Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:43:38 (1581982): wrapper (7.7.26015): starting
08:43:38 (1581982): wrapper: running run_atlas (--nthreads 4)
[2024-05-16 08:43:38] Arguments: --nthreads 4
[2024-05-16 08:43:38] Threads: 4
[2024-05-16 08:43:38] Checking for CVMFS
[2024-05-16 08:43:38] No cvmfs_config command found, will try listing directly
[2024-05-16 08:43:38] CVMFS is ok
[2024-05-16 08:43:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-16 08:43:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-16 08:43:38] Further information can be found at the LHC@home message board.
[2024-05-16 08:43:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-16 08:43:38] Checking for apptainer binary...
[2024-05-16 08:43:38] which: no apptainer in ((null))
[2024-05-16 08:43:38] apptainer is not installed, using version from CVMFS
[2024-05-16 08:43:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-16 08:43:39] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2024-05-16 08:43:39] apptainer works
[2024-05-16 08:43:39] Set ATHENA_PROC_NUMBER=4
[2024-05-16 08:43:39] Set ATHENA_CORE_NUMBER=4
[2024-05-16 08:43:39] Starting ATLAS job with PandaID=6205833961
[2024-05-16 08:43:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 13:32:47]  *** The last 200 lines of the pilot log: ***
[2024-05-16 13:32:47] 2024-05-16 11:32:31,974 | INFO     | fitting pss+swap vs Time
[2024-05-16 13:32:47] 2024-05-16 11:32:31,975 | INFO     | model: linear, x: [1715841858.0, 1715841919.0, 1715841980.0, 1715842041.0, 1715842102.0, 1715842163.0, 1715842224.0, 1715842285.0, 1715842346.0, 1715842407.0, 1715
[2024-05-16 13:32:47] 2024-05-16 11:32:31,975 | INFO     | sum of square deviations: 7102775035.0
[2024-05-16 13:32:47] 2024-05-16 11:32:31,977 | INFO     | sum of deviations: 94097877912.5
[2024-05-16 13:32:47] 2024-05-16 11:32:31,977 | INFO     | mean x: 1715850489.5
[2024-05-16 13:32:47] 2024-05-16 11:32:31,978 | INFO     | mean y: 2295527.3204225353
[2024-05-16 13:32:47] 2024-05-16 11:32:31,978 | INFO     | -- intersect: -22729367672.128544
[2024-05-16 13:32:47] 2024-05-16 11:32:31,978 | INFO     | intersect: -22729367672.128544
[2024-05-16 13:32:47] 2024-05-16 11:32:31,978 | INFO     | chi2: 4.379882596715644
[2024-05-16 13:32:47] 2024-05-16 11:32:31,979 | INFO     | model: linear, x: [1715841858.0, 1715841919.0, 1715841980.0, 1715842041.0, 1715842102.0, 1715842163.0, 1715842224.0, 1715842285.0, 1715842346.0, 1715842407.0, 1715
[2024-05-16 13:32:47] 2024-05-16 11:32:31,979 | INFO     | sum of square deviations: 6734191380.0
[2024-05-16 13:32:47] 2024-05-16 11:32:31,981 | INFO     | sum of deviations: 109673854013.00002
[2024-05-16 13:32:47] 2024-05-16 11:32:31,982 | INFO     | mean x: 1715850337.0
[2024-05-16 13:32:47] 2024-05-16 11:32:31,982 | INFO     | mean y: 2301868.9032258065
[2024-05-16 13:32:47] 2024-05-16 11:32:31,982 | INFO     | -- intersect: -27942243919.799156
[2024-05-16 13:32:47] 2024-05-16 11:32:31,982 | INFO     | intersect: -27942243919.799156
[2024-05-16 13:32:47] 2024-05-16 11:32:31,983 | INFO     | chi2: 3.639836060032675
[2024-05-16 13:32:47] 2024-05-16 11:32:31,983 | INFO     | current chi2=3.639836060032675 (change=16.896492550688688 %)
[2024-05-16 13:32:47] 2024-05-16 11:32:31,983 | INFO     | right removable region: 278
[2024-05-16 13:32:47] 2024-05-16 11:32:31,983 | INFO     | model: linear, x: [1715842163.0, 1715842224.0, 1715842285.0, 1715842346.0, 1715842407.0, 1715842468.0, 1715842529.0, 1715842590.0, 1715842651.0, 1715842712.0, 1715
[2024-05-16 13:32:47] 2024-05-16 11:32:31,983 | INFO     | sum of square deviations: 6734191380.0
[2024-05-16 13:32:47] 2024-05-16 11:32:31,986 | INFO     | sum of deviations: 32878628753.999985
[2024-05-16 13:32:47] 2024-05-16 11:32:31,986 | INFO     | mean x: 1715850642.0
[2024-05-16 13:32:47] 2024-05-16 11:32:31,986 | INFO     | mean y: 2320789.157706093
[2024-05-16 13:32:47] 2024-05-16 11:32:31,986 | INFO     | -- intersect: -8375049717.890541
[2024-05-16 13:32:47] 2024-05-16 11:32:31,986 | INFO     | intersect: -8375049717.890541
[2024-05-16 13:32:47] 2024-05-16 11:32:31,987 | INFO     | chi2: 2.193068956770464
[2024-05-16 13:32:47] 2024-05-16 11:32:31,987 | INFO     | current chi2=2.193068956770464 (change=49.928590359591205 %)
[2024-05-16 13:32:47] 2024-05-16 11:32:31,987 | INFO     | model: linear, x: [1715842468.0, 1715842529.0, 1715842590.0, 1715842651.0, 1715842712.0, 1715842773.0, 1715842834.0, 1715842895.0, 1715842956.0, 1715843017.0, 1715
[2024-05-16 13:32:47] 2024-05-16 11:32:31,988 | INFO     | sum of square deviations: 6378584712.5
[2024-05-16 13:32:47] 2024-05-16 11:32:31,990 | INFO     | sum of deviations: -17371010931.00001
[2024-05-16 13:32:47] 2024-05-16 11:32:31,990 | INFO     | mean x: 1715850794.5
[2024-05-16 13:32:47] 2024-05-16 11:32:31,990 | INFO     | mean y: 2342341.8394160583
[2024-05-16 13:32:47] 2024-05-16 11:32:31,990 | INFO     | -- intersect: 4675175619.229954
[2024-05-16 13:32:47] 2024-05-16 11:32:31,991 | INFO     | intersect: 4675175619.229954
[2024-05-16 13:32:47] 2024-05-16 11:32:31,991 | INFO     | chi2: 0.8709507388312389
[2024-05-16 13:32:47] 2024-05-16 11:32:31,991 | INFO     | current chi2=0.8709507388312389 (change=60.286212791329184 %)
[2024-05-16 13:32:47] 2024-05-16 11:32:31,992 | INFO     | model: linear, x: [1715842773.0, 1715842834.0, 1715842895.0, 1715842956.0, 1715843017.0, 1715843078.0, 1715843139.0, 1715843200.0, 1715843261.0, 1715843322.0, 1715
[2024-05-16 13:32:47] 2024-05-16 11:32:31,992 | INFO     | sum of square deviations: 6035722470.0
[2024-05-16 13:32:47] 2024-05-16 11:32:31,994 | INFO     | sum of deviations: -24611576121.0
[2024-05-16 13:32:47] 2024-05-16 11:32:31,994 | INFO     | mean x: 1715850947.0
[2024-05-16 13:32:47] 2024-05-16 11:32:31,994 | INFO     | mean y: 2345525.6728624534
[2024-05-16 13:32:47] 2024-05-16 11:32:31,994 | INFO     | -- intersect: 6998988662.311388
[2024-05-16 13:32:47] 2024-05-16 11:32:31,995 | INFO     | intersect: 6998988662.311388
[2024-05-16 13:32:47] 2024-05-16 11:32:31,995 | INFO     | chi2: 0.8024526582250432
[2024-05-16 13:32:47] 2024-05-16 11:32:31,995 | INFO     | current chi2=0.8024526582250432 (change=7.864747976230641 %)
[2024-05-16 13:32:47] 2024-05-16 11:32:31,995 | INFO     | left removable region: 30
[2024-05-16 13:32:47] 2024-05-16 11:32:31,996 | INFO     | model: linear, x: [1715843688.0, 1715843749.0, 1715843810.0, 1715843871.0, 1715843932.0, 1715843993.0, 1715844054.0, 1715844115.0, 1715844176.0, 1715844237.0, 1715
[2024-05-16 13:32:47] 2024-05-16 11:32:31,996 | INFO     | sum of square deviations: 4729621702.0
[2024-05-16 13:32:47] 2024-05-16 11:32:31,998 | INFO     | sum of deviations: 4719820161.000002
[2024-05-16 13:32:47] 2024-05-16 11:32:31,998 | INFO     | mean x: 1715851221.5
[2024-05-16 13:32:47] 2024-05-16 11:32:31,998 | INFO     | mean y: 2346866.040322581
[2024-05-16 13:32:47] 2024-05-16 11:32:31,998 | INFO     | -- intersect: -1709948471.4678738
[2024-05-16 13:32:47] 2024-05-16 11:32:31,998 | INFO     | intersect: -1709948471.4678738
[2024-05-16 13:32:47] 2024-05-16 11:32:31,999 | INFO     | chi2: 0.0037328771936684536
[2024-05-16 13:32:47] 2024-05-16 11:32:31,999 | INFO     | -- intersect: -1709948471.4678738
[2024-05-16 13:32:47] 2024-05-16 11:32:31,999 | INFO     | current memory leak: 1.00 B/s (using 248 data points, chi2=0.00)
[2024-05-16 13:32:47] 2024-05-16 11:32:32,000 | INFO     | ..............................
[2024-05-16 13:32:47] 2024-05-16 11:32:32,000 | INFO     | . Timing measurements:
[2024-05-16 13:32:47] 2024-05-16 11:32:32,000 | INFO     | . get job = 0 s
[2024-05-16 13:32:47] 2024-05-16 11:32:32,000 | INFO     | . initial setup = 1 s
[2024-05-16 13:32:47] 2024-05-16 11:32:32,000 | INFO     | . payload setup = 6 s
[2024-05-16 13:32:47] 2024-05-16 11:32:32,000 | INFO     | . stage-in = 0 s
[2024-05-16 13:32:47] 2024-05-16 11:32:32,001 | INFO     | . payload execution = 17284 s
[2024-05-16 13:32:47] 2024-05-16 11:32:32,001 | INFO     | . stage-out = 0 s
[2024-05-16 13:32:47] 2024-05-16 11:32:32,001 | INFO     | . log creation = 0 s
[2024-05-16 13:32:47] 2024-05-16 11:32:32,001 | INFO     | ..............................
[2024-05-16 13:32:47] 2024-05-16 11:32:32,347 | INFO     | 
[2024-05-16 13:32:47] 2024-05-16 11:32:32,348 | INFO     | job summary report
[2024-05-16 13:32:47] 2024-05-16 11:32:32,348 | INFO     | --------------------------------------------------
[2024-05-16 13:32:47] 2024-05-16 11:32:32,348 | INFO     | PanDA job id: 6205833961
[2024-05-16 13:32:47] 2024-05-16 11:32:32,348 | INFO     | task id: 38776125
[2024-05-16 13:32:47] 2024-05-16 11:32:32,348 | INFO     | errors: (none)
[2024-05-16 13:32:47] 2024-05-16 11:32:32,348 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 13:32:47] 2024-05-16 11:32:32,348 | INFO     | pilot state: finished 
[2024-05-16 13:32:47] 2024-05-16 11:32:32,349 | INFO     | transexitcode: 0
[2024-05-16 13:32:47] 2024-05-16 11:32:32,349 | INFO     | exeerrorcode: 0
[2024-05-16 13:32:47] 2024-05-16 11:32:32,349 | INFO     | exeerrordiag: 
[2024-05-16 13:32:47] 2024-05-16 11:32:32,349 | INFO     | exitcode: 0
[2024-05-16 13:32:47] 2024-05-16 11:32:32,349 | INFO     | exitmsg: OK
[2024-05-16 13:32:47] 2024-05-16 11:32:32,349 | INFO     | cpuconsumptiontime: 65738 s
[2024-05-16 13:32:47] 2024-05-16 11:32:32,349 | INFO     | nevents: 400
[2024-05-16 13:32:47] 2024-05-16 11:32:32,350 | INFO     | neventsw: 0
[2024-05-16 13:32:47] 2024-05-16 11:32:32,350 | INFO     | pid: 1593665
[2024-05-16 13:32:47] 2024-05-16 11:32:32,350 | INFO     | pgrp: 1593665
[2024-05-16 13:32:47] 2024-05-16 11:32:32,350 | INFO     | corecount: 4
[2024-05-16 13:32:47] 2024-05-16 11:32:32,350 | INFO     | event service: False
[2024-05-16 13:32:47] 2024-05-16 11:32:32,350 | INFO     | sizes: {0: 2392091, 1: 2392233, 6: 2392439, 11: 2392467, 17294: 2424350, 17295: 2424349, 17296: 2433515, 17300: 2433571, 17305: 2433741}
[2024-05-16 13:32:47] 2024-05-16 11:32:32,350 | INFO     | --------------------------------------------------
[2024-05-16 13:32:47] 2024-05-16 11:32:32,350 | INFO     | 
[2024-05-16 13:32:47] 2024-05-16 11:32:32,351 | INFO     | executing command: ls -lF /scratch/boinc/var/slot20/slots/1
[2024-05-16 13:32:47] 2024-05-16 11:32:32,370 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,370 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,370 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,371 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,371 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,371 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,371 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,371 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,371 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,371 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,372 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,372 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,372 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,372 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,372 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,372 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,372 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,373 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 13:32:47] 2024-05-16 11:32:32,373 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,373 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 13:32:47] 2024-05-16 11:32:32,373 | INFO     | job 6205833961 has completed (purged errors)
[2024-05-16 13:32:47] 2024-05-16 11:32:32,373 | INFO     | overall cleanup function is called
[2024-05-16 13:32:47] 2024-05-16 11:32:33,380 | INFO     | --- collectZombieJob: --- 10, [1593665]
[2024-05-16 13:32:47] 2024-05-16 11:32:33,381 | INFO     | zombie collector waiting for pid 1593665
[2024-05-16 13:32:47] 2024-05-16 11:32:33,381 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 13:32:47] 2024-05-16 11:32:34,385 | INFO     | collected zombie processes
[2024-05-16 13:32:47] 2024-05-16 11:32:34,386 | INFO     | will now attempt to kill all subprocesses of pid=1593665
[2024-05-16 13:32:47] 2024-05-16 11:32:34,533 | INFO     | process IDs to be killed: [1593665] (in reverse order)
[2024-05-16 13:32:47] 2024-05-16 11:32:34,633 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 13:32:47] 2024-05-16 11:32:34,634 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 13:32:47] 2024-05-16 11:32:34,639 | INFO     | did not find any defunct processes belonging to 1593665
[2024-05-16 13:32:47] 2024-05-16 11:32:34,644 | INFO     | did not find any defunct processes belonging to 1593665
[2024-05-16 13:32:47] 2024-05-16 11:32:34,644 | INFO     | ready for new job
[2024-05-16 13:32:47] 2024-05-16 11:32:34,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 13:32:47] 2024-05-16 11:32:34,646 | INFO     | *************************************
[2024-05-16 13:32:47] 2024-05-16 11:32:34,646 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 13:32:47] 2024-05-16 11:32:34,646 | INFO     | *************************************
[2024-05-16 13:32:47] 2024-05-16 11:32:34,646 | INFO     | 
[2024-05-16 13:32:47] 2024-05-16 11:32:34,648 | INFO     | architecture information:
[2024-05-16 13:32:47] 2024-05-16 11:32:34,648 | INFO     | executing command: cat /etc/os-release
[2024-05-16 13:32:47] 2024-05-16 11:32:34,661 | INFO     | cat /etc/os-release:
[2024-05-16 13:32:47] NAME="CentOS Linux"
[2024-05-16 13:32:47] VERSION="7 (Core)"
[2024-05-16 13:32:47] ID="centos"
[2024-05-16 13:32:47] ID_LIKE="rhel fedora"
[2024-05-16 13:32:47] VERSION_ID="7"
[2024-05-16 13:32:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 13:32:47] ANSI_COLOR="0;31"
[2024-05-16 13:32:47] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 13:32:47] HOME_URL="https://www.centos.org/"
[2024-05-16 13:32:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 13:32:47] 
[2024-05-16 13:32:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 13:32:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 13:32:47] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 13:32:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 13:32:47] 
[2024-05-16 13:32:47] 2024-05-16 11:32:34,661 | INFO     | *************************************
[2024-05-16 13:32:47] 2024-05-16 11:32:35,164 | INFO     | executing command: df -mP /scratch/boinc/var/slot20/slots/1
[2024-05-16 13:32:47] 2024-05-16 11:32:35,185 | INFO     | sufficient remaining disk space (1602918285312 B)
[2024-05-16 13:32:47] 2024-05-16 11:32:35,185 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 13:32:47] 2024-05-16 11:32:35,186 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 13:32:47] 2024-05-16 11:32:35,186 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-16 13:32:47] 2024-05-16 11:32:35,186 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 13:32:47] 2024-05-16 11:32:35,186 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 13:32:47] 2024-05-16 11:32:35,186 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 13:32:47] 2024-05-16 11:32:35,234 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-16 13:32:47] 2024-05-16 11:32:35,235 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-16 13:32:47] 2024-05-16 11:32:35,235 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 13:32:47] 2024-05-16 11:32:35,235 | INFO     | will abort loop
[2024-05-16 13:32:47] 2024-05-16 11:32:35,337 | INFO     | all payload control threads have been joined
[2024-05-16 13:32:47] 2024-05-16 11:32:36,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 13:32:47] 2024-05-16 11:32:36,172 | INFO     | all job control threads have been joined
[2024-05-16 13:32:47] 2024-05-16 11:32:36,191 | INFO     | [job] retrieve thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:36,225 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:36,240 | INFO     | [job] job monitor thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:36,244 | INFO     | all data control threads have been joined
[2024-05-16 13:32:47] 2024-05-16 11:32:36,298 | INFO     | [data] copytool_in thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:36,342 | INFO     | [payload] control thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:36,390 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:36,524 | INFO     | [job] validate thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:36,745 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:36,817 | INFO     | [payload] validate_post thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:36,872 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:36,953 | INFO     | [payload] failed_post thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:37,088 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 13:32:47] 2024-05-16 11:32:37,123 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 13:32:47] 2024-05-16 11:32:37,179 | INFO     | [job] control thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:37,249 | INFO     | [data] control thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:38,129 | INFO     | [job] queue monitor thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:38,171 | INFO     | [data] copytool_out thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:41,093 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 13:32:47] 2024-05-16 11:32:41,615 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47956561425472)>', '<ExcThread(monitor, started 47957141366528)>']
[2024-05-16 13:32:47] 2024-05-16 11:32:42,222 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 13:32:47] 2024-05-16 11:32:42,223 | INFO     | [monitor] control thread has ended
[2024-05-16 13:32:47] 2024-05-16 11:32:46,640 | INFO     | all workflow threads have been joined
[2024-05-16 13:32:47] 2024-05-16 11:32:46,641 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 13:32:47] 2024-05-16 11:32:46,641 | INFO     | traces error code: 0
[2024-05-16 13:32:47] 2024-05-16 11:32:46,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 13:32:47] 2024-05-16 11:32:46,711 [wrapper] ==== pilot stdout END ====
[2024-05-16 13:32:47] 2024-05-16 11:32:46,713 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 13:32:47] 2024-05-16 11:32:46,715 [wrapper] pilotpid: 1586359
[2024-05-16 13:32:47] 2024-05-16 11:32:46,717 [wrapper] Pilot exit status: 0
[2024-05-16 13:32:47] 2024-05-16 11:32:46,727 [wrapper] pandaids: 6205833961
[2024-05-16 13:32:47] 2024-05-16 11:32:46,790 [wrapper] cleanup: SIGTERM to supervisor_pilot 2021698 1586360
[2024-05-16 13:32:47] 2024-05-16 11:32:46,792 [wrapper] Test setup, not cleaning
[2024-05-16 13:32:47] 2024-05-16 11:32:46,794 [wrapper] ==== wrapper stdout END ====
[2024-05-16 13:32:47] 2024-05-16 11:32:46,796 [wrapper] ==== wrapper stderr END ====
[2024-05-16 13:32:47] 2024-05-16 11:32:46,800 [wrapper] apfmon messages muted
[2024-05-16 13:32:47]  *** Error codes and diagnostics ***
[2024-05-16 13:32:47]     "exeErrorCode": 0,
[2024-05-16 13:32:47]     "exeErrorDiag": "",
[2024-05-16 13:32:47]     "pilotErrorCode": 0,
[2024-05-16 13:32:47]     "pilotErrorDiag": "",
[2024-05-16 13:32:47]  *** Listing of results directory ***
[2024-05-16 13:32:47] total 841912
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc    467845 May 13 13:45 pilot3.tar.gz
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc      5633 May 13 13:46 queuedata.json
[2024-05-16 13:32:47] -rwx------ 1 boinc boinc     32251 May 13 13:46 runpilot2-wrapper.sh
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc       100 May 16 08:43 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 13:32:47] -rwxr-xr-x 1 boinc boinc      7986 May 16 08:43 run_atlas
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc       105 May 16 08:43 job.xml
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc      6456 May 16 08:43 init_data.xml
[2024-05-16 13:32:47] -rw-r--r-- 2 boinc boinc 602566783 May 16 08:43 EVNT.38776119._000172.pool.root.1
[2024-05-16 13:32:47] drwxrwx--x 2 boinc boinc      4096 May 16 08:43 shared
[2024-05-16 13:32:47] -rw-r--r-- 2 boinc boinc    480016 May 16 08:43 input.tar.gz
[2024-05-16 13:32:47] -rw-r--r-- 2 boinc boinc     17537 May 16 08:43 start_atlas.sh
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc         0 May 16 08:43 boinc_lockfile
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc      2633 May 16 08:43 pandaJob.out
[2024-05-16 13:32:47] -rw------- 1 boinc boinc       424 May 16 08:43 setup.sh.local
[2024-05-16 13:32:47] -rw------- 1 boinc boinc   1010635 May 16 08:43 agis_schedconf.cvmfs.json
[2024-05-16 13:32:47] -rw------- 1 boinc boinc   1324701 May 16 08:43 cric_ddmendpoints.json
[2024-05-16 13:32:47] drwx------ 4 boinc boinc      4096 May 16 08:43 pilot3
[2024-05-16 13:32:47] -rw------- 1 boinc boinc        95 May 16 13:31 pilot_heartbeat.json
[2024-05-16 13:32:47] -rw------- 1 boinc boinc 251493540 May 16 13:31 HITS.38776125._004410.pool.root.1
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc       532 May 16 13:31 boinc_task_state.xml
[2024-05-16 13:32:47] -rw------- 1 boinc boinc      1047 May 16 13:32 memory_monitor_summary.json
[2024-05-16 13:32:47] -rw------- 1 boinc boinc         0 May 16 13:32 agis_ddmendpoints.agis.ALL.json
[2024-05-16 13:32:47] -rw------- 1 boinc boinc    383454 May 16 13:32 log.38776125._004410.job.log.tgz.1
[2024-05-16 13:32:47] -rw------- 1 boinc boinc      7766 May 16 13:32 heartbeat.json
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc      8192 May 16 13:32 boinc_mmap_file
[2024-05-16 13:32:47] -rw------- 1 boinc boinc      4531 May 16 13:32 pilotlog.txt
[2024-05-16 13:32:47] -rw------- 1 boinc boinc   1883201 May 16 13:32 log.38776125._004410.job.log.1
[2024-05-16 13:32:47] -rw------- 1 boinc boinc       357 May 16 13:32 output.list
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc       620 May 16 13:32 runtime_log
[2024-05-16 13:32:47] -rw------- 1 boinc boinc   2283520 May 16 13:32 result.tar.gz
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc     11410 May 16 13:32 runtime_log.err
[2024-05-16 13:32:47] -rw------- 1 boinc boinc       659 May 16 13:32 SZkNDmsJjQ5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmVvGKDmJUycbm.diag
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc        28 May 16 13:32 wrapper_checkpoint.txt
[2024-05-16 13:32:47] -rw-r--r-- 1 boinc boinc     21395 May 16 13:32 stderr.txt
[2024-05-16 13:32:47] HITS file was successfully produced:
[2024-05-16 13:32:47] -rw------- 1 boinc boinc 251493540 May 16 13:31 shared/HITS.pool.root.1
[2024-05-16 13:32:47]  *** Contents of shared directory: ***
[2024-05-16 13:32:47] total 836780
[2024-05-16 13:32:47] -rw-r--r-- 2 boinc boinc 602566783 May 16 08:43 ATLAS.root_0
[2024-05-16 13:32:47] -rw-r--r-- 2 boinc boinc    480016 May 16 08:43 input.tar.gz
[2024-05-16 13:32:47] -rw-r--r-- 2 boinc boinc     17537 May 16 08:43 start_atlas.sh
[2024-05-16 13:32:47] -rw------- 1 boinc boinc 251493540 May 16 13:31 HITS.pool.root.1
[2024-05-16 13:32:47] -rw------- 1 boinc boinc   2283520 May 16 13:32 result.tar.gz
13:32:49 (1581982): run_atlas exited; CPU time 65470.833797
13:32:49 (1581982): called boinc_finish(0)

</stderr_txt>
]]>

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