Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:28:39 (2189772): wrapper (7.7.26015): starting
01:28:39 (2189772): wrapper: running run_atlas (--nthreads 4)
[2024-05-16 01:28:39] Arguments: --nthreads 4
[2024-05-16 01:28:39] Threads: 4
[2024-05-16 01:28:39] Checking for CVMFS
[2024-05-16 01:28:39] No cvmfs_config command found, will try listing directly
[2024-05-16 01:28:39] CVMFS is ok
[2024-05-16 01:28:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-16 01:28:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-16 01:28:39] Further information can be found at the LHC@home message board.
[2024-05-16 01:28:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-16 01:28:39] Checking for apptainer binary...
[2024-05-16 01:28:39] which: no apptainer in ((null))
[2024-05-16 01:28:39] apptainer is not installed, using version from CVMFS
[2024-05-16 01:28:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-16 01:28:39] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-05-16 01:28:39] apptainer works
[2024-05-16 01:28:39] Set ATHENA_PROC_NUMBER=4
[2024-05-16 01:28:39] Set ATHENA_CORE_NUMBER=4
[2024-05-16 01:28:40] Starting ATLAS job with PandaID=6205832185
[2024-05-16 01:28:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 04:39:10]  *** The last 200 lines of the pilot log: ***
[2024-05-16 04:39:10] 2024-05-16 02:38:47,775 | INFO     | fitting pss+swap vs Time
[2024-05-16 04:39:10] 2024-05-16 02:38:47,776 | INFO     | model: linear, x: [1715815758.0, 1715815819.0, 1715815880.0, 1715815941.0, 1715816002.0, 1715816063.0, 1715816124.0, 1715816185.0, 1715816246.0, 1715816307.0, 1715
[2024-05-16 04:39:10] 2024-05-16 02:38:47,776 | INFO     | sum of square deviations: 2027639878.0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,777 | INFO     | sum of deviations: 70134592009.99998
[2024-05-16 04:39:10] 2024-05-16 02:38:47,777 | INFO     | mean x: 1715821431.0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,777 | INFO     | mean y: 2245117.7754010693
[2024-05-16 04:39:10] 2024-05-16 02:38:47,777 | INFO     | -- intersect: -59346773083.57176
[2024-05-16 04:39:10] 2024-05-16 02:38:47,778 | INFO     | intersect: -59346773083.57176
[2024-05-16 04:39:10] 2024-05-16 02:38:47,778 | INFO     | chi2: 4.986871248971511
[2024-05-16 04:39:10] 2024-05-16 02:38:47,778 | INFO     | model: linear, x: [1715815758.0, 1715815819.0, 1715815880.0, 1715815941.0, 1715816002.0, 1715816063.0, 1715816124.0, 1715816185.0, 1715816246.0, 1715816307.0, 1715
[2024-05-16 04:39:10] 2024-05-16 02:38:47,778 | INFO     | sum of square deviations: 1869302025.5
[2024-05-16 04:39:10] 2024-05-16 02:38:47,779 | INFO     | sum of deviations: 79773176786.5
[2024-05-16 04:39:10] 2024-05-16 02:38:47,779 | INFO     | mean x: 1715821278.5
[2024-05-16 04:39:10] 2024-05-16 02:38:47,780 | INFO     | mean y: 2254155.0164835164
[2024-05-16 04:39:10] 2024-05-16 02:38:47,780 | INFO     | -- intersect: -73221073224.2
[2024-05-16 04:39:10] 2024-05-16 02:38:47,780 | INFO     | intersect: -73221073224.2
[2024-05-16 04:39:10] 2024-05-16 02:38:47,780 | INFO     | chi2: 4.200465967342956
[2024-05-16 04:39:10] 2024-05-16 02:38:47,780 | INFO     | current chi2=4.200465967342956 (change=15.76951243308602 %)
[2024-05-16 04:39:10] 2024-05-16 02:38:47,780 | INFO     | right removable region: 181
[2024-05-16 04:39:10] 2024-05-16 02:38:47,781 | INFO     | model: linear, x: [1715816063.0, 1715816124.0, 1715816185.0, 1715816246.0, 1715816307.0, 1715816368.0, 1715816429.0, 1715816490.0, 1715816551.0, 1715816612.0, 1715
[2024-05-16 04:39:10] 2024-05-16 02:38:47,781 | INFO     | sum of square deviations: 1869302025.5
[2024-05-16 04:39:10] 2024-05-16 02:38:47,782 | INFO     | sum of deviations: 26994273086.999992
[2024-05-16 04:39:10] 2024-05-16 02:38:47,782 | INFO     | mean x: 1715821583.5
[2024-05-16 04:39:10] 2024-05-16 02:38:47,782 | INFO     | mean y: 2286541.340659341
[2024-05-16 04:39:10] 2024-05-16 02:38:47,782 | INFO     | -- intersect: -24775601548.29473
[2024-05-16 04:39:10] 2024-05-16 02:38:47,783 | INFO     | intersect: -24775601548.29473
[2024-05-16 04:39:10] 2024-05-16 02:38:47,784 | INFO     | chi2: 2.416039407997628
[2024-05-16 04:39:10] 2024-05-16 02:38:47,784 | INFO     | current chi2=2.416039407997628 (change=51.55199949274988 %)
[2024-05-16 04:39:10] 2024-05-16 02:38:47,784 | INFO     | model: linear, x: [1715816368.0, 1715816429.0, 1715816490.0, 1715816551.0, 1715816612.0, 1715816673.0, 1715816734.0, 1715816795.0, 1715816856.0, 1715816917.0, 1715
[2024-05-16 04:39:10] 2024-05-16 02:38:47,784 | INFO     | sum of square deviations: 1719429448.0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,785 | INFO     | sum of deviations: -7545852866.0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,785 | INFO     | mean x: 1715821736.0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,785 | INFO     | mean y: 2321694.175141243
[2024-05-16 04:39:10] 2024-05-16 02:38:47,785 | INFO     | -- intersect: 7532341829.168604
[2024-05-16 04:39:10] 2024-05-16 02:38:47,785 | INFO     | intersect: 7532341829.168604
[2024-05-16 04:39:10] 2024-05-16 02:38:47,786 | INFO     | chi2: 0.9043846071815711
[2024-05-16 04:39:10] 2024-05-16 02:38:47,786 | INFO     | current chi2=0.9043846071815711 (change=62.567472857112485 %)
[2024-05-16 04:39:10] 2024-05-16 02:38:47,786 | INFO     | model: linear, x: [1715816673.0, 1715816734.0, 1715816795.0, 1715816856.0, 1715816917.0, 1715816978.0, 1715817039.0, 1715817100.0, 1715817161.0, 1715817222.0, 1715
[2024-05-16 04:39:10] 2024-05-16 02:38:47,786 | INFO     | sum of square deviations: 1577789583.0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,786 | INFO     | sum of deviations: -11888864742.0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,786 | INFO     | mean x: 1715821888.5
[2024-05-16 04:39:10] 2024-05-16 02:38:47,786 | INFO     | mean y: 2326282.2093023257
[2024-05-16 04:39:10] 2024-05-16 02:38:47,787 | INFO     | -- intersect: 12931283713.245596
[2024-05-16 04:39:10] 2024-05-16 02:38:47,787 | INFO     | intersect: 12931283713.245596
[2024-05-16 04:39:10] 2024-05-16 02:38:47,787 | INFO     | chi2: 0.8320230919829088
[2024-05-16 04:39:10] 2024-05-16 02:38:47,787 | INFO     | current chi2=0.8320230919829088 (change=8.001188280301463 %)
[2024-05-16 04:39:10] 2024-05-16 02:38:47,787 | INFO     | left removable region: 30
[2024-05-16 04:39:10] 2024-05-16 02:38:47,787 | INFO     | model: linear, x: [1715817588.0, 1715817649.0, 1715817710.0, 1715817771.0, 1715817832.0, 1715817893.0, 1715817954.0, 1715818015.0, 1715818076.0, 1715818137.0, 1715
[2024-05-16 04:39:10] 2024-05-16 02:38:47,787 | INFO     | sum of square deviations: 1067554900.0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | sum of deviations: -36110231.00000013
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | mean x: 1715822163.0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | mean y: 2337418.2317880793
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | -- intersect: 60375402.65849051
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | intersect: 60375402.65849051
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | chi2: 0.001249428616133935
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | -- intersect: 60375402.65849051
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | current memory leak: -0.03 B/s (using 151 data points, chi2=0.00)
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | ..............................
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | . Timing measurements:
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | . get job = 0 s
[2024-05-16 04:39:10] 2024-05-16 02:38:47,788 | INFO     | . initial setup = 1 s
[2024-05-16 04:39:10] 2024-05-16 02:38:47,789 | INFO     | . payload setup = 6 s
[2024-05-16 04:39:10] 2024-05-16 02:38:47,789 | INFO     | . stage-in = 0 s
[2024-05-16 04:39:10] 2024-05-16 02:38:47,789 | INFO     | . payload execution = 11365 s
[2024-05-16 04:39:10] 2024-05-16 02:38:47,789 | INFO     | . stage-out = 0 s
[2024-05-16 04:39:10] 2024-05-16 02:38:47,789 | INFO     | . log creation = 0 s
[2024-05-16 04:39:10] 2024-05-16 02:38:47,789 | INFO     | ..............................
[2024-05-16 04:39:10] 2024-05-16 02:38:47,851 | INFO     | 
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | job summary report
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | --------------------------------------------------
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | PanDA job id: 6205832185
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | task id: 38776125
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | errors: (none)
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | pilot state: finished 
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | transexitcode: 0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | exeerrorcode: 0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | exeerrordiag: 
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | exitcode: 0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | exitmsg: OK
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | cpuconsumptiontime: 42865 s
[2024-05-16 04:39:10] 2024-05-16 02:38:47,852 | INFO     | nevents: 400
[2024-05-16 04:39:10] 2024-05-16 02:38:47,853 | INFO     | neventsw: 0
[2024-05-16 04:39:10] 2024-05-16 02:38:47,853 | INFO     | pid: 2209383
[2024-05-16 04:39:10] 2024-05-16 02:38:47,853 | INFO     | pgrp: 2209383
[2024-05-16 04:39:10] 2024-05-16 02:38:47,853 | INFO     | corecount: 4
[2024-05-16 04:39:10] 2024-05-16 02:38:47,853 | INFO     | event service: False
[2024-05-16 04:39:10] 2024-05-16 02:38:47,853 | INFO     | sizes: {0: 2392082, 1: 2392281, 5: 2392487, 11: 2392543, 11375: 2421623, 11376: 2430789, 11381: 2430903}
[2024-05-16 04:39:10] 2024-05-16 02:38:47,853 | INFO     | --------------------------------------------------
[2024-05-16 04:39:10] 2024-05-16 02:38:47,853 | INFO     | 
[2024-05-16 04:39:10] 2024-05-16 02:38:47,853 | INFO     | executing command: ls -lF /scratch/boinc/var/slot88/slots/1
[2024-05-16 04:39:10] 2024-05-16 02:38:48,046 | WARNING  | process 2209383 is no longer using CPU - aborting
[2024-05-16 04:39:10] 2024-05-16 02:38:48,047 | INFO     | aborting job monitoring since job object (job id=6205832185) has expired
[2024-05-16 04:39:10] 2024-05-16 02:38:48,067 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,068 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,068 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,068 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,068 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,068 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,068 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,068 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,068 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,068 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,068 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,069 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,069 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,069 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,069 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,069 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,069 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,069 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 04:39:10] 2024-05-16 02:38:48,069 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,069 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 04:39:10] 2024-05-16 02:38:48,069 | INFO     | job 6205832185 has completed (purged errors)
[2024-05-16 04:39:10] 2024-05-16 02:38:48,069 | INFO     | overall cleanup function is called
[2024-05-16 04:39:10] 2024-05-16 02:38:49,077 | INFO     | --- collectZombieJob: --- 10, [2209383]
[2024-05-16 04:39:10] 2024-05-16 02:38:49,078 | INFO     | zombie collector waiting for pid 2209383
[2024-05-16 04:39:10] 2024-05-16 02:38:49,078 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 04:39:10] 2024-05-16 02:38:50,082 | INFO     | collected zombie processes
[2024-05-16 04:39:10] 2024-05-16 02:38:50,082 | INFO     | will now attempt to kill all subprocesses of pid=2209383
[2024-05-16 04:39:10] 2024-05-16 02:38:50,292 | INFO     | process IDs to be killed: [2209383] (in reverse order)
[2024-05-16 04:39:10] 2024-05-16 02:38:50,529 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 04:39:10] 2024-05-16 02:38:50,529 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 04:39:10] 2024-05-16 02:38:50,548 | INFO     | did not find any defunct processes belonging to 2209383
[2024-05-16 04:39:10] 2024-05-16 02:38:50,560 | INFO     | did not find any defunct processes belonging to 2209383
[2024-05-16 04:39:10] 2024-05-16 02:38:50,560 | INFO     | ready for new job
[2024-05-16 04:39:10] 2024-05-16 02:38:50,560 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 04:39:10] 2024-05-16 02:38:50,562 | INFO     | *************************************
[2024-05-16 04:39:10] 2024-05-16 02:38:50,562 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 04:39:10] 2024-05-16 02:38:50,562 | INFO     | *************************************
[2024-05-16 04:39:10] 2024-05-16 02:38:50,562 | INFO     | 
[2024-05-16 04:39:10] 2024-05-16 02:38:50,567 | INFO     | architecture information:
[2024-05-16 04:39:10] 2024-05-16 02:38:50,567 | INFO     | executing command: cat /etc/os-release
[2024-05-16 04:39:10] 2024-05-16 02:38:50,582 | INFO     | cat /etc/os-release:
[2024-05-16 04:39:10] NAME="CentOS Linux"
[2024-05-16 04:39:10] VERSION="7 (Core)"
[2024-05-16 04:39:10] ID="centos"
[2024-05-16 04:39:10] ID_LIKE="rhel fedora"
[2024-05-16 04:39:10] VERSION_ID="7"
[2024-05-16 04:39:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 04:39:10] ANSI_COLOR="0;31"
[2024-05-16 04:39:10] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 04:39:10] HOME_URL="https://www.centos.org/"
[2024-05-16 04:39:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 04:39:10] 
[2024-05-16 04:39:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 04:39:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 04:39:10] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 04:39:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 04:39:10] 
[2024-05-16 04:39:10] 2024-05-16 02:38:50,582 | INFO     | *************************************
[2024-05-16 04:39:10] 2024-05-16 02:38:51,085 | INFO     | executing command: df -mP /scratch/boinc/var/slot88/slots/1
[2024-05-16 04:39:10] 2024-05-16 02:38:51,107 | INFO     | sufficient remaining disk space (3012280975360 B)
[2024-05-16 04:39:10] 2024-05-16 02:38:51,107 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 04:39:10] 2024-05-16 02:38:51,107 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 04:39:10] 2024-05-16 02:38:51,266 | INFO     | all payload control threads have been joined
[2024-05-16 04:39:10] 2024-05-16 02:38:51,329 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 04:39:10] 2024-05-16 02:38:51,411 | INFO     | all data control threads have been joined
[2024-05-16 04:39:10] 2024-05-16 02:38:51,419 | INFO     | all job control threads have been joined
[2024-05-16 04:39:10] 2024-05-16 02:38:51,554 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 04:39:10] 2024-05-16 02:38:51,554 | INFO     | aborting loop
[2024-05-16 04:39:10] 2024-05-16 02:38:51,639 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 04:39:10] 2024-05-16 02:38:51,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 04:39:10] 2024-05-16 02:38:51,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 04:39:10] 2024-05-16 02:38:52,112 | INFO     | [job] retrieve thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:52,269 | INFO     | [payload] control thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:52,412 | INFO     | [data] control thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:52,422 | INFO     | [job] control thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:52,560 | INFO     | [job] job monitor thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:52,734 | INFO     | [payload] validate_post thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:52,861 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 04:39:10] 2024-05-16 02:38:53,147 | INFO     | [job] validate thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:53,324 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:53,334 | INFO     | [data] copytool_out thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:53,364 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:53,431 | INFO     | [data] copytool_in thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:53,543 | INFO     | [payload] failed_post thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:53,560 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:53,866 | INFO     | [job] queue monitor thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:38:53,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 04:39:10] 2024-05-16 02:38:57,931 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:39:01,753 | INFO     | job.realtimelogging is not enabled
[2024-05-16 04:39:10] 2024-05-16 02:39:02,758 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 04:39:10] 2024-05-16 02:39:04,798 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47757891806272)>', '<ExcThread(monitor, started 47758060955392)>']
[2024-05-16 04:39:10] 2024-05-16 02:39:05,705 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 04:39:10] 2024-05-16 02:39:05,705 | INFO     | [monitor] control thread has ended
[2024-05-16 04:39:10] 2024-05-16 02:39:09,823 | INFO     | all workflow threads have been joined
[2024-05-16 04:39:10] 2024-05-16 02:39:09,823 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 04:39:10] 2024-05-16 02:39:09,824 | INFO     | traces error code: 0
[2024-05-16 04:39:10] 2024-05-16 02:39:09,824 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 04:39:10] 2024-05-16 02:39:09,905 [wrapper] ==== pilot stdout END ====
[2024-05-16 04:39:10] 2024-05-16 02:39:09,908 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 04:39:10] 2024-05-16 02:39:09,911 [wrapper] pilotpid: 2194406
[2024-05-16 04:39:10] 2024-05-16 02:39:09,915 [wrapper] Pilot exit status: 0
[2024-05-16 04:39:10] 2024-05-16 02:39:09,930 [wrapper] pandaids: 6205832185
[2024-05-16 04:39:10] 2024-05-16 02:39:10,034 [wrapper] cleanup: SIGTERM to supervisor_pilot 3282746 2194407
[2024-05-16 04:39:10] 2024-05-16 02:39:10,036 [wrapper] Test setup, not cleaning
[2024-05-16 04:39:10] 2024-05-16 02:39:10,038 [wrapper] ==== wrapper stdout END ====
[2024-05-16 04:39:10] 2024-05-16 02:39:10,041 [wrapper] ==== wrapper stderr END ====
[2024-05-16 04:39:10] 2024-05-16 02:39:10,046 [wrapper] apfmon messages muted
[2024-05-16 04:39:10]  *** Error codes and diagnostics ***
[2024-05-16 04:39:10]     "exeErrorCode": 0,
[2024-05-16 04:39:10]     "exeErrorDiag": "",
[2024-05-16 04:39:10]     "pilotErrorCode": 0,
[2024-05-16 04:39:10]     "pilotErrorDiag": "",
[2024-05-16 04:39:10]  *** Listing of results directory ***
[2024-05-16 04:39:10] total 830024
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc    467845 May 13 13:11 pilot3.tar.gz
[2024-05-16 04:39:10] -rwx------ 1 boinc boinc     32251 May 13 13:12 runpilot2-wrapper.sh
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc      5633 May 13 13:12 queuedata.json
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc       100 May 16 01:28 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 04:39:10] -rwxr-xr-x 1 boinc boinc      7986 May 16 01:28 run_atlas
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc       105 May 16 01:28 job.xml
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc      6642 May 16 01:28 init_data.xml
[2024-05-16 04:39:10] -rw-r--r-- 2 boinc boinc 599342988 May 16 01:28 EVNT.38776119._000099.pool.root.1
[2024-05-16 04:39:10] -rw-r--r-- 2 boinc boinc     17537 May 16 01:28 start_atlas.sh
[2024-05-16 04:39:10] drwxrwx--x 2 boinc boinc      4096 May 16 01:28 shared
[2024-05-16 04:39:10] -rw-r--r-- 2 boinc boinc    480010 May 16 01:28 input.tar.gz
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc         0 May 16 01:28 boinc_lockfile
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc      2632 May 16 01:28 pandaJob.out
[2024-05-16 04:39:10] -rw------- 1 boinc boinc       424 May 16 01:28 setup.sh.local
[2024-05-16 04:39:10] -rw------- 1 boinc boinc   1011347 May 16 01:28 agis_schedconf.cvmfs.json
[2024-05-16 04:39:10] -rw------- 1 boinc boinc   1324701 May 16 01:28 cric_ddmendpoints.json
[2024-05-16 04:39:10] drwx------ 4 boinc boinc      4096 May 16 01:28 pilot3
[2024-05-16 04:39:10] -rw------- 1 boinc boinc 244045281 May 16 04:38 HITS.38776125._003843.pool.root.1
[2024-05-16 04:39:10] -rw------- 1 boinc boinc        95 May 16 04:38 pilot_heartbeat.json
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc       531 May 16 04:38 boinc_task_state.xml
[2024-05-16 04:39:10] -rw------- 1 boinc boinc      1041 May 16 04:38 memory_monitor_summary.json
[2024-05-16 04:39:10] -rw------- 1 boinc boinc         0 May 16 04:38 agis_ddmendpoints.agis.ALL.json
[2024-05-16 04:39:10] -rw------- 1 boinc boinc    328296 May 16 04:38 log.38776125._003843.job.log.tgz.1
[2024-05-16 04:39:10] -rw------- 1 boinc boinc      7713 May 16 04:38 heartbeat.json
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc      8192 May 16 04:38 boinc_mmap_file
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc        28 May 16 04:38 wrapper_checkpoint.txt
[2024-05-16 04:39:10] -rw------- 1 boinc boinc      4294 May 16 04:39 pilotlog.txt
[2024-05-16 04:39:10] -rw------- 1 boinc boinc   1185868 May 16 04:39 log.38776125._003843.job.log.1
[2024-05-16 04:39:10] -rw------- 1 boinc boinc       357 May 16 04:39 output.list
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc       620 May 16 04:39 runtime_log
[2024-05-16 04:39:10] -rw------- 1 boinc boinc   1536000 May 16 04:39 result.tar.gz
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc     11410 May 16 04:39 runtime_log.err
[2024-05-16 04:39:10] -rw------- 1 boinc boinc       657 May 16 04:39 1yQODmQmiQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmzUKKDm7fpixm.diag
[2024-05-16 04:39:10] -rw-r--r-- 1 boinc boinc     21054 May 16 04:39 stderr.txt
[2024-05-16 04:39:10] HITS file was successfully produced:
[2024-05-16 04:39:10] -rw------- 1 boinc boinc 244045281 May 16 04:38 shared/HITS.pool.root.1
[2024-05-16 04:39:10]  *** Contents of shared directory: ***
[2024-05-16 04:39:10] total 825624
[2024-05-16 04:39:10] -rw-r--r-- 2 boinc boinc 599342988 May 16 01:28 ATLAS.root_0
[2024-05-16 04:39:10] -rw-r--r-- 2 boinc boinc     17537 May 16 01:28 start_atlas.sh
[2024-05-16 04:39:10] -rw-r--r-- 2 boinc boinc    480010 May 16 01:28 input.tar.gz
[2024-05-16 04:39:10] -rw------- 1 boinc boinc 244045281 May 16 04:38 HITS.pool.root.1
[2024-05-16 04:39:10] -rw------- 1 boinc boinc   1536000 May 16 04:39 result.tar.gz
04:39:12 (2189772): run_atlas exited; CPU time 42567.398007
04:39:12 (2189772): called boinc_finish(0)

</stderr_txt>
]]>

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