251163144 May 15 18:53 HITS.pool.root.1
[2024-05-15 18:54:25] -rw------- 1 boinc boinc   1392640 May 15 18:54 result.tar.gz
18:54:26 (3244681): run_atlas exited; CPU time 38572.992847
18:54:26 (3244681): called boinc_finish(0)

</stderr_txt>
]]>

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