Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:12:42 (219572): wrapper (7.7.26015): starting
16:12:42 (219572): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 16:12:42] Arguments: --nthreads 4
[2024-05-15 16:12:42] Threads: 4
[2024-05-15 16:12:42] Checking for CVMFS
[2024-05-15 16:12:42] No cvmfs_config command found, will try listing directly
[2024-05-15 16:12:42] CVMFS is ok
[2024-05-15 16:12:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 16:12:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 16:12:42] Further information can be found at the LHC@home message board.
[2024-05-15 16:12:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 16:12:42] Checking for apptainer binary...
[2024-05-15 16:12:42] which: no apptainer in ((null))
[2024-05-15 16:12:42] apptainer is not installed, using version from CVMFS
[2024-05-15 16:12:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 16:12:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2024-05-15 16:12:43] apptainer works
[2024-05-15 16:12:43] Set ATHENA_PROC_NUMBER=4
[2024-05-15 16:12:43] Set ATHENA_CORE_NUMBER=4
[2024-05-15 16:12:43] Starting ATLAS job with PandaID=6205833384
[2024-05-15 16:12:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 18:57:39]  *** The last 200 lines of the pilot log: ***
[2024-05-15 18:57:39] 2024-05-15 16:57:16,752 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-15 18:57:39] 2024-05-15 16:57:16,752 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-15 18:57:39] 2024-05-15 16:57:16,754 | INFO     | fitting pss+swap vs Time
[2024-05-15 18:57:39] 2024-05-15 16:57:16,755 | INFO     | model: linear, x: [1715782402.0, 1715782463.0, 1715782524.0, 1715782585.0, 1715782646.0, 1715782707.0, 1715782768.0, 1715782829.0, 1715782890.0, 1715782951.0, 1715
[2024-05-15 18:57:39] 2024-05-15 16:57:16,755 | INFO     | sum of square deviations: 1318277740.5
[2024-05-15 18:57:39] 2024-05-15 16:57:16,756 | INFO     | sum of deviations: 62783797959.49999
[2024-05-15 18:57:39] 2024-05-15 16:57:16,756 | INFO     | mean x: 1715787312.5
[2024-05-15 18:57:39] 2024-05-15 16:57:16,756 | INFO     | mean y: 2236846.8333333335
[2024-05-15 18:57:39] 2024-05-15 16:57:16,756 | INFO     | -- intersect: -81713201910.87167
[2024-05-15 18:57:39] 2024-05-15 16:57:16,756 | INFO     | intersect: -81713201910.87167
[2024-05-15 18:57:39] 2024-05-15 16:57:16,756 | INFO     | chi2: 4.9412498487871455
[2024-05-15 18:57:39] 2024-05-15 16:57:16,756 | INFO     | model: linear, x: [1715782402.0, 1715782463.0, 1715782524.0, 1715782585.0, 1715782646.0, 1715782707.0, 1715782768.0, 1715782829.0, 1715782890.0, 1715782951.0, 1715
[2024-05-15 18:57:39] 2024-05-15 16:57:16,756 | INFO     | sum of square deviations: 1199940638.0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,757 | INFO     | sum of deviations: 70773713227.0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,757 | INFO     | mean x: 1715787160.0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,757 | INFO     | mean y: 2246811.2484076433
[2024-05-15 18:57:39] 2024-05-15 16:57:16,757 | INFO     | -- intersect: -101196616344.85445
[2024-05-15 18:57:39] 2024-05-15 16:57:16,757 | INFO     | intersect: -101196616344.85445
[2024-05-15 18:57:39] 2024-05-15 16:57:16,758 | INFO     | chi2: 4.141735163190511
[2024-05-15 18:57:39] 2024-05-15 16:57:16,758 | INFO     | current chi2=4.141735163190511 (change=16.180414066552004 %)
[2024-05-15 18:57:39] 2024-05-15 16:57:16,758 | INFO     | right removable region: 156
[2024-05-15 18:57:39] 2024-05-15 16:57:16,758 | INFO     | model: linear, x: [1715782707.0, 1715782768.0, 1715782829.0, 1715782890.0, 1715782951.0, 1715783012.0, 1715783073.0, 1715783134.0, 1715783195.0, 1715783256.0, 1715
[2024-05-15 18:57:39] 2024-05-15 16:57:16,758 | INFO     | sum of square deviations: 1199940638.0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,759 | INFO     | sum of deviations: 26741358059.0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,759 | INFO     | mean x: 1715787465.0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,759 | INFO     | mean y: 2283157.98089172
[2024-05-15 18:57:39] 2024-05-15 16:57:16,759 | INFO     | -- intersect: -38235014172.98002
[2024-05-15 18:57:39] 2024-05-15 16:57:16,759 | INFO     | intersect: -38235014172.98002
[2024-05-15 18:57:39] 2024-05-15 16:57:16,759 | INFO     | chi2: 2.5208703241250854
[2024-05-15 18:57:39] 2024-05-15 16:57:16,759 | INFO     | current chi2=2.5208703241250854 (change=48.98314391562601 %)
[2024-05-15 18:57:39] 2024-05-15 16:57:16,759 | INFO     | model: linear, x: [1715783012.0, 1715783073.0, 1715783134.0, 1715783195.0, 1715783256.0, 1715783317.0, 1715783378.0, 1715783439.0, 1715783500.0, 1715783561.0, 1715
[2024-05-15 18:57:39] 2024-05-15 16:57:16,759 | INFO     | sum of square deviations: 1088905998.0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,760 | INFO     | sum of deviations: -4202175380.999999
[2024-05-15 18:57:39] 2024-05-15 16:57:16,760 | INFO     | mean x: 1715787617.5
[2024-05-15 18:57:39] 2024-05-15 16:57:16,760 | INFO     | mean y: 2325667.3684210526
[2024-05-15 18:57:39] 2024-05-15 16:57:16,760 | INFO     | -- intersect: 6623687381.350956
[2024-05-15 18:57:39] 2024-05-15 16:57:16,760 | INFO     | intersect: 6623687381.350956
[2024-05-15 18:57:39] 2024-05-15 16:57:16,761 | INFO     | chi2: 0.8925392423205254
[2024-05-15 18:57:39] 2024-05-15 16:57:16,761 | INFO     | current chi2=0.8925392423205254 (change=64.59400415091571 %)
[2024-05-15 18:57:39] 2024-05-15 16:57:16,761 | INFO     | model: linear, x: [1715783317.0, 1715783378.0, 1715783439.0, 1715783500.0, 1715783561.0, 1715783622.0, 1715783683.0, 1715783744.0, 1715783805.0, 1715783866.0, 1715
[2024-05-15 18:57:39] 2024-05-15 16:57:16,761 | INFO     | sum of square deviations: 984941258.0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,762 | INFO     | sum of deviations: -7725101183.0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,762 | INFO     | mean x: 1715787770.0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,762 | INFO     | mean y: 2330736.170068027
[2024-05-15 18:57:39] 2024-05-15 16:57:16,762 | INFO     | -- intersect: 13459614634.21542
[2024-05-15 18:57:39] 2024-05-15 16:57:16,762 | INFO     | intersect: 13459614634.21542
[2024-05-15 18:57:39] 2024-05-15 16:57:16,762 | INFO     | chi2: 0.8419391253746692
[2024-05-15 18:57:39] 2024-05-15 16:57:16,762 | INFO     | current chi2=0.8419391253746692 (change=5.669231619922979 %)
[2024-05-15 18:57:39] 2024-05-15 16:57:16,762 | INFO     | left removable region: 30
[2024-05-15 18:57:39] 2024-05-15 16:57:16,762 | INFO     | model: linear, x: [1715784232.0, 1715784293.0, 1715784354.0, 1715784415.0, 1715784476.0, 1715784537.0, 1715784598.0, 1715784659.0, 1715784720.0, 1715784781.0, 1715
[2024-05-15 18:57:39] 2024-05-15 16:57:16,762 | INFO     | sum of square deviations: 620244187.5
[2024-05-15 18:57:39] 2024-05-15 16:57:16,763 | INFO     | sum of deviations: 661522887.5000001
[2024-05-15 18:57:39] 2024-05-15 16:57:16,763 | INFO     | mean x: 1715788044.5
[2024-05-15 18:57:39] 2024-05-15 16:57:16,763 | INFO     | mean y: 2346739.3412698414
[2024-05-15 18:57:39] 2024-05-15 16:57:16,763 | INFO     | -- intersect: -1827631008.7946107
[2024-05-15 18:57:39] 2024-05-15 16:57:16,763 | INFO     | intersect: -1827631008.7946107
[2024-05-15 18:57:39] 2024-05-15 16:57:16,763 | INFO     | chi2: 0.00023621475130088684
[2024-05-15 18:57:39] 2024-05-15 16:57:16,764 | INFO     | -- intersect: -1827631008.7946107
[2024-05-15 18:57:39] 2024-05-15 16:57:16,764 | INFO     | current memory leak: 1.07 B/s (using 126 data points, chi2=0.00)
[2024-05-15 18:57:39] 2024-05-15 16:57:16,764 | INFO     | ..............................
[2024-05-15 18:57:39] 2024-05-15 16:57:16,764 | INFO     | . Timing measurements:
[2024-05-15 18:57:39] 2024-05-15 16:57:16,764 | INFO     | . get job = 0 s
[2024-05-15 18:57:39] 2024-05-15 16:57:16,764 | INFO     | . initial setup = 1 s
[2024-05-15 18:57:39] 2024-05-15 16:57:16,764 | INFO     | . payload setup = 6 s
[2024-05-15 18:57:39] 2024-05-15 16:57:16,764 | INFO     | . stage-in = 0 s
[2024-05-15 18:57:39] 2024-05-15 16:57:16,764 | INFO     | . payload execution = 9826 s
[2024-05-15 18:57:39] 2024-05-15 16:57:16,764 | INFO     | . stage-out = 0 s
[2024-05-15 18:57:39] 2024-05-15 16:57:16,765 | INFO     | . log creation = 0 s
[2024-05-15 18:57:39] 2024-05-15 16:57:16,765 | INFO     | ..............................
[2024-05-15 18:57:39] 2024-05-15 16:57:16,846 | INFO     | 
[2024-05-15 18:57:39] 2024-05-15 16:57:16,846 | INFO     | job summary report
[2024-05-15 18:57:39] 2024-05-15 16:57:16,846 | INFO     | --------------------------------------------------
[2024-05-15 18:57:39] 2024-05-15 16:57:16,846 | INFO     | PanDA job id: 6205833384
[2024-05-15 18:57:39] 2024-05-15 16:57:16,846 | INFO     | task id: 38776125
[2024-05-15 18:57:39] 2024-05-15 16:57:16,846 | INFO     | errors: (none)
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | pilot state: finished 
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | transexitcode: 0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | exeerrorcode: 0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | exeerrordiag: 
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | exitcode: 0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | exitmsg: OK
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | cpuconsumptiontime: 36578 s
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | nevents: 400
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | neventsw: 0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | pid: 234348
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | pgrp: 234348
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | corecount: 4
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | event service: False
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | sizes: {0: 2396654, 5: 2396860, 11: 2396916, 9837: 2434405, 9840: 2434405, 9847: 2434575}
[2024-05-15 18:57:39] 2024-05-15 16:57:16,847 | INFO     | --------------------------------------------------
[2024-05-15 18:57:39] 2024-05-15 16:57:16,848 | INFO     | 
[2024-05-15 18:57:39] 2024-05-15 16:57:16,848 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/0
[2024-05-15 18:57:39] 2024-05-15 16:57:16,884 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,884 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,884 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,884 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 18:57:39] 2024-05-15 16:57:16,885 | INFO     | job 6205833384 has completed (purged errors)
[2024-05-15 18:57:39] 2024-05-15 16:57:16,886 | INFO     | overall cleanup function is called
[2024-05-15 18:57:39] 2024-05-15 16:57:17,893 | INFO     | --- collectZombieJob: --- 10, [234348]
[2024-05-15 18:57:39] 2024-05-15 16:57:17,893 | INFO     | zombie collector waiting for pid 234348
[2024-05-15 18:57:39] 2024-05-15 16:57:17,893 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 18:57:39] 2024-05-15 16:57:18,898 | INFO     | collected zombie processes
[2024-05-15 18:57:39] 2024-05-15 16:57:18,898 | INFO     | will now attempt to kill all subprocesses of pid=234348
[2024-05-15 18:57:39] 2024-05-15 16:57:19,090 | INFO     | process IDs to be killed: [234348] (in reverse order)
[2024-05-15 18:57:39] 2024-05-15 16:57:19,241 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 18:57:39] 2024-05-15 16:57:19,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 18:57:39] 2024-05-15 16:57:19,254 | INFO     | did not find any defunct processes belonging to 234348
[2024-05-15 18:57:39] 2024-05-15 16:57:19,263 | INFO     | did not find any defunct processes belonging to 234348
[2024-05-15 18:57:39] 2024-05-15 16:57:19,264 | INFO     | ready for new job
[2024-05-15 18:57:39] 2024-05-15 16:57:19,264 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 18:57:39] 2024-05-15 16:57:19,265 | INFO     | *************************************
[2024-05-15 18:57:39] 2024-05-15 16:57:19,265 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 18:57:39] 2024-05-15 16:57:19,265 | INFO     | *************************************
[2024-05-15 18:57:39] 2024-05-15 16:57:19,265 | INFO     | 
[2024-05-15 18:57:39] 2024-05-15 16:57:19,269 | INFO     | architecture information:
[2024-05-15 18:57:39] 2024-05-15 16:57:19,270 | INFO     | executing command: cat /etc/os-release
[2024-05-15 18:57:39] 2024-05-15 16:57:19,284 | INFO     | cat /etc/os-release:
[2024-05-15 18:57:39] NAME="CentOS Linux"
[2024-05-15 18:57:39] VERSION="7 (Core)"
[2024-05-15 18:57:39] ID="centos"
[2024-05-15 18:57:39] ID_LIKE="rhel fedora"
[2024-05-15 18:57:39] VERSION_ID="7"
[2024-05-15 18:57:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 18:57:39] ANSI_COLOR="0;31"
[2024-05-15 18:57:39] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 18:57:39] HOME_URL="https://www.centos.org/"
[2024-05-15 18:57:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 18:57:39] 
[2024-05-15 18:57:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 18:57:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 18:57:39] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 18:57:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 18:57:39] 
[2024-05-15 18:57:39] 2024-05-15 16:57:19,284 | INFO     | *************************************
[2024-05-15 18:57:39] 2024-05-15 16:57:19,786 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/0
[2024-05-15 18:57:39] 2024-05-15 16:57:19,805 | INFO     | sufficient remaining disk space (2991694282752 B)
[2024-05-15 18:57:39] 2024-05-15 16:57:19,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 18:57:39] 2024-05-15 16:57:19,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 18:57:39] 2024-05-15 16:57:19,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 18:57:39] 2024-05-15 16:57:19,807 | INFO     | aborting loop
[2024-05-15 18:57:39] 2024-05-15 16:57:19,811 | INFO     | all job control threads have been joined
[2024-05-15 18:57:39] 2024-05-15 16:57:20,108 | INFO     | all payload control threads have been joined
[2024-05-15 18:57:39] 2024-05-15 16:57:20,282 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 18:57:39] 2024-05-15 16:57:20,374 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 18:57:39] 2024-05-15 16:57:20,375 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 18:57:39] 2024-05-15 16:57:20,375 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 18:57:39] 2024-05-15 16:57:20,390 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 18:57:39] 2024-05-15 16:57:20,401 | INFO     | all data control threads have been joined
[2024-05-15 18:57:39] 2024-05-15 16:57:20,811 | INFO     | [job] retrieve thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:20,812 | INFO     | [job] job monitor thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:20,816 | INFO     | [job] control thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:21,113 | INFO     | [payload] control thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:21,173 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:21,406 | INFO     | [data] control thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:21,480 | INFO     | [payload] failed_post thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:21,490 | INFO     | [job] validate thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:21,856 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 18:57:39] 2024-05-15 16:57:21,983 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:22,129 | INFO     | [data] copytool_in thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:22,170 | INFO     | [payload] validate_post thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:22,228 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:22,395 | INFO     | [data] copytool_out thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:22,862 | INFO     | [job] queue monitor thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:24,287 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:30,534 | INFO     | job.realtimelogging is not enabled
[2024-05-15 18:57:39] 2024-05-15 16:57:31,539 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 18:57:39] 2024-05-15 16:57:33,219 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47476177613888)>', '<ExcThread(monitor, started 47476351227648)>']
[2024-05-15 18:57:39] 2024-05-15 16:57:33,439 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 18:57:39] 2024-05-15 16:57:33,440 | INFO     | [monitor] control thread has ended
[2024-05-15 18:57:39] 2024-05-15 16:57:38,244 | INFO     | all workflow threads have been joined
[2024-05-15 18:57:39] 2024-05-15 16:57:38,244 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 18:57:39] 2024-05-15 16:57:38,245 | INFO     | traces error code: 0
[2024-05-15 18:57:39] 2024-05-15 16:57:38,245 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 18:57:39] 2024-05-15 16:57:38,316 [wrapper] ==== pilot stdout END ====
[2024-05-15 18:57:39] 2024-05-15 16:57:38,318 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 18:57:39] 2024-05-15 16:57:38,320 [wrapper] pilotpid: 224269
[2024-05-15 18:57:39] 2024-05-15 16:57:38,322 [wrapper] Pilot exit status: 0
[2024-05-15 18:57:39] 2024-05-15 16:57:38,348 [wrapper] pandaids: 6205833384
[2024-05-15 18:57:39] 2024-05-15 16:57:38,461 [wrapper] cleanup: SIGTERM to supervisor_pilot  992403 224270
[2024-05-15 18:57:39] 2024-05-15 16:57:38,463 [wrapper] Test setup, not cleaning
[2024-05-15 18:57:39] 2024-05-15 16:57:38,465 [wrapper] ==== wrapper stdout END ====
[2024-05-15 18:57:39] 2024-05-15 16:57:38,467 [wrapper] ==== wrapper stderr END ====
[2024-05-15 18:57:39] 2024-05-15 16:57:38,471 [wrapper] apfmon messages muted
[2024-05-15 18:57:39]  *** Error codes and diagnostics ***
[2024-05-15 18:57:39]     "exeErrorCode": 0,
[2024-05-15 18:57:39]     "exeErrorDiag": "",
[2024-05-15 18:57:39]     "pilotErrorCode": 0,
[2024-05-15 18:57:39]     "pilotErrorDiag": "",
[2024-05-15 18:57:39]  *** Listing of results directory ***
[2024-05-15 18:57:39] total 829524
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc    467845 May 13 13:11 pilot3.tar.gz
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc      5633 May 13 13:14 queuedata.json
[2024-05-15 18:57:39] -rwx------ 1 boinc boinc     32251 May 13 13:14 runpilot2-wrapper.sh
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc       100 May 15 16:12 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 18:57:39] -rwxr-xr-x 1 boinc boinc      7986 May 15 16:12 run_atlas
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc       105 May 15 16:12 job.xml
[2024-05-15 18:57:39] drwxrwx--x 2 boinc boinc      4096 May 15 16:12 shared
[2024-05-15 18:57:39] -rw-r--r-- 2 boinc boinc    480004 May 15 16:12 input.tar.gz
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc      6644 May 15 16:12 init_data.xml
[2024-05-15 18:57:39] -rw-r--r-- 2 boinc boinc 600618267 May 15 16:12 EVNT.38776119._000113.pool.root.1
[2024-05-15 18:57:39] -rw-r--r-- 2 boinc boinc     17537 May 15 16:12 start_atlas.sh
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc         0 May 15 16:12 boinc_lockfile
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc      2633 May 15 16:12 pandaJob.out
[2024-05-15 18:57:39] -rw------- 1 boinc boinc       424 May 15 16:12 setup.sh.local
[2024-05-15 18:57:39] -rw------- 1 boinc boinc   1010550 May 15 16:12 agis_schedconf.cvmfs.json
[2024-05-15 18:57:39] -rw------- 1 boinc boinc         0 May 15 16:12 agis_ddmendpoints.agis.ALL.json
[2024-05-15 18:57:39] -rw------- 1 boinc boinc   1325758 May 15 16:12 cric_ddmendpoints.json
[2024-05-15 18:57:39] drwx------ 4 boinc boinc      4096 May 15 16:12 pilot3
[2024-05-15 18:57:39] -rw------- 1 boinc boinc        95 May 15 18:56 pilot_heartbeat.json
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc       531 May 15 18:56 boinc_task_state.xml
[2024-05-15 18:57:39] -rw------- 1 boinc boinc 242599459 May 15 18:56 HITS.38776125._003916.pool.root.1
[2024-05-15 18:57:39] -rw------- 1 boinc boinc      1050 May 15 18:57 memory_monitor_summary.json
[2024-05-15 18:57:39] -rw------- 1 boinc boinc    314043 May 15 18:57 log.38776125._003916.job.log.tgz.1
[2024-05-15 18:57:39] -rw------- 1 boinc boinc      7731 May 15 18:57 heartbeat.json
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc        27 May 15 18:57 wrapper_checkpoint.txt
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc      8192 May 15 18:57 boinc_mmap_file
[2024-05-15 18:57:39] -rw------- 1 boinc boinc      4295 May 15 18:57 pilotlog.txt
[2024-05-15 18:57:39] -rw------- 1 boinc boinc   1030518 May 15 18:57 log.38776125._003916.job.log.1
[2024-05-15 18:57:39] -rw------- 1 boinc boinc       357 May 15 18:57 output.list
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc       620 May 15 18:57 runtime_log
[2024-05-15 18:57:39] -rw------- 1 boinc boinc   1361920 May 15 18:57 result.tar.gz
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc     11428 May 15 18:57 runtime_log.err
[2024-05-15 18:57:39] -rw------- 1 boinc boinc       658 May 15 18:57 Z9eKDmcoiQ5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmMtGKDmdedvJm.diag
[2024-05-15 18:57:39] -rw-r--r-- 1 boinc boinc     21250 May 15 18:57 stderr.txt
[2024-05-15 18:57:39] HITS file was successfully produced:
[2024-05-15 18:57:39] -rw------- 1 boinc boinc 242599459 May 15 18:56 shared/HITS.pool.root.1
[2024-05-15 18:57:39]  *** Contents of shared directory: ***
[2024-05-15 18:57:39] total 825292
[2024-05-15 18:57:39] -rw-r--r-- 2 boinc boinc    480004 May 15 16:12 input.tar.gz
[2024-05-15 18:57:39] -rw-r--r-- 2 boinc boinc 600618267 May 15 16:12 ATLAS.root_0
[2024-05-15 18:57:39] -rw-r--r-- 2 boinc boinc     17537 May 15 16:12 start_atlas.sh
[2024-05-15 18:57:39] -rw------- 1 boinc boinc 242599459 May 15 18:56 HITS.pool.root.1
[2024-05-15 18:57:39] -rw------- 1 boinc boinc   1361920 May 15 18:57 result.tar.gz
18:57:41 (219572): run_atlas exited; CPU time 36205.677218
18:57:41 (219572): called boinc_finish(0)

</stderr_txt>
]]>

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