Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:33:01 (2027612): wrapper (7.7.26015): starting
13:33:01 (2027612): wrapper: running run_atlas (--nthreads 4)
[2024-05-16 13:33:01] Arguments: --nthreads 4
[2024-05-16 13:33:01] Threads: 4
[2024-05-16 13:33:01] Checking for CVMFS
[2024-05-16 13:33:01] No cvmfs_config command found, will try listing directly
[2024-05-16 13:33:01] CVMFS is ok
[2024-05-16 13:33:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-16 13:33:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-16 13:33:01] Further information can be found at the LHC@home message board.
[2024-05-16 13:33:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-16 13:33:01] Checking for apptainer binary...
[2024-05-16 13:33:01] which: no apptainer in ((null))
[2024-05-16 13:33:01] apptainer is not installed, using version from CVMFS
[2024-05-16 13:33:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-16 13:33:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2024-05-16 13:33:02] apptainer works
[2024-05-16 13:33:02] Set ATHENA_PROC_NUMBER=4
[2024-05-16 13:33:02] Set ATHENA_CORE_NUMBER=4
[2024-05-16 13:33:02] Starting ATLAS job with PandaID=6205833955
[2024-05-16 13:33:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 18:11:13]  *** The last 200 lines of the pilot log: ***
[2024-05-16 18:11:13] 2024-05-16 16:10:53,140 | INFO     | model: linear, x: [1715859221.0, 1715859282.0, 1715859343.0, 1715859404.0, 1715859465.0, 1715859526.0, 1715859587.0, 1715859648.0, 1715859709.0, 1715859770.0, 1715
[2024-05-16 18:11:13] 2024-05-16 16:10:53,140 | INFO     | sum of square deviations: 5968658887.0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,141 | INFO     | sum of deviations: 108225516129.0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,141 | INFO     | mean x: 1715867364.5
[2024-05-16 18:11:13] 2024-05-16 16:10:53,141 | INFO     | mean y: 2296569.343283582
[2024-05-16 18:11:13] 2024-05-16 16:10:53,141 | INFO     | -- intersect: -31110325989.1989
[2024-05-16 18:11:13] 2024-05-16 16:10:53,141 | INFO     | intersect: -31110325989.1989
[2024-05-16 18:11:13] 2024-05-16 16:10:53,142 | INFO     | chi2: 3.590209492841836
[2024-05-16 18:11:13] 2024-05-16 16:10:53,142 | INFO     | current chi2=3.590209492841836 (change=-0.027338276481028104 %)
[2024-05-16 18:11:13] 2024-05-16 16:10:53,142 | INFO     | right removable region: 267
[2024-05-16 18:11:13] 2024-05-16 16:10:53,142 | INFO     | model: linear, x: [1715859526.0, 1715859587.0, 1715859648.0, 1715859709.0, 1715859770.0, 1715859831.0, 1715859892.0, 1715859953.0, 1715860014.0, 1715860075.0, 1715
[2024-05-16 18:11:13] 2024-05-16 16:10:53,142 | INFO     | sum of square deviations: 5968658887.0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,143 | INFO     | sum of deviations: 52280901865.00001
[2024-05-16 18:11:13] 2024-05-16 16:10:53,143 | INFO     | mean x: 1715867669.5
[2024-05-16 18:11:13] 2024-05-16 16:10:53,143 | INFO     | mean y: 2323713.052238806
[2024-05-16 18:11:13] 2024-05-16 16:10:53,144 | INFO     | -- intersect: -15027369043.865362
[2024-05-16 18:11:13] 2024-05-16 16:10:53,144 | INFO     | intersect: -15027369043.865362
[2024-05-16 18:11:13] 2024-05-16 16:10:53,144 | INFO     | chi2: 1.436750233860628
[2024-05-16 18:11:13] 2024-05-16 16:10:53,144 | INFO     | current chi2=1.436750233860628 (change=59.97049700087752 %)
[2024-05-16 18:11:13] 2024-05-16 16:10:53,144 | INFO     | model: linear, x: [1715859831.0, 1715859892.0, 1715859953.0, 1715860014.0, 1715860075.0, 1715860136.0, 1715860197.0, 1715860258.0, 1715860319.0, 1715860380.0, 1715
[2024-05-16 18:11:13] 2024-05-16 16:10:53,144 | INFO     | sum of square deviations: 5640782972.0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,145 | INFO     | sum of deviations: 3409542478.999997
[2024-05-16 18:11:13] 2024-05-16 16:10:53,145 | INFO     | mean x: 1715867822.0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,146 | INFO     | mean y: 2346445.2015209123
[2024-05-16 18:11:13] 2024-05-16 16:10:53,146 | INFO     | -- intersect: -1034801102.665209
[2024-05-16 18:11:13] 2024-05-16 16:10:53,146 | INFO     | intersect: -1034801102.665209
[2024-05-16 18:11:13] 2024-05-16 16:10:53,146 | INFO     | chi2: 0.08805083814059936
[2024-05-16 18:11:13] 2024-05-16 16:10:53,146 | INFO     | current chi2=0.08805083814059936 (change=93.8715278365397 %)
[2024-05-16 18:11:13] 2024-05-16 16:10:53,146 | INFO     | model: linear, x: [1715860136.0, 1715860197.0, 1715860258.0, 1715860319.0, 1715860380.0, 1715860441.0, 1715860502.0, 1715860563.0, 1715860624.0, 1715860685.0, 1715
[2024-05-16 18:11:13] 2024-05-16 16:10:53,146 | INFO     | sum of square deviations: 5325139844.5
[2024-05-16 18:11:13] 2024-05-16 16:10:53,147 | INFO     | sum of deviations: -4239925993.5000024
[2024-05-16 18:11:13] 2024-05-16 16:10:53,148 | INFO     | mean x: 1715867974.5
[2024-05-16 18:11:13] 2024-05-16 16:10:53,148 | INFO     | mean y: 2350107.003875969
[2024-05-16 18:11:13] 2024-05-16 16:10:53,148 | INFO     | -- intersect: 1368540186.3143365
[2024-05-16 18:11:13] 2024-05-16 16:10:53,148 | INFO     | intersect: 1368540186.3143365
[2024-05-16 18:11:13] 2024-05-16 16:10:53,148 | INFO     | chi2: 0.02345455496068859
[2024-05-16 18:11:13] 2024-05-16 16:10:53,148 | INFO     | current chi2=0.02345455496068859 (change=73.36248529146717 %)
[2024-05-16 18:11:13] 2024-05-16 16:10:53,148 | INFO     | model: linear, x: [1715860441.0, 1715860502.0, 1715860563.0, 1715860624.0, 1715860685.0, 1715860746.0, 1715860807.0, 1715860868.0, 1715860929.0, 1715860990.0, 1715
[2024-05-16 18:11:13] 2024-05-16 16:10:53,149 | INFO     | sum of square deviations: 5021496942.0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,150 | INFO     | sum of deviations: -3408754115.0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,150 | INFO     | mean x: 1715868127.0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,150 | INFO     | mean y: 2349688.7312252964
[2024-05-16 18:11:13] 2024-05-16 16:10:53,150 | INFO     | -- intersect: 1167136326.3148417
[2024-05-16 18:11:13] 2024-05-16 16:10:53,150 | INFO     | intersect: 1167136326.3148417
[2024-05-16 18:11:13] 2024-05-16 16:10:53,150 | INFO     | chi2: 0.023234200883934828
[2024-05-16 18:11:13] 2024-05-16 16:10:53,150 | INFO     | current chi2=0.023234200883934828 (change=0.9394937449168842 %)
[2024-05-16 18:11:13] 2024-05-16 16:10:53,150 | INFO     | left removable region: 40
[2024-05-16 18:11:13] 2024-05-16 16:10:53,150 | INFO     | model: linear, x: [1715861661.0, 1715861722.0, 1715861783.0, 1715861844.0, 1715861905.0, 1715861966.0, 1715862027.0, 1715862088.0, 1715862149.0, 1715862210.0, 1715
[2024-05-16 18:11:13] 2024-05-16 16:10:53,151 | INFO     | sum of square deviations: 3627000098.0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,152 | INFO     | sum of deviations: 5321600776.999998
[2024-05-16 18:11:13] 2024-05-16 16:10:53,152 | INFO     | mean x: 1715868554.0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,152 | INFO     | mean y: 2344283.154185022
[2024-05-16 18:11:13] 2024-05-16 16:10:53,152 | INFO     | -- intersect: -2515209393.017859
[2024-05-16 18:11:13] 2024-05-16 16:10:53,152 | INFO     | intersect: -2515209393.017859
[2024-05-16 18:11:13] 2024-05-16 16:10:53,152 | INFO     | chi2: 0.007987305917258417
[2024-05-16 18:11:13] 2024-05-16 16:10:53,152 | INFO     | -- intersect: -2515209393.017859
[2024-05-16 18:11:13] 2024-05-16 16:10:53,152 | INFO     | current memory leak: 1.47 B/s (using 227 data points, chi2=0.01)
[2024-05-16 18:11:13] 2024-05-16 16:10:53,153 | INFO     | ..............................
[2024-05-16 18:11:13] 2024-05-16 16:10:53,153 | INFO     | . Timing measurements:
[2024-05-16 18:11:13] 2024-05-16 16:10:53,153 | INFO     | . get job = 0 s
[2024-05-16 18:11:13] 2024-05-16 16:10:53,153 | INFO     | . initial setup = 1 s
[2024-05-16 18:11:13] 2024-05-16 16:10:53,153 | INFO     | . payload setup = 5 s
[2024-05-16 18:11:13] 2024-05-16 16:10:53,153 | INFO     | . stage-in = 0 s
[2024-05-16 18:11:13] 2024-05-16 16:10:53,153 | INFO     | . payload execution = 16626 s
[2024-05-16 18:11:13] 2024-05-16 16:10:53,153 | INFO     | . stage-out = 0 s
[2024-05-16 18:11:13] 2024-05-16 16:10:53,153 | INFO     | . log creation = 0 s
[2024-05-16 18:11:13] 2024-05-16 16:10:53,153 | INFO     | ..............................
[2024-05-16 18:11:13] 2024-05-16 16:10:53,216 | INFO     | 
[2024-05-16 18:11:13] 2024-05-16 16:10:53,216 | INFO     | job summary report
[2024-05-16 18:11:13] 2024-05-16 16:10:53,216 | INFO     | --------------------------------------------------
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | PanDA job id: 6205833955
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | task id: 38776125
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | errors: (none)
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | pilot state: finished 
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | transexitcode: 0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | exeerrorcode: 0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | exeerrordiag: 
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | exitcode: 0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | exitmsg: OK
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | cpuconsumptiontime: 63343 s
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | nevents: 400
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | neventsw: 0
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | pid: 2040884
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | pgrp: 2040884
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | corecount: 4
[2024-05-16 18:11:13] 2024-05-16 16:10:53,217 | INFO     | event service: False
[2024-05-16 18:11:13] 2024-05-16 16:10:53,218 | INFO     | sizes: {0: 2392091, 1: 2392233, 5: 2392439, 11: 2392495, 16636: 2424297, 16637: 2433279, 16640: 2433463, 16643: 2433633}
[2024-05-16 18:11:13] 2024-05-16 16:10:53,218 | INFO     | --------------------------------------------------
[2024-05-16 18:11:13] 2024-05-16 16:10:53,218 | INFO     | 
[2024-05-16 18:11:13] 2024-05-16 16:10:53,218 | INFO     | executing command: ls -lF /scratch/boinc/var/slot20/slots/1
[2024-05-16 18:11:13] 2024-05-16 16:10:53,235 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,235 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,235 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,235 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,235 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,235 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,235 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,235 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,235 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,235 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | job 6205833955 has completed (purged errors)
[2024-05-16 18:11:13] 2024-05-16 16:10:53,236 | INFO     | overall cleanup function is called
[2024-05-16 18:11:13] 2024-05-16 16:10:54,242 | INFO     | --- collectZombieJob: --- 10, [2040884]
[2024-05-16 18:11:13] 2024-05-16 16:10:54,243 | INFO     | zombie collector waiting for pid 2040884
[2024-05-16 18:11:13] 2024-05-16 16:10:54,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 18:11:13] 2024-05-16 16:10:55,248 | INFO     | collected zombie processes
[2024-05-16 18:11:13] 2024-05-16 16:10:55,248 | INFO     | will now attempt to kill all subprocesses of pid=2040884
[2024-05-16 18:11:13] 2024-05-16 16:10:55,374 | INFO     | process IDs to be killed: [2040884] (in reverse order)
[2024-05-16 18:11:13] 2024-05-16 16:10:55,455 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 18:11:13] 2024-05-16 16:10:55,455 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 18:11:13] 2024-05-16 16:10:55,460 | INFO     | did not find any defunct processes belonging to 2040884
[2024-05-16 18:11:13] 2024-05-16 16:10:55,463 | INFO     | did not find any defunct processes belonging to 2040884
[2024-05-16 18:11:13] 2024-05-16 16:10:55,463 | INFO     | ready for new job
[2024-05-16 18:11:13] 2024-05-16 16:10:55,463 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 18:11:13] 2024-05-16 16:10:55,465 | INFO     | *************************************
[2024-05-16 18:11:13] 2024-05-16 16:10:55,465 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 18:11:13] 2024-05-16 16:10:55,465 | INFO     | *************************************
[2024-05-16 18:11:13] 2024-05-16 16:10:55,465 | INFO     | 
[2024-05-16 18:11:13] 2024-05-16 16:10:55,467 | INFO     | architecture information:
[2024-05-16 18:11:13] 2024-05-16 16:10:55,467 | INFO     | executing command: cat /etc/os-release
[2024-05-16 18:11:13] 2024-05-16 16:10:55,477 | INFO     | cat /etc/os-release:
[2024-05-16 18:11:13] NAME="CentOS Linux"
[2024-05-16 18:11:13] VERSION="7 (Core)"
[2024-05-16 18:11:13] ID="centos"
[2024-05-16 18:11:13] ID_LIKE="rhel fedora"
[2024-05-16 18:11:13] VERSION_ID="7"
[2024-05-16 18:11:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 18:11:13] ANSI_COLOR="0;31"
[2024-05-16 18:11:13] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 18:11:13] HOME_URL="https://www.centos.org/"
[2024-05-16 18:11:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 18:11:13] 
[2024-05-16 18:11:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 18:11:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 18:11:13] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 18:11:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 18:11:13] 
[2024-05-16 18:11:13] 2024-05-16 16:10:55,478 | INFO     | *************************************
[2024-05-16 18:11:13] 2024-05-16 16:10:55,981 | INFO     | executing command: df -mP /scratch/boinc/var/slot20/slots/1
[2024-05-16 18:11:13] 2024-05-16 16:10:55,996 | INFO     | sufficient remaining disk space (1605428576256 B)
[2024-05-16 18:11:13] 2024-05-16 16:10:55,996 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 18:11:13] 2024-05-16 16:10:55,996 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 18:11:13] 2024-05-16 16:10:55,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 18:11:13] 2024-05-16 16:10:56,305 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 18:11:13] 2024-05-16 16:10:56,305 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 18:11:13] 2024-05-16 16:10:56,305 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 18:11:13] 2024-05-16 16:10:56,337 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-16 18:11:13] 2024-05-16 16:10:56,337 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-16 18:11:13] 2024-05-16 16:10:56,338 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 18:11:13] 2024-05-16 16:10:56,338 | INFO     | will abort loop
[2024-05-16 18:11:13] 2024-05-16 16:10:56,500 | INFO     | all data control threads have been joined
[2024-05-16 18:11:13] 2024-05-16 16:10:57,002 | INFO     | all payload control threads have been joined
[2024-05-16 18:11:13] 2024-05-16 16:10:57,002 | INFO     | [job] retrieve thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:57,114 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 18:11:13] 2024-05-16 16:10:57,175 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:57,239 | INFO     | [payload] failed_post thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:57,343 | INFO     | [job] job monitor thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:57,396 | INFO     | all job control threads have been joined
[2024-05-16 18:11:13] 2024-05-16 16:10:57,506 | INFO     | [data] control thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:57,880 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:57,965 | INFO     | [payload] validate_post thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:58,007 | INFO     | [payload] control thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:58,045 | INFO     | [data] copytool_in thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:58,051 | INFO     | [job] validate thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:58,225 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 18:11:13] 2024-05-16 16:10:58,276 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:58,401 | INFO     | [job] control thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:59,119 | INFO     | [data] copytool_out thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:10:59,230 | INFO     | [job] queue monitor thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:11:00,003 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:11:06,847 | INFO     | job.realtimelogging is not enabled
[2024-05-16 18:11:13] 2024-05-16 16:11:07,850 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 18:11:13] 2024-05-16 16:11:07,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47812666577984)>', '<ExcThread(monitor, started 47812835727104)>']
[2024-05-16 18:11:13] 2024-05-16 16:11:08,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 18:11:13] 2024-05-16 16:11:08,365 | INFO     | [monitor] control thread has ended
[2024-05-16 18:11:13] 2024-05-16 16:11:13,011 | INFO     | all workflow threads have been joined
[2024-05-16 18:11:13] 2024-05-16 16:11:13,012 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 18:11:13] 2024-05-16 16:11:13,012 | INFO     | traces error code: 0
[2024-05-16 18:11:13] 2024-05-16 16:11:13,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 18:11:13] 2024-05-16 16:11:13,087 [wrapper] ==== pilot stdout END ====
[2024-05-16 18:11:13] 2024-05-16 16:11:13,090 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 18:11:13] 2024-05-16 16:11:13,092 [wrapper] pilotpid: 2031905
[2024-05-16 18:11:13] 2024-05-16 16:11:13,095 [wrapper] Pilot exit status: 0
[2024-05-16 18:11:13] 2024-05-16 16:11:13,102 [wrapper] pandaids: 6205833955
[2024-05-16 18:11:13] 2024-05-16 16:11:13,143 [wrapper] cleanup: SIGTERM to supervisor_pilot 2441797 2031906
[2024-05-16 18:11:13] 2024-05-16 16:11:13,145 [wrapper] Test setup, not cleaning
[2024-05-16 18:11:13] 2024-05-16 16:11:13,147 [wrapper] ==== wrapper stdout END ====
[2024-05-16 18:11:13] 2024-05-16 16:11:13,149 [wrapper] ==== wrapper stderr END ====
[2024-05-16 18:11:13] 2024-05-16 16:11:13,153 [wrapper] apfmon messages muted
[2024-05-16 18:11:13]  *** Error codes and diagnostics ***
[2024-05-16 18:11:13]     "exeErrorCode": 0,
[2024-05-16 18:11:13]     "exeErrorDiag": "",
[2024-05-16 18:11:13]     "pilotErrorCode": 0,
[2024-05-16 18:11:13]     "pilotErrorDiag": "",
[2024-05-16 18:11:13]  *** Listing of results directory ***
[2024-05-16 18:11:13] total 836680
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc    467845 May 13 13:45 pilot3.tar.gz
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc      5633 May 13 13:46 queuedata.json
[2024-05-16 18:11:13] -rwx------ 1 boinc boinc     32251 May 13 13:46 runpilot2-wrapper.sh
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc       100 May 16 13:32 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 18:11:13] -rwxr-xr-x 1 boinc boinc      7986 May 16 13:32 run_atlas
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc       105 May 16 13:32 job.xml
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc      6456 May 16 13:33 init_data.xml
[2024-05-16 18:11:13] -rw-r--r-- 2 boinc boinc 602566783 May 16 13:33 EVNT.38776119._000172.pool.root.1
[2024-05-16 18:11:13] drwxrwx--x 2 boinc boinc      4096 May 16 13:33 shared
[2024-05-16 18:11:13] -rw-r--r-- 2 boinc boinc    480009 May 16 13:33 input.tar.gz
[2024-05-16 18:11:13] -rw-r--r-- 2 boinc boinc     17537 May 16 13:33 start_atlas.sh
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc         0 May 16 13:33 boinc_lockfile
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc      2633 May 16 13:33 pandaJob.out
[2024-05-16 18:11:13] -rw------- 1 boinc boinc       424 May 16 13:33 setup.sh.local
[2024-05-16 18:11:13] -rw------- 1 boinc boinc   1010319 May 16 13:33 agis_schedconf.cvmfs.json
[2024-05-16 18:11:13] -rw------- 1 boinc boinc   1324701 May 16 13:33 cric_ddmendpoints.json
[2024-05-16 18:11:13] drwx------ 4 boinc boinc      4096 May 16 13:33 pilot3
[2024-05-16 18:11:13] -rw------- 1 boinc boinc        95 May 16 18:10 pilot_heartbeat.json
[2024-05-16 18:11:13] -rw------- 1 boinc boinc 246253167 May 16 18:10 HITS.38776125._004404.pool.root.1
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc       532 May 16 18:10 boinc_task_state.xml
[2024-05-16 18:11:13] -rw------- 1 boinc boinc      1047 May 16 18:10 memory_monitor_summary.json
[2024-05-16 18:11:13] -rw------- 1 boinc boinc         0 May 16 18:10 agis_ddmendpoints.agis.ALL.json
[2024-05-16 18:11:13] -rw------- 1 boinc boinc    372956 May 16 18:10 log.38776125._004404.job.log.tgz.1
[2024-05-16 18:11:13] -rw------- 1 boinc boinc      7769 May 16 18:10 heartbeat.json
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc      8192 May 16 18:11 boinc_mmap_file
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc        28 May 16 18:11 wrapper_checkpoint.txt
[2024-05-16 18:11:13] -rw------- 1 boinc boinc      4480 May 16 18:11 pilotlog.txt
[2024-05-16 18:11:13] -rw------- 1 boinc boinc   1831462 May 16 18:11 log.38776125._004404.job.log.1
[2024-05-16 18:11:13] -rw------- 1 boinc boinc       357 May 16 18:11 output.list
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc       620 May 16 18:11 runtime_log
[2024-05-16 18:11:13] -rw------- 1 boinc boinc   2222080 May 16 18:11 result.tar.gz
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc     11410 May 16 18:11 runtime_log.err
[2024-05-16 18:11:13] -rw------- 1 boinc boinc       659 May 16 18:11 PrYNDmsJjQ5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmPvGKDmx7ObJm.diag
[2024-05-16 18:11:13] -rw-r--r-- 1 boinc boinc     21367 May 16 18:11 stderr.txt
[2024-05-16 18:11:13] HITS file was successfully produced:
[2024-05-16 18:11:13] -rw------- 1 boinc boinc 246253167 May 16 18:10 shared/HITS.pool.root.1
[2024-05-16 18:11:13]  *** Contents of shared directory: ***
[2024-05-16 18:11:13] total 831604
[2024-05-16 18:11:13] -rw-r--r-- 2 boinc boinc 602566783 May 16 13:33 ATLAS.root_0
[2024-05-16 18:11:13] -rw-r--r-- 2 boinc boinc    480009 May 16 13:33 input.tar.gz
[2024-05-16 18:11:13] -rw-r--r-- 2 boinc boinc     17537 May 16 13:33 start_atlas.sh
[2024-05-16 18:11:13] -rw------- 1 boinc boinc 246253167 May 16 18:10 HITS.pool.root.1
[2024-05-16 18:11:13] -rw------- 1 boinc boinc   2222080 May 16 18:11 result.tar.gz
18:11:15 (2027612): run_atlas exited; CPU time 63080.641155
18:11:15 (2027612): called boinc_finish(0)

</stderr_txt>
]]>

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