Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:53:02 (3162226): wrapper (7.7.26015): starting
15:53:02 (3162226): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 15:53:02] Arguments: --nthreads 4
[2024-05-15 15:53:02] Threads: 4
[2024-05-15 15:53:02] Checking for CVMFS
[2024-05-15 15:53:02] No cvmfs_config command found, will try listing directly
[2024-05-15 15:53:02] CVMFS is ok
[2024-05-15 15:53:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 15:53:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 15:53:02] Further information can be found at the LHC@home message board.
[2024-05-15 15:53:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 15:53:02] Checking for apptainer binary...
[2024-05-15 15:53:02] which: no apptainer in ((null))
[2024-05-15 15:53:02] apptainer is not installed, using version from CVMFS
[2024-05-15 15:53:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 15:53:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-05-15 15:53:03] apptainer works
[2024-05-15 15:53:03] Set ATHENA_PROC_NUMBER=4
[2024-05-15 15:53:03] Set ATHENA_CORE_NUMBER=4
[2024-05-15 15:53:03] Starting ATLAS job with PandaID=6205832890
[2024-05-15 15:53:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 18:49:16]  *** The last 200 lines of the pilot log: ***
[2024-05-15 18:49:16] 2024-05-15 16:49:01,346 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-15 18:49:16] 2024-05-15 16:49:01,349 | INFO     | fitting pss+swap vs Time
[2024-05-15 18:49:16] 2024-05-15 16:49:01,349 | INFO     | model: linear, x: [1715781218.0, 1715781279.0, 1715781340.0, 1715781401.0, 1715781462.0, 1715781523.0, 1715781584.0, 1715781645.0, 1715781706.0, 1715781767.0, 1715
[2024-05-15 18:49:16] 2024-05-15 16:49:01,349 | INFO     | sum of square deviations: 1605470102.0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,350 | INFO     | sum of deviations: 66797423956.99997
[2024-05-15 18:49:16] 2024-05-15 16:49:01,350 | INFO     | mean x: 1715786464.0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,351 | INFO     | mean y: 2245124.710982659
[2024-05-15 18:49:16] 2024-05-15 16:49:01,351 | INFO     | -- intersect: -71385017529.83197
[2024-05-15 18:49:16] 2024-05-15 16:49:01,351 | INFO     | intersect: -71385017529.83197
[2024-05-15 18:49:16] 2024-05-15 16:49:01,351 | INFO     | chi2: 4.93726607523589
[2024-05-15 18:49:16] 2024-05-15 16:49:01,351 | INFO     | model: linear, x: [1715781218.0, 1715781279.0, 1715781340.0, 1715781401.0, 1715781462.0, 1715781523.0, 1715781584.0, 1715781645.0, 1715781706.0, 1715781767.0, 1715
[2024-05-15 18:49:16] 2024-05-15 16:49:01,351 | INFO     | sum of square deviations: 1470248962.0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,352 | INFO     | sum of deviations: 75525899622.0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,352 | INFO     | mean x: 1715786311.5
[2024-05-15 18:49:16] 2024-05-15 16:49:01,353 | INFO     | mean y: 2254678.380952381
[2024-05-15 18:49:16] 2024-05-15 16:49:01,353 | INFO     | -- intersect: -88136766728.49193
[2024-05-15 18:49:16] 2024-05-15 16:49:01,353 | INFO     | intersect: -88136766728.49193
[2024-05-15 18:49:16] 2024-05-15 16:49:01,353 | INFO     | chi2: 4.141116785806331
[2024-05-15 18:49:16] 2024-05-15 16:49:01,353 | INFO     | current chi2=4.141116785806331 (change=16.125306542072888 %)
[2024-05-15 18:49:16] 2024-05-15 16:49:01,353 | INFO     | right removable region: 167
[2024-05-15 18:49:16] 2024-05-15 16:49:01,353 | INFO     | model: linear, x: [1715781523.0, 1715781584.0, 1715781645.0, 1715781706.0, 1715781767.0, 1715781828.0, 1715781889.0, 1715781950.0, 1715782011.0, 1715782072.0, 1715
[2024-05-15 18:49:16] 2024-05-15 16:49:01,354 | INFO     | sum of square deviations: 1470248962.0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,354 | INFO     | sum of deviations: 27280077302.0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,354 | INFO     | mean x: 1715786616.5
[2024-05-15 18:49:16] 2024-05-15 16:49:01,355 | INFO     | mean y: 2289550.654761905
[2024-05-15 18:49:16] 2024-05-15 16:49:01,355 | INFO     | -- intersect: -31833673433.590508
[2024-05-15 18:49:16] 2024-05-15 16:49:01,355 | INFO     | intersect: -31833673433.590508
[2024-05-15 18:49:16] 2024-05-15 16:49:01,355 | INFO     | chi2: 2.4225396401178263
[2024-05-15 18:49:16] 2024-05-15 16:49:01,355 | INFO     | current chi2=2.4225396401178263 (change=50.933581395001404 %)
[2024-05-15 18:49:16] 2024-05-15 16:49:01,355 | INFO     | model: linear, x: [1715781828.0, 1715781889.0, 1715781950.0, 1715782011.0, 1715782072.0, 1715782133.0, 1715782194.0, 1715782255.0, 1715782316.0, 1715782377.0, 1715
[2024-05-15 18:49:16] 2024-05-15 16:49:01,355 | INFO     | sum of square deviations: 1342841922.0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,356 | INFO     | sum of deviations: -4953002299.000001
[2024-05-15 18:49:16] 2024-05-15 16:49:01,356 | INFO     | mean x: 1715786769.0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,356 | INFO     | mean y: 2328141.061349693
[2024-05-15 18:49:16] 2024-05-15 16:49:01,356 | INFO     | -- intersect: 6330918031.071341
[2024-05-15 18:49:16] 2024-05-15 16:49:01,357 | INFO     | intersect: 6330918031.071341
[2024-05-15 18:49:16] 2024-05-15 16:49:01,357 | INFO     | chi2: 0.8912220485999586
[2024-05-15 18:49:16] 2024-05-15 16:49:01,357 | INFO     | current chi2=0.8912220485999586 (change=63.21125013431723 %)
[2024-05-15 18:49:16] 2024-05-15 16:49:01,357 | INFO     | model: linear, x: [1715782133.0, 1715782194.0, 1715782255.0, 1715782316.0, 1715782377.0, 1715782438.0, 1715782499.0, 1715782560.0, 1715782621.0, 1715782682.0, 1715
[2024-05-15 18:49:16] 2024-05-15 16:49:01,357 | INFO     | monitor loop #804: job 0:6205832890 is in state 'finished'
[2024-05-15 18:49:16] 2024-05-15 16:49:01,358 | INFO     | sum of square deviations: 1223016419.5
[2024-05-15 18:49:16] 2024-05-15 16:49:01,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 18:49:16] 2024-05-15 16:49:01,359 | INFO     | sum of deviations: -8397415306.0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,359 | INFO     | mean x: 1715786921.5
[2024-05-15 18:49:16] 2024-05-15 16:49:01,359 | INFO     | mean y: 2332431.924050633
[2024-05-15 18:49:16] 2024-05-15 16:49:01,359 | INFO     | -- intersect: 11783184370.387106
[2024-05-15 18:49:16] 2024-05-15 16:49:01,360 | INFO     | intersect: 11783184370.387106
[2024-05-15 18:49:16] 2024-05-15 16:49:01,360 | INFO     | chi2: 0.8391124938942819
[2024-05-15 18:49:16] 2024-05-15 16:49:01,360 | INFO     | current chi2=0.8391124938942819 (change=5.846977729908814 %)
[2024-05-15 18:49:16] 2024-05-15 16:49:01,360 | INFO     | left removable region: 30
[2024-05-15 18:49:16] 2024-05-15 16:49:01,360 | INFO     | model: linear, x: [1715783048.0, 1715783109.0, 1715783170.0, 1715783231.0, 1715783292.0, 1715783353.0, 1715783414.0, 1715783475.0, 1715783536.0, 1715783597.0, 1715
[2024-05-15 18:49:16] 2024-05-15 16:49:01,360 | INFO     | sum of square deviations: 797291228.0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,361 | INFO     | sum of deviations: 1126158515.0000002
[2024-05-15 18:49:16] 2024-05-15 16:49:01,361 | INFO     | mean x: 1715787196.0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,361 | INFO     | mean y: 2346674.7445255476
[2024-05-15 18:49:16] 2024-05-15 16:49:01,361 | INFO     | -- intersect: -2421169717.8168316
[2024-05-15 18:49:16] 2024-05-15 16:49:01,361 | INFO     | intersect: -2421169717.8168316
[2024-05-15 18:49:16] 2024-05-15 16:49:01,361 | INFO     | chi2: 0.00039440314529348567
[2024-05-15 18:49:16] 2024-05-15 16:49:01,361 | INFO     | -- intersect: -2421169717.8168316
[2024-05-15 18:49:16] 2024-05-15 16:49:01,361 | INFO     | current memory leak: 1.41 B/s (using 137 data points, chi2=0.00)
[2024-05-15 18:49:16] 2024-05-15 16:49:01,362 | INFO     | ..............................
[2024-05-15 18:49:16] 2024-05-15 16:49:01,362 | INFO     | . Timing measurements:
[2024-05-15 18:49:16] 2024-05-15 16:49:01,362 | INFO     | . get job = 0 s
[2024-05-15 18:49:16] 2024-05-15 16:49:01,362 | INFO     | . initial setup = 1 s
[2024-05-15 18:49:16] 2024-05-15 16:49:01,362 | INFO     | . payload setup = 5 s
[2024-05-15 18:49:16] 2024-05-15 16:49:01,362 | INFO     | . stage-in = 0 s
[2024-05-15 18:49:16] 2024-05-15 16:49:01,362 | INFO     | . payload execution = 10515 s
[2024-05-15 18:49:16] 2024-05-15 16:49:01,362 | INFO     | . stage-out = 0 s
[2024-05-15 18:49:16] 2024-05-15 16:49:01,362 | INFO     | . log creation = 0 s
[2024-05-15 18:49:16] 2024-05-15 16:49:01,362 | INFO     | ..............................
[2024-05-15 18:49:16] 2024-05-15 16:49:01,423 | INFO     | 
[2024-05-15 18:49:16] 2024-05-15 16:49:01,423 | INFO     | job summary report
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | --------------------------------------------------
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | PanDA job id: 6205832890
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | task id: 38776125
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | errors: (none)
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | pilot state: finished 
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | transexitcode: 0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | exeerrorcode: 0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | exeerrordiag: 
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | exitcode: 0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | exitmsg: OK
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | cpuconsumptiontime: 39347 s
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | nevents: 400
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | neventsw: 0
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | pid: 3175260
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | pgrp: 3175260
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | corecount: 4
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | event service: False
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | sizes: {0: 2396701, 1: 2396701, 4: 2396935, 11: 2396963, 10525: 2425851, 10527: 2434833, 10528: 2435017, 10533: 2435187}
[2024-05-15 18:49:16] 2024-05-15 16:49:01,424 | INFO     | --------------------------------------------------
[2024-05-15 18:49:16] 2024-05-15 16:49:01,425 | INFO     | 
[2024-05-15 18:49:16] 2024-05-15 16:49:01,425 | INFO     | executing command: ls -lF /scratch/boinc/var/slot88/slots/1
[2024-05-15 18:49:16] 2024-05-15 16:49:01,450 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,450 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,450 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,450 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,450 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,450 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,451 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 18:49:16] 2024-05-15 16:49:01,452 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,452 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 18:49:16] 2024-05-15 16:49:01,452 | INFO     | job 6205832890 has completed (purged errors)
[2024-05-15 18:49:16] 2024-05-15 16:49:01,452 | INFO     | overall cleanup function is called
[2024-05-15 18:49:16] 2024-05-15 16:49:02,459 | INFO     | --- collectZombieJob: --- 10, [3175260]
[2024-05-15 18:49:16] 2024-05-15 16:49:02,459 | INFO     | zombie collector waiting for pid 3175260
[2024-05-15 18:49:16] 2024-05-15 16:49:02,460 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 18:49:16] 2024-05-15 16:49:03,465 | INFO     | collected zombie processes
[2024-05-15 18:49:16] 2024-05-15 16:49:03,465 | INFO     | will now attempt to kill all subprocesses of pid=3175260
[2024-05-15 18:49:16] 2024-05-15 16:49:03,689 | INFO     | process IDs to be killed: [3175260] (in reverse order)
[2024-05-15 18:49:16] 2024-05-15 16:49:03,864 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 18:49:16] 2024-05-15 16:49:03,865 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 18:49:16] 2024-05-15 16:49:03,879 | INFO     | did not find any defunct processes belonging to 3175260
[2024-05-15 18:49:16] 2024-05-15 16:49:03,890 | INFO     | did not find any defunct processes belonging to 3175260
[2024-05-15 18:49:16] 2024-05-15 16:49:03,890 | INFO     | ready for new job
[2024-05-15 18:49:16] 2024-05-15 16:49:03,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 18:49:16] 2024-05-15 16:49:03,892 | INFO     | *************************************
[2024-05-15 18:49:16] 2024-05-15 16:49:03,892 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 18:49:16] 2024-05-15 16:49:03,892 | INFO     | *************************************
[2024-05-15 18:49:16] 2024-05-15 16:49:03,892 | INFO     | 
[2024-05-15 18:49:16] 2024-05-15 16:49:03,896 | INFO     | architecture information:
[2024-05-15 18:49:16] 2024-05-15 16:49:03,897 | INFO     | executing command: cat /etc/os-release
[2024-05-15 18:49:16] 2024-05-15 16:49:03,916 | INFO     | cat /etc/os-release:
[2024-05-15 18:49:16] NAME="CentOS Linux"
[2024-05-15 18:49:16] VERSION="7 (Core)"
[2024-05-15 18:49:16] ID="centos"
[2024-05-15 18:49:16] ID_LIKE="rhel fedora"
[2024-05-15 18:49:16] VERSION_ID="7"
[2024-05-15 18:49:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 18:49:16] ANSI_COLOR="0;31"
[2024-05-15 18:49:16] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 18:49:16] HOME_URL="https://www.centos.org/"
[2024-05-15 18:49:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 18:49:16] 
[2024-05-15 18:49:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 18:49:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 18:49:16] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 18:49:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 18:49:16] 
[2024-05-15 18:49:16] 2024-05-15 16:49:03,916 | INFO     | *************************************
[2024-05-15 18:49:16] 2024-05-15 16:49:04,418 | INFO     | executing command: df -mP /scratch/boinc/var/slot88/slots/1
[2024-05-15 18:49:16] 2024-05-15 16:49:04,442 | INFO     | sufficient remaining disk space (3009449820160 B)
[2024-05-15 18:49:16] 2024-05-15 16:49:04,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 18:49:16] 2024-05-15 16:49:04,442 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 18:49:16] 2024-05-15 16:49:04,628 | INFO     | all payload control threads have been joined
[2024-05-15 18:49:16] 2024-05-15 16:49:04,869 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 18:49:16] 2024-05-15 16:49:04,869 | INFO     | aborting loop
[2024-05-15 18:49:16] 2024-05-15 16:49:04,880 | INFO     | all data control threads have been joined
[2024-05-15 18:49:16] 2024-05-15 16:49:05,125 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 18:49:16] 2024-05-15 16:49:05,126 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 18:49:16] 2024-05-15 16:49:05,126 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 18:49:16] 2024-05-15 16:49:05,230 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 18:49:16] 2024-05-15 16:49:05,444 | INFO     | [job] retrieve thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:05,509 | INFO     | [payload] validate_post thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:05,624 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:05,633 | INFO     | [payload] control thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:05,812 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:05,874 | INFO     | [job] job monitor thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:05,885 | INFO     | [data] control thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:05,895 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:05,929 | INFO     | all job control threads have been joined
[2024-05-15 18:49:16] 2024-05-15 16:49:05,929 | INFO     | [payload] failed_post thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:06,238 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:06,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 18:49:16] 2024-05-15 16:49:06,676 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 18:49:16] 2024-05-15 16:49:06,845 | INFO     | [job] validate thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:06,912 | INFO     | [data] copytool_in thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:06,934 | INFO     | [job] control thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:07,236 | INFO     | [data] copytool_out thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:07,438 | INFO     | [job] queue monitor thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:10,679 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 18:49:16] 2024-05-15 16:49:10,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47917862925376)>', '<ExcThread(monitor, started 47918036539136)>']
[2024-05-15 18:49:16] 2024-05-15 16:49:11,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 18:49:16] 2024-05-15 16:49:11,155 | INFO     | [monitor] control thread has ended
[2024-05-15 18:49:16] 2024-05-15 16:49:15,822 | INFO     | all workflow threads have been joined
[2024-05-15 18:49:16] 2024-05-15 16:49:15,822 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 18:49:16] 2024-05-15 16:49:15,823 | INFO     | traces error code: 0
[2024-05-15 18:49:16] 2024-05-15 16:49:15,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 18:49:16] 2024-05-15 16:49:15,891 [wrapper] ==== pilot stdout END ====
[2024-05-15 18:49:16] 2024-05-15 16:49:15,894 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 18:49:16] 2024-05-15 16:49:15,896 [wrapper] pilotpid: 3166916
[2024-05-15 18:49:16] 2024-05-15 16:49:15,899 [wrapper] Pilot exit status: 0
[2024-05-15 18:49:16] 2024-05-15 16:49:15,910 [wrapper] pandaids: 6205832890
[2024-05-15 18:49:16] 2024-05-15 16:49:16,016 [wrapper] cleanup: SIGTERM to supervisor_pilot 4040424 3166917
[2024-05-15 18:49:16] 2024-05-15 16:49:16,019 [wrapper] Test setup, not cleaning
[2024-05-15 18:49:16] 2024-05-15 16:49:16,021 [wrapper] ==== wrapper stdout END ====
[2024-05-15 18:49:16] 2024-05-15 16:49:16,024 [wrapper] ==== wrapper stderr END ====
[2024-05-15 18:49:16] 2024-05-15 16:49:16,029 [wrapper] apfmon messages muted
[2024-05-15 18:49:16]  *** Error codes and diagnostics ***
[2024-05-15 18:49:16]     "exeErrorCode": 0,
[2024-05-15 18:49:16]     "exeErrorDiag": "",
[2024-05-15 18:49:16]     "pilotErrorCode": 0,
[2024-05-15 18:49:16]     "pilotErrorDiag": "",
[2024-05-15 18:49:16]  *** Listing of results directory ***
[2024-05-15 18:49:16] total 836176
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc    467845 May 13 13:11 pilot3.tar.gz
[2024-05-15 18:49:16] -rwx------ 1 boinc boinc     32251 May 13 13:12 runpilot2-wrapper.sh
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc      5633 May 13 13:12 queuedata.json
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc       100 May 15 15:52 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 18:49:16] -rwxr-xr-x 1 boinc boinc      7986 May 15 15:52 run_atlas
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc       105 May 15 15:52 job.xml
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc      6642 May 15 15:53 init_data.xml
[2024-05-15 18:49:16] -rw-r--r-- 2 boinc boinc 598515673 May 15 15:53 EVNT.38776119._000050.pool.root.1
[2024-05-15 18:49:16] -rw-r--r-- 2 boinc boinc     17537 May 15 15:53 start_atlas.sh
[2024-05-15 18:49:16] drwxrwx--x 2 boinc boinc      4096 May 15 15:53 shared
[2024-05-15 18:49:16] -rw-r--r-- 2 boinc boinc    480007 May 15 15:53 input.tar.gz
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc         0 May 15 15:53 boinc_lockfile
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc      2632 May 15 15:53 pandaJob.out
[2024-05-15 18:49:16] -rw------- 1 boinc boinc       424 May 15 15:53 setup.sh.local
[2024-05-15 18:49:16] -rw------- 1 boinc boinc   1010550 May 15 15:53 agis_schedconf.cvmfs.json
[2024-05-15 18:49:16] -rw------- 1 boinc boinc         0 May 15 15:53 agis_ddmendpoints.agis.ALL.json
[2024-05-15 18:49:16] -rw------- 1 boinc boinc   1325758 May 15 15:53 cric_ddmendpoints.json
[2024-05-15 18:49:16] drwx------ 4 boinc boinc      4096 May 15 15:53 pilot3
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc       531 May 15 18:48 boinc_task_state.xml
[2024-05-15 18:49:16] -rw------- 1 boinc boinc 251412932 May 15 18:48 HITS.38776125._003846.pool.root.1
[2024-05-15 18:49:16] -rw------- 1 boinc boinc        95 May 15 18:48 pilot_heartbeat.json
[2024-05-15 18:49:16] -rw------- 1 boinc boinc      1038 May 15 18:48 memory_monitor_summary.json
[2024-05-15 18:49:16] -rw------- 1 boinc boinc    316599 May 15 18:48 log.38776125._003846.job.log.tgz.1
[2024-05-15 18:49:16] -rw------- 1 boinc boinc      7709 May 15 18:49 heartbeat.json
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc      8192 May 15 18:49 boinc_mmap_file
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc        28 May 15 18:49 wrapper_checkpoint.txt
[2024-05-15 18:49:16] -rw------- 1 boinc boinc      4222 May 15 18:49 pilotlog.txt
[2024-05-15 18:49:16] -rw------- 1 boinc boinc   1080736 May 15 18:49 log.38776125._003846.job.log.1
[2024-05-15 18:49:16] -rw------- 1 boinc boinc       357 May 15 18:49 output.list
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc       620 May 15 18:49 runtime_log
[2024-05-15 18:49:16] -rw------- 1 boinc boinc   1413120 May 15 18:49 result.tar.gz
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc     11410 May 15 18:49 runtime_log.err
[2024-05-15 18:49:16] -rw------- 1 boinc boinc       655 May 15 18:49 aaJKDmRmiQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDm2UKKDm4fO3Wn.diag
[2024-05-15 18:49:16] -rw-r--r-- 1 boinc boinc     21353 May 15 18:49 stderr.txt
[2024-05-15 18:49:16] HITS file was successfully produced:
[2024-05-15 18:49:16] -rw------- 1 boinc boinc 251412932 May 15 18:48 shared/HITS.pool.root.1
[2024-05-15 18:49:16]  *** Contents of shared directory: ***
[2024-05-15 18:49:16] total 831892
[2024-05-15 18:49:16] -rw-r--r-- 2 boinc boinc 598515673 May 15 15:53 ATLAS.root_0
[2024-05-15 18:49:16] -rw-r--r-- 2 boinc boinc     17537 May 15 15:53 start_atlas.sh
[2024-05-15 18:49:16] -rw-r--r-- 2 boinc boinc    480007 May 15 15:53 input.tar.gz
[2024-05-15 18:49:16] -rw------- 1 boinc boinc 251412932 May 15 18:48 HITS.pool.root.1
[2024-05-15 18:49:16] -rw------- 1 boinc boinc   1413120 May 15 18:49 result.tar.gz
18:49:18 (3162226): run_atlas exited; CPU time 39094.788571
18:49:18 (3162226): called boinc_finish(0)

</stderr_txt>
]]>

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