Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:34:26 (3680884): wrapper (7.7.26015): starting
17:34:26 (3680884): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 17:34:26] Arguments: --nthreads 4
[2024-05-15 17:34:26] Threads: 4
[2024-05-15 17:34:26] Checking for CVMFS
[2024-05-15 17:34:26] No cvmfs_config command found, will try listing directly
[2024-05-15 17:34:26] CVMFS is ok
[2024-05-15 17:34:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 17:34:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 17:34:26] Further information can be found at the LHC@home message board.
[2024-05-15 17:34:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 17:34:26] Checking for apptainer binary...
[2024-05-15 17:34:26] which: no apptainer in ((null))
[2024-05-15 17:34:26] apptainer is not installed, using version from CVMFS
[2024-05-15 17:34:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 17:34:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot92/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-05-15 17:34:27] apptainer works
[2024-05-15 17:34:27] Set ATHENA_PROC_NUMBER=4
[2024-05-15 17:34:27] Set ATHENA_CORE_NUMBER=4
[2024-05-15 17:34:27] Starting ATLAS job with PandaID=6205828514
[2024-05-15 17:34:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot92/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 21:08:54]  *** The last 200 lines of the pilot log: ***
[2024-05-15 21:08:54] 2024-05-15 19:08:37,062 | INFO     | model: linear, x: [1715787303.0, 1715787364.0, 1715787425.0, 1715787486.0, 1715787547.0, 1715787608.0, 1715787669.0, 1715787730.0, 1715787791.0, 1715787852.0, 1715
[2024-05-15 21:08:54] 2024-05-15 19:08:37,062 | INFO     | sum of square deviations: 2671343110.0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,063 | INFO     | sum of deviations: 95676015104.0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,063 | INFO     | mean x: 1715793525.0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,063 | INFO     | mean y: 2279839.048780488
[2024-05-15 21:08:54] 2024-05-15 19:08:37,063 | INFO     | -- intersect: -61450060969.85816
[2024-05-15 21:08:54] 2024-05-15 19:08:37,063 | INFO     | intersect: -61450060969.85816
[2024-05-15 21:08:54] 2024-05-15 19:08:37,063 | INFO     | chi2: 4.136153855613728
[2024-05-15 21:08:54] 2024-05-15 19:08:37,063 | INFO     | current chi2=4.136153855613728 (change=-0.008068596016101711 %)
[2024-05-15 21:08:54] 2024-05-15 19:08:37,063 | INFO     | right removable region: 204
[2024-05-15 21:08:54] 2024-05-15 19:08:37,064 | INFO     | model: linear, x: [1715787608.0, 1715787669.0, 1715787730.0, 1715787791.0, 1715787852.0, 1715787913.0, 1715787974.0, 1715788035.0, 1715788096.0, 1715788157.0, 1715
[2024-05-15 21:08:54] 2024-05-15 19:08:37,064 | INFO     | sum of square deviations: 2671343110.0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,064 | INFO     | sum of deviations: 49348941073.999985
[2024-05-15 21:08:54] 2024-05-15 19:08:37,064 | INFO     | mean x: 1715793830.0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,064 | INFO     | mean y: 2319326.2
[2024-05-15 21:08:54] 2024-05-15 19:08:37,065 | INFO     | -- intersect: -31694323570.34007
[2024-05-15 21:08:54] 2024-05-15 19:08:37,065 | INFO     | intersect: -31694323570.34007
[2024-05-15 21:08:54] 2024-05-15 19:08:37,065 | INFO     | chi2: 1.6037309818293066
[2024-05-15 21:08:54] 2024-05-15 19:08:37,065 | INFO     | current chi2=1.6037309818293066 (change=61.22338683734886 %)
[2024-05-15 21:08:54] 2024-05-15 19:08:37,065 | INFO     | model: linear, x: [1715787913.0, 1715787974.0, 1715788035.0, 1715788096.0, 1715788157.0, 1715788218.0, 1715788279.0, 1715788340.0, 1715788401.0, 1715788462.0, 1715
[2024-05-15 21:08:54] 2024-05-15 19:08:37,065 | INFO     | sum of square deviations: 2480604650.0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,066 | INFO     | sum of deviations: 9174523220.000002
[2024-05-15 21:08:54] 2024-05-15 19:08:37,066 | INFO     | mean x: 1715793982.5
[2024-05-15 21:08:54] 2024-05-15 19:08:37,066 | INFO     | mean y: 2351450.1
[2024-05-15 21:08:54] 2024-05-15 19:08:37,066 | INFO     | -- intersect: -6343517381.994032
[2024-05-15 21:08:54] 2024-05-15 19:08:37,066 | INFO     | intersect: -6343517381.994032
[2024-05-15 21:08:54] 2024-05-15 19:08:37,066 | INFO     | chi2: 0.04966826423983669
[2024-05-15 21:08:54] 2024-05-15 19:08:37,066 | INFO     | current chi2=0.04966826423983669 (change=96.9029553707828 %)
[2024-05-15 21:08:54] 2024-05-15 19:08:37,066 | INFO     | model: linear, x: [1715788218.0, 1715788279.0, 1715788340.0, 1715788401.0, 1715788462.0, 1715788523.0, 1715788584.0, 1715788645.0, 1715788706.0, 1715788767.0, 1715
[2024-05-15 21:08:54] 2024-05-15 19:08:37,066 | INFO     | sum of square deviations: 2299168690.0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,067 | INFO     | sum of deviations: 3714792701.000001
[2024-05-15 21:08:54] 2024-05-15 19:08:37,067 | INFO     | mean x: 1715794135.0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,067 | INFO     | mean y: 2355986.8615384614
[2024-05-15 21:08:54] 2024-05-15 19:08:37,067 | INFO     | -- intersect: -2769871886.9951687
[2024-05-15 21:08:54] 2024-05-15 19:08:37,067 | INFO     | intersect: -2769871886.9951687
[2024-05-15 21:08:54] 2024-05-15 19:08:37,068 | INFO     | chi2: 0.0013773765422209548
[2024-05-15 21:08:54] 2024-05-15 19:08:37,068 | INFO     | current chi2=0.0013773765422209548 (change=97.22684784076625 %)
[2024-05-15 21:08:54] 2024-05-15 19:08:37,068 | INFO     | model: linear, x: [1715788523.0, 1715788584.0, 1715788645.0, 1715788706.0, 1715788767.0, 1715788828.0, 1715788889.0, 1715788950.0, 1715789011.0, 1715789072.0, 1715
[2024-05-15 21:08:54] 2024-05-15 19:08:37,068 | INFO     | sum of square deviations: 2126802667.5
[2024-05-15 21:08:54] 2024-05-15 19:08:37,068 | INFO     | sum of deviations: 3371971481.0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,069 | INFO     | mean x: 1715794287.5
[2024-05-15 21:08:54] 2024-05-15 19:08:37,069 | INFO     | mean y: 2356289.4631578946
[2024-05-15 21:08:54] 2024-05-15 19:08:37,069 | INFO     | -- intersect: -2717975734.341168
[2024-05-15 21:08:54] 2024-05-15 19:08:37,069 | INFO     | intersect: -2717975734.341168
[2024-05-15 21:08:54] 2024-05-15 19:08:37,069 | INFO     | chi2: 0.001355106128308436
[2024-05-15 21:08:54] 2024-05-15 19:08:37,069 | INFO     | current chi2=0.001355106128308436 (change=1.6168718741651333 %)
[2024-05-15 21:08:54] 2024-05-15 19:08:37,069 | INFO     | left removable region: 40
[2024-05-15 21:08:54] 2024-05-15 19:08:37,069 | INFO     | model: linear, x: [1715789743.0, 1715789804.0, 1715789865.0, 1715789926.0, 1715789987.0, 1715790048.0, 1715790109.0, 1715790170.0, 1715790231.0, 1715790292.0, 1715
[2024-05-15 21:08:54] 2024-05-15 19:08:37,069 | INFO     | sum of square deviations: 1367709365.0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,070 | INFO     | sum of deviations: 3305020534.5
[2024-05-15 21:08:54] 2024-05-15 19:08:37,070 | INFO     | mean x: 1715794714.5
[2024-05-15 21:08:54] 2024-05-15 19:08:37,070 | INFO     | mean y: 2355322.6524390243
[2024-05-15 21:08:54] 2024-05-15 19:08:37,070 | INFO     | -- intersect: -4143800951.1324267
[2024-05-15 21:08:54] 2024-05-15 19:08:37,070 | INFO     | intersect: -4143800951.1324267
[2024-05-15 21:08:54] 2024-05-15 19:08:37,070 | INFO     | chi2: 0.00033871386821280794
[2024-05-15 21:08:54] 2024-05-15 19:08:37,070 | INFO     | -- intersect: -4143800951.1324267
[2024-05-15 21:08:54] 2024-05-15 19:08:37,070 | INFO     | current memory leak: 2.42 B/s (using 164 data points, chi2=0.00)
[2024-05-15 21:08:54] 2024-05-15 19:08:37,070 | INFO     | ..............................
[2024-05-15 21:08:54] 2024-05-15 19:08:37,071 | INFO     | . Timing measurements:
[2024-05-15 21:08:54] 2024-05-15 19:08:37,071 | INFO     | . get job = 0 s
[2024-05-15 21:08:54] 2024-05-15 19:08:37,071 | INFO     | . initial setup = 1 s
[2024-05-15 21:08:54] 2024-05-15 19:08:37,071 | INFO     | . payload setup = 5 s
[2024-05-15 21:08:54] 2024-05-15 19:08:37,071 | INFO     | . stage-in = 0 s
[2024-05-15 21:08:54] 2024-05-15 19:08:37,071 | INFO     | . payload execution = 12808 s
[2024-05-15 21:08:54] 2024-05-15 19:08:37,071 | INFO     | . stage-out = 0 s
[2024-05-15 21:08:54] 2024-05-15 19:08:37,071 | INFO     | . log creation = 0 s
[2024-05-15 21:08:54] 2024-05-15 19:08:37,071 | INFO     | ..............................
[2024-05-15 21:08:54] 2024-05-15 19:08:37,137 | INFO     | 
[2024-05-15 21:08:54] 2024-05-15 19:08:37,137 | INFO     | job summary report
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | --------------------------------------------------
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | PanDA job id: 6205828514
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | task id: 38776146
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | errors: (none)
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | pilot state: finished 
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | transexitcode: 0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | exeerrorcode: 0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | exeerrordiag: 
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | exitcode: 0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | exitmsg: OK
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | cpuconsumptiontime: 48407 s
[2024-05-15 21:08:54] 2024-05-15 19:08:37,138 | INFO     | nevents: 400
[2024-05-15 21:08:54] 2024-05-15 19:08:37,139 | INFO     | neventsw: 0
[2024-05-15 21:08:54] 2024-05-15 19:08:37,139 | INFO     | pid: 3714495
[2024-05-15 21:08:54] 2024-05-15 19:08:37,139 | INFO     | pgrp: 3714495
[2024-05-15 21:08:54] 2024-05-15 19:08:37,139 | INFO     | corecount: 4
[2024-05-15 21:08:54] 2024-05-15 19:08:37,139 | INFO     | event service: False
[2024-05-15 21:08:54] 2024-05-15 19:08:37,139 | INFO     | sizes: {0: 2390665, 1: 2392212, 5: 2392418, 12: 2392474, 12817: 2422345, 12819: 2431511, 12824: 2431625}
[2024-05-15 21:08:54] 2024-05-15 19:08:37,139 | INFO     | --------------------------------------------------
[2024-05-15 21:08:54] 2024-05-15 19:08:37,139 | INFO     | 
[2024-05-15 21:08:54] 2024-05-15 19:08:37,139 | INFO     | executing command: ls -lF /scratch/boinc/var/slot92/slots/1
[2024-05-15 21:08:54] 2024-05-15 19:08:37,165 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,165 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,165 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,165 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,165 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,165 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,165 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,166 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 21:08:54] 2024-05-15 19:08:37,167 | INFO     | job 6205828514 has completed (purged errors)
[2024-05-15 21:08:54] 2024-05-15 19:08:37,167 | INFO     | overall cleanup function is called
[2024-05-15 21:08:54] 2024-05-15 19:08:38,174 | INFO     | --- collectZombieJob: --- 10, [3714495]
[2024-05-15 21:08:54] 2024-05-15 19:08:38,174 | INFO     | zombie collector waiting for pid 3714495
[2024-05-15 21:08:54] 2024-05-15 19:08:38,175 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 21:08:54] 2024-05-15 19:08:39,179 | INFO     | collected zombie processes
[2024-05-15 21:08:54] 2024-05-15 19:08:39,179 | INFO     | will now attempt to kill all subprocesses of pid=3714495
[2024-05-15 21:08:54] 2024-05-15 19:08:39,482 | INFO     | process IDs to be killed: [3714495] (in reverse order)
[2024-05-15 21:08:54] 2024-05-15 19:08:39,667 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 21:08:54] 2024-05-15 19:08:39,668 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 21:08:54] 2024-05-15 19:08:39,681 | INFO     | did not find any defunct processes belonging to 3714495
[2024-05-15 21:08:54] 2024-05-15 19:08:39,690 | INFO     | did not find any defunct processes belonging to 3714495
[2024-05-15 21:08:54] 2024-05-15 19:08:39,691 | INFO     | ready for new job
[2024-05-15 21:08:54] 2024-05-15 19:08:39,691 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 21:08:54] 2024-05-15 19:08:39,692 | INFO     | *************************************
[2024-05-15 21:08:54] 2024-05-15 19:08:39,692 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 21:08:54] 2024-05-15 19:08:39,692 | INFO     | *************************************
[2024-05-15 21:08:54] 2024-05-15 19:08:39,692 | INFO     | 
[2024-05-15 21:08:54] 2024-05-15 19:08:39,697 | INFO     | architecture information:
[2024-05-15 21:08:54] 2024-05-15 19:08:39,697 | INFO     | executing command: cat /etc/os-release
[2024-05-15 21:08:54] 2024-05-15 19:08:39,719 | INFO     | cat /etc/os-release:
[2024-05-15 21:08:54] NAME="CentOS Linux"
[2024-05-15 21:08:54] VERSION="7 (Core)"
[2024-05-15 21:08:54] ID="centos"
[2024-05-15 21:08:54] ID_LIKE="rhel fedora"
[2024-05-15 21:08:54] VERSION_ID="7"
[2024-05-15 21:08:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 21:08:54] ANSI_COLOR="0;31"
[2024-05-15 21:08:54] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 21:08:54] HOME_URL="https://www.centos.org/"
[2024-05-15 21:08:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 21:08:54] 
[2024-05-15 21:08:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 21:08:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 21:08:54] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 21:08:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 21:08:54] 
[2024-05-15 21:08:54] 2024-05-15 19:08:39,720 | INFO     | *************************************
[2024-05-15 21:08:54] 2024-05-15 19:08:40,222 | INFO     | executing command: df -mP /scratch/boinc/var/slot92/slots/1
[2024-05-15 21:08:54] 2024-05-15 19:08:40,249 | INFO     | sufficient remaining disk space (3006263197696 B)
[2024-05-15 21:08:54] 2024-05-15 19:08:40,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 21:08:54] 2024-05-15 19:08:40,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 21:08:54] 2024-05-15 19:08:40,250 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-15 21:08:54] 2024-05-15 19:08:40,250 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 21:08:54] 2024-05-15 19:08:40,250 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 21:08:54] 2024-05-15 19:08:40,250 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 21:08:54] 2024-05-15 19:08:40,250 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 21:08:54] 2024-05-15 19:08:40,747 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-15 21:08:54] 2024-05-15 19:08:40,748 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-15 21:08:54] 2024-05-15 19:08:40,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 21:08:54] 2024-05-15 19:08:40,748 | INFO     | will abort loop
[2024-05-15 21:08:54] 2024-05-15 19:08:40,781 | INFO     | all data control threads have been joined
[2024-05-15 21:08:54] 2024-05-15 19:08:41,036 | INFO     | all job control threads have been joined
[2024-05-15 21:08:54] 2024-05-15 19:08:41,254 | INFO     | [job] retrieve thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:41,300 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:41,367 | INFO     | [data] copytool_in thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:41,445 | INFO     | [job] validate thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:41,488 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:41,717 | INFO     | all payload control threads have been joined
[2024-05-15 21:08:54] 2024-05-15 19:08:41,753 | INFO     | [job] job monitor thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:41,786 | INFO     | [data] control thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:42,041 | INFO     | [job] control thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:42,148 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 21:08:54] 2024-05-15 19:08:42,247 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:42,255 | INFO     | [data] copytool_out thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:42,267 | INFO     | [payload] validate_post thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:42,540 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:42,549 | INFO     | [payload] failed_post thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:42,722 | INFO     | [payload] control thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:43,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 21:08:54] 2024-05-15 19:08:43,153 | INFO     | [job] queue monitor thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:47,061 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 21:08:54] 2024-05-15 19:08:48,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47209853744192)>', '<ExcThread(monitor, started 47210100201216)>']
[2024-05-15 21:08:54] 2024-05-15 19:08:49,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 21:08:54] 2024-05-15 19:08:49,294 | INFO     | [monitor] control thread has ended
[2024-05-15 21:08:54] 2024-05-15 19:08:53,780 | INFO     | all workflow threads have been joined
[2024-05-15 21:08:54] 2024-05-15 19:08:53,780 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 21:08:54] 2024-05-15 19:08:53,781 | INFO     | traces error code: 0
[2024-05-15 21:08:54] 2024-05-15 19:08:53,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 21:08:54] 2024-05-15 19:08:53,898 [wrapper] ==== pilot stdout END ====
[2024-05-15 21:08:54] 2024-05-15 19:08:53,901 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 21:08:54] 2024-05-15 19:08:53,904 [wrapper] pilotpid: 3690284
[2024-05-15 21:08:54] 2024-05-15 19:08:53,906 [wrapper] Pilot exit status: 0
[2024-05-15 21:08:54] 2024-05-15 19:08:53,915 [wrapper] pandaids: 6205828514
[2024-05-15 21:08:54] 2024-05-15 19:08:54,012 [wrapper] cleanup: SIGTERM to supervisor_pilot  617915 3690285
[2024-05-15 21:08:54] 2024-05-15 19:08:54,013 [wrapper] Test setup, not cleaning
[2024-05-15 21:08:54] 2024-05-15 19:08:54,015 [wrapper] ==== wrapper stdout END ====
[2024-05-15 21:08:54] 2024-05-15 19:08:54,017 [wrapper] ==== wrapper stderr END ====
[2024-05-15 21:08:54] 2024-05-15 19:08:54,026 [wrapper] apfmon messages muted
[2024-05-15 21:08:54]  *** Error codes and diagnostics ***
[2024-05-15 21:08:54]     "exeErrorCode": 0,
[2024-05-15 21:08:54]     "exeErrorDiag": "",
[2024-05-15 21:08:54]     "pilotErrorCode": 0,
[2024-05-15 21:08:54]     "pilotErrorDiag": "",
[2024-05-15 21:08:54]  *** Listing of results directory ***
[2024-05-15 21:08:54] total 879528
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc      5633 May 13 12:57 queuedata.json
[2024-05-15 21:08:54] -rwx------ 1 boinc boinc     32251 May 13 12:59 runpilot2-wrapper.sh
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc    467845 May 13 12:59 pilot3.tar.gz
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc       100 May 15 17:34 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 21:08:54] -rwxr-xr-x 1 boinc boinc      7986 May 15 17:34 run_atlas
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc       105 May 15 17:34 job.xml
[2024-05-15 21:08:54] -rw-r--r-- 2 boinc boinc 615230835 May 15 17:34 EVNT.38776140._000212.pool.root.1
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc      6642 May 15 17:34 init_data.xml
[2024-05-15 21:08:54] -rw-r--r-- 2 boinc boinc     17537 May 15 17:34 start_atlas.sh
[2024-05-15 21:08:54] drwxrwx--x 2 boinc boinc      4096 May 15 17:34 shared
[2024-05-15 21:08:54] -rw-r--r-- 2 boinc boinc    479992 May 15 17:34 input.tar.gz
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc         0 May 15 17:34 boinc_lockfile
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc      2612 May 15 17:34 pandaJob.out
[2024-05-15 21:08:54] -rw------- 1 boinc boinc       424 May 15 17:34 setup.sh.local
[2024-05-15 21:08:54] -rw------- 1 boinc boinc   1010542 May 15 17:34 agis_schedconf.cvmfs.json
[2024-05-15 21:08:54] -rw------- 1 boinc boinc   1324701 May 15 17:34 cric_ddmendpoints.json
[2024-05-15 21:08:54] drwx------ 4 boinc boinc      4096 May 15 17:34 pilot3
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc       532 May 15 21:07 boinc_task_state.xml
[2024-05-15 21:08:54] -rw------- 1 boinc boinc 278482839 May 15 21:07 HITS.38776146._005268.pool.root.1
[2024-05-15 21:08:54] -rw------- 1 boinc boinc        95 May 15 21:08 pilot_heartbeat.json
[2024-05-15 21:08:54] -rw------- 1 boinc boinc      1042 May 15 21:08 memory_monitor_summary.json
[2024-05-15 21:08:54] -rw------- 1 boinc boinc         0 May 15 21:08 agis_ddmendpoints.agis.ALL.json
[2024-05-15 21:08:54] -rw------- 1 boinc boinc    331193 May 15 21:08 log.38776146._005268.job.log.tgz.1
[2024-05-15 21:08:54] -rw------- 1 boinc boinc      7718 May 15 21:08 heartbeat.json
[2024-05-15 21:08:54] -rw------- 1 boinc boinc      4531 May 15 21:08 pilotlog.txt
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc        28 May 15 21:08 wrapper_checkpoint.txt
[2024-05-15 21:08:54] -rw------- 1 boinc boinc   1368863 May 15 21:08 log.38776146._005268.job.log.1
[2024-05-15 21:08:54] -rw------- 1 boinc boinc       357 May 15 21:08 output.list
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc       620 May 15 21:08 runtime_log
[2024-05-15 21:08:54] -rw------- 1 boinc boinc   1720320 May 15 21:08 result.tar.gz
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc     11410 May 15 21:08 runtime_log.err
[2024-05-15 21:08:54] -rw------- 1 boinc boinc       657 May 15 21:08 nKFODmBaiQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmuSKKDmIRlcCo.diag
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc      8192 May 15 21:08 boinc_mmap_file
[2024-05-15 21:08:54] -rw-r--r-- 1 boinc boinc     21392 May 15 21:08 stderr.txt
[2024-05-15 21:08:54] HITS file was successfully produced:
[2024-05-15 21:08:54] -rw------- 1 boinc boinc 278482839 May 15 21:07 shared/HITS.pool.root.1
[2024-05-15 21:08:54]  *** Contents of shared directory: ***
[2024-05-15 21:08:54] total 874948
[2024-05-15 21:08:54] -rw-r--r-- 2 boinc boinc 615230835 May 15 17:34 ATLAS.root_0
[2024-05-15 21:08:54] -rw-r--r-- 2 boinc boinc     17537 May 15 17:34 start_atlas.sh
[2024-05-15 21:08:54] -rw-r--r-- 2 boinc boinc    479992 May 15 17:34 input.tar.gz
[2024-05-15 21:08:54] -rw------- 1 boinc boinc 278482839 May 15 21:07 HITS.pool.root.1
[2024-05-15 21:08:54] -rw------- 1 boinc boinc   1720320 May 15 21:08 result.tar.gz
21:08:56 (3680884): run_atlas exited; CPU time 48111.999967
21:08:56 (3680884): called boinc_finish(0)

</stderr_txt>
]]>

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