Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:56:54 (2674432): wrapper (7.7.26015): starting
15:56:54 (2674432): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 15:56:54] Arguments: --nthreads 4
[2024-05-15 15:56:54] Threads: 4
[2024-05-15 15:56:54] Checking for CVMFS
[2024-05-15 15:56:54] No cvmfs_config command found, will try listing directly
[2024-05-15 15:56:54] CVMFS is ok
[2024-05-15 15:56:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 15:56:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 15:56:54] Further information can be found at the LHC@home message board.
[2024-05-15 15:56:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 15:56:54] Checking for apptainer binary...
[2024-05-15 15:56:54] which: no apptainer in ((null))
[2024-05-15 15:56:54] apptainer is not installed, using version from CVMFS
[2024-05-15 15:56:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 15:56:55] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2024-05-15 15:56:55] apptainer works
[2024-05-15 15:56:55] Set ATHENA_PROC_NUMBER=4
[2024-05-15 15:56:55] Set ATHENA_CORE_NUMBER=4
[2024-05-15 15:56:55] Starting ATLAS job with PandaID=6205827991
[2024-05-15 15:56:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:00:26 (2882223): wrapper (7.7.26015): starting
18:00:26 (2882223): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 18:00:26] Arguments: --nthreads 4
[2024-05-15 18:00:26] Threads: 4
[2024-05-15 18:00:26] This job has been restarted, cleaning up previous attempt
[2024-05-15 18:00:26] Checking for CVMFS
[2024-05-15 18:00:26] No cvmfs_config command found, will try listing directly
[2024-05-15 18:00:26] CVMFS is ok
[2024-05-15 18:00:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 18:00:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 18:00:26] Further information can be found at the LHC@home message board.
[2024-05-15 18:00:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 18:00:26] Checking for apptainer binary...
[2024-05-15 18:00:26] which: no apptainer in ((null))
[2024-05-15 18:00:26] apptainer is not installed, using version from CVMFS
[2024-05-15 18:00:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 18:00:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2024-05-15 18:00:26] apptainer works
[2024-05-15 18:00:26] Set ATHENA_PROC_NUMBER=4
[2024-05-15 18:00:26] Set ATHENA_CORE_NUMBER=4
[2024-05-15 18:00:26] Starting ATLAS job with PandaID=6205827991
[2024-05-15 18:00:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 23:39:21]  *** The last 200 lines of the pilot log: ***
[2024-05-15 23:39:21] 2024-05-15 21:38:59,495 | INFO     | model: linear, x: [1715788858.0, 1715788919.0, 1715788980.0, 1715789041.0, 1715789102.0, 1715789163.0, 1715789224.0, 1715789285.0, 1715789346.0, 1715789407.0, 1715
[2024-05-15 23:39:21] 2024-05-15 21:38:59,495 | INFO     | sum of square deviations: 11450045382.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,498 | INFO     | sum of deviations: 149552485673.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,498 | INFO     | mean x: 1715798984.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,499 | INFO     | mean y: 2294015.84984985
[2024-05-15 23:39:21] 2024-05-15 21:38:59,499 | INFO     | -- intersect: -22408272441.449802
[2024-05-15 23:39:21] 2024-05-15 21:38:59,499 | INFO     | intersect: -22408272441.449802
[2024-05-15 23:39:21] 2024-05-15 21:38:59,499 | INFO     | chi2: 4.940987667896371
[2024-05-15 23:39:21] 2024-05-15 21:38:59,500 | INFO     | model: linear, x: [1715788858.0, 1715788919.0, 1715788980.0, 1715789041.0, 1715789102.0, 1715789163.0, 1715789224.0, 1715789285.0, 1715789346.0, 1715789407.0, 1715
[2024-05-15 23:39:21] 2024-05-15 21:38:59,500 | INFO     | sum of square deviations: 10941980042.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,503 | INFO     | sum of deviations: 168145058204.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,504 | INFO     | mean x: 1715798831.5
[2024-05-15 23:39:21] 2024-05-15 21:38:59,504 | INFO     | mean y: 2299519.6402439023
[2024-05-15 23:39:21] 2024-05-15 21:38:59,504 | INFO     | -- intersect: -26364326381.844166
[2024-05-15 23:39:21] 2024-05-15 21:38:59,504 | INFO     | intersect: -26364326381.844166
[2024-05-15 23:39:21] 2024-05-15 21:38:59,505 | INFO     | chi2: 4.156565908095114
[2024-05-15 23:39:21] 2024-05-15 21:38:59,505 | INFO     | current chi2=4.156565908095114 (change=15.875808897439017 %)
[2024-05-15 23:39:21] 2024-05-15 21:38:59,505 | INFO     | right removable region: 327
[2024-05-15 23:39:21] 2024-05-15 21:38:59,506 | INFO     | model: linear, x: [1715789163.0, 1715789224.0, 1715789285.0, 1715789346.0, 1715789407.0, 1715789468.0, 1715789529.0, 1715789590.0, 1715789651.0, 1715789712.0, 1715
[2024-05-15 23:39:21] 2024-05-15 21:38:59,506 | INFO     | sum of square deviations: 10941980042.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,509 | INFO     | sum of deviations: 70775295902.49997
[2024-05-15 23:39:21] 2024-05-15 21:38:59,509 | INFO     | mean x: 1715799136.5
[2024-05-15 23:39:21] 2024-05-15 21:38:59,509 | INFO     | mean y: 2317622.6310975607
[2024-05-15 23:39:21] 2024-05-15 21:38:59,509 | INFO     | -- intersect: -11095874032.710749
[2024-05-15 23:39:21] 2024-05-15 21:38:59,510 | INFO     | intersect: -11095874032.710749
[2024-05-15 23:39:21] 2024-05-15 21:38:59,510 | INFO     | chi2: 2.4309799536081593
[2024-05-15 23:39:21] 2024-05-15 21:38:59,510 | INFO     | current chi2=2.4309799536081593 (change=50.79971623076018 %)
[2024-05-15 23:39:21] 2024-05-15 21:38:59,511 | INFO     | model: linear, x: [1715789468.0, 1715789529.0, 1715789590.0, 1715789651.0, 1715789712.0, 1715789773.0, 1715789834.0, 1715789895.0, 1715789956.0, 1715790017.0, 1715
[2024-05-15 23:39:21] 2024-05-15 21:38:59,511 | INFO     | sum of square deviations: 10449170802.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,514 | INFO     | sum of deviations: 6699892971.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,514 | INFO     | mean x: 1715799289.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,514 | INFO     | mean y: 2337451.210526316
[2024-05-15 23:39:21] 2024-05-15 21:38:59,514 | INFO     | -- intersect: -1097814112.3774278
[2024-05-15 23:39:21] 2024-05-15 21:38:59,515 | INFO     | intersect: -1097814112.3774278
[2024-05-15 23:39:21] 2024-05-15 21:38:59,515 | INFO     | chi2: 0.9051078819683953
[2024-05-15 23:39:21] 2024-05-15 21:38:59,515 | INFO     | current chi2=0.9051078819683953 (change=62.767776812597845 %)
[2024-05-15 23:39:21] 2024-05-15 21:38:59,516 | INFO     | model: linear, x: [1715789773.0, 1715789834.0, 1715789895.0, 1715789956.0, 1715790017.0, 1715790078.0, 1715790139.0, 1715790200.0, 1715790261.0, 1715790322.0, 1715
[2024-05-15 23:39:21] 2024-05-15 21:38:59,516 | INFO     | sum of square deviations: 9971385099.5
[2024-05-15 23:39:21] 2024-05-15 21:38:59,519 | INFO     | sum of deviations: -5794300421.499998
[2024-05-15 23:39:21] 2024-05-15 21:38:59,519 | INFO     | mean x: 1715799441.5
[2024-05-15 23:39:21] 2024-05-15 21:38:59,519 | INFO     | mean y: 2341413.84591195
[2024-05-15 23:39:21] 2024-05-15 21:38:59,519 | INFO     | -- intersect: 999380173.044113
[2024-05-15 23:39:21] 2024-05-15 21:38:59,519 | INFO     | intersect: 999380173.044113
[2024-05-15 23:39:21] 2024-05-15 21:38:59,520 | INFO     | chi2: 0.8149781291979338
[2024-05-15 23:39:21] 2024-05-15 21:38:59,520 | INFO     | current chi2=0.8149781291979338 (change=9.957901656369478 %)
[2024-05-15 23:39:21] 2024-05-15 21:38:59,520 | INFO     | left removable region: 30
[2024-05-15 23:39:21] 2024-05-15 21:38:59,521 | INFO     | model: linear, x: [1715790688.0, 1715790749.0, 1715790810.0, 1715790871.0, 1715790932.0, 1715790993.0, 1715791054.0, 1715791115.0, 1715791176.0, 1715791237.0, 1715
[2024-05-15 23:39:21] 2024-05-15 21:38:59,521 | INFO     | sum of square deviations: 8123493708.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,523 | INFO     | sum of deviations: 8929869178.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,523 | INFO     | mean x: 1715799716.0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,524 | INFO     | mean y: 2349760.2457912457
[2024-05-15 23:39:21] 2024-05-15 21:38:59,524 | INFO     | -- intersect: -1883768152.8438208
[2024-05-15 23:39:21] 2024-05-15 21:38:59,524 | INFO     | intersect: -1883768152.8438208
[2024-05-15 23:39:21] 2024-05-15 21:38:59,524 | INFO     | chi2: 0.0003244904350146538
[2024-05-15 23:39:21] 2024-05-15 21:38:59,524 | INFO     | -- intersect: -1883768152.8438208
[2024-05-15 23:39:21] 2024-05-15 21:38:59,525 | INFO     | current memory leak: 1.10 B/s (using 297 data points, chi2=0.00)
[2024-05-15 23:39:21] 2024-05-15 21:38:59,525 | INFO     | ..............................
[2024-05-15 23:39:21] 2024-05-15 21:38:59,526 | INFO     | . Timing measurements:
[2024-05-15 23:39:21] 2024-05-15 21:38:59,526 | INFO     | . get job = 0 s
[2024-05-15 23:39:21] 2024-05-15 21:38:59,526 | INFO     | . initial setup = 0 s
[2024-05-15 23:39:21] 2024-05-15 21:38:59,526 | INFO     | . payload setup = 5 s
[2024-05-15 23:39:21] 2024-05-15 21:38:59,526 | INFO     | . stage-in = 0 s
[2024-05-15 23:39:21] 2024-05-15 21:38:59,526 | INFO     | . payload execution = 20272 s
[2024-05-15 23:39:21] 2024-05-15 21:38:59,526 | INFO     | . stage-out = 0 s
[2024-05-15 23:39:21] 2024-05-15 21:38:59,526 | INFO     | . log creation = 0 s
[2024-05-15 23:39:21] 2024-05-15 21:38:59,526 | INFO     | ..............................
[2024-05-15 23:39:21] 2024-05-15 21:38:59,644 | WARNING  | process 2893325 is no longer using CPU - aborting
[2024-05-15 23:39:21] 2024-05-15 21:38:59,645 | INFO     | aborting job monitoring since job object (job id=6205827991) has expired
[2024-05-15 23:39:21] 2024-05-15 21:38:59,685 | INFO     | 
[2024-05-15 23:39:21] 2024-05-15 21:38:59,685 | INFO     | job summary report
[2024-05-15 23:39:21] 2024-05-15 21:38:59,685 | INFO     | --------------------------------------------------
[2024-05-15 23:39:21] 2024-05-15 21:38:59,685 | INFO     | PanDA job id: 6205827991
[2024-05-15 23:39:21] 2024-05-15 21:38:59,685 | INFO     | task id: 38776146
[2024-05-15 23:39:21] 2024-05-15 21:38:59,685 | INFO     | errors: (none)
[2024-05-15 23:39:21] 2024-05-15 21:38:59,685 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 23:39:21] 2024-05-15 21:38:59,686 | INFO     | pilot state: finished 
[2024-05-15 23:39:21] 2024-05-15 21:38:59,686 | INFO     | transexitcode: 0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,686 | INFO     | exeerrorcode: 0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,686 | INFO     | exeerrordiag: 
[2024-05-15 23:39:21] 2024-05-15 21:38:59,686 | INFO     | exitcode: 0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,686 | INFO     | exitmsg: OK
[2024-05-15 23:39:21] 2024-05-15 21:38:59,686 | INFO     | cpuconsumptiontime: 77937 s
[2024-05-15 23:39:21] 2024-05-15 21:38:59,687 | INFO     | nevents: 400
[2024-05-15 23:39:21] 2024-05-15 21:38:59,687 | INFO     | neventsw: 0
[2024-05-15 23:39:21] 2024-05-15 21:38:59,687 | INFO     | pid: 2893325
[2024-05-15 23:39:21] 2024-05-15 21:38:59,687 | INFO     | pgrp: 2893325
[2024-05-15 23:39:21] 2024-05-15 21:38:59,687 | INFO     | corecount: 4
[2024-05-15 23:39:21] 2024-05-15 21:38:59,687 | INFO     | event service: False
[2024-05-15 23:39:21] 2024-05-15 21:38:59,687 | INFO     | sizes: {0: 2396633, 3: 2396839, 11: 2396867, 20281: 2430191, 20283: 2439173, 20285: 2439229, 20290: 2439527}
[2024-05-15 23:39:21] 2024-05-15 21:38:59,687 | INFO     | --------------------------------------------------
[2024-05-15 23:39:21] 2024-05-15 21:38:59,688 | INFO     | 
[2024-05-15 23:39:21] 2024-05-15 21:38:59,688 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/1
[2024-05-15 23:39:21] 2024-05-15 21:38:59,711 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,711 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,711 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,711 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,712 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,712 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,712 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,712 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,712 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,712 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,713 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,713 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,713 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,713 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,713 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,713 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,713 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 23:39:21] 2024-05-15 21:38:59,713 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,713 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 23:39:21] 2024-05-15 21:38:59,714 | INFO     | job 6205827991 has completed (purged errors)
[2024-05-15 23:39:21] 2024-05-15 21:38:59,714 | INFO     | overall cleanup function is called
[2024-05-15 23:39:21] 2024-05-15 21:39:00,721 | INFO     | --- collectZombieJob: --- 10, [2893325]
[2024-05-15 23:39:21] 2024-05-15 21:39:00,721 | INFO     | zombie collector waiting for pid 2893325
[2024-05-15 23:39:21] 2024-05-15 21:39:00,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 23:39:21] 2024-05-15 21:39:01,726 | INFO     | collected zombie processes
[2024-05-15 23:39:21] 2024-05-15 21:39:01,726 | INFO     | will now attempt to kill all subprocesses of pid=2893325
[2024-05-15 23:39:21] 2024-05-15 21:39:01,876 | INFO     | process IDs to be killed: [2893325] (in reverse order)
[2024-05-15 23:39:21] 2024-05-15 21:39:01,986 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 23:39:21] 2024-05-15 21:39:01,986 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 23:39:21] 2024-05-15 21:39:01,994 | INFO     | did not find any defunct processes belonging to 2893325
[2024-05-15 23:39:21] 2024-05-15 21:39:02,000 | INFO     | did not find any defunct processes belonging to 2893325
[2024-05-15 23:39:21] 2024-05-15 21:39:02,001 | INFO     | ready for new job
[2024-05-15 23:39:21] 2024-05-15 21:39:02,001 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 23:39:21] 2024-05-15 21:39:02,003 | INFO     | *************************************
[2024-05-15 23:39:21] 2024-05-15 21:39:02,003 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 23:39:21] 2024-05-15 21:39:02,003 | INFO     | *************************************
[2024-05-15 23:39:21] 2024-05-15 21:39:02,004 | INFO     | 
[2024-05-15 23:39:21] 2024-05-15 21:39:02,006 | INFO     | architecture information:
[2024-05-15 23:39:21] 2024-05-15 21:39:02,006 | INFO     | executing command: cat /etc/os-release
[2024-05-15 23:39:21] 2024-05-15 21:39:02,020 | INFO     | cat /etc/os-release:
[2024-05-15 23:39:21] NAME="CentOS Linux"
[2024-05-15 23:39:21] VERSION="7 (Core)"
[2024-05-15 23:39:21] ID="centos"
[2024-05-15 23:39:21] ID_LIKE="rhel fedora"
[2024-05-15 23:39:21] VERSION_ID="7"
[2024-05-15 23:39:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 23:39:21] ANSI_COLOR="0;31"
[2024-05-15 23:39:21] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 23:39:21] HOME_URL="https://www.centos.org/"
[2024-05-15 23:39:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 23:39:21] 
[2024-05-15 23:39:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 23:39:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 23:39:21] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 23:39:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 23:39:21] 
[2024-05-15 23:39:21] 2024-05-15 21:39:02,021 | INFO     | *************************************
[2024-05-15 23:39:21] 2024-05-15 21:39:02,523 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/1
[2024-05-15 23:39:21] 2024-05-15 21:39:02,541 | INFO     | sufficient remaining disk space (1615123709952 B)
[2024-05-15 23:39:21] 2024-05-15 21:39:02,544 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 23:39:21] 2024-05-15 21:39:02,544 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 23:39:21] 2024-05-15 21:39:02,545 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-15 23:39:21] 2024-05-15 21:39:02,545 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 23:39:21] 2024-05-15 21:39:02,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 23:39:21] 2024-05-15 21:39:02,545 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 23:39:21] 2024-05-15 21:39:02,634 | INFO     | all payload control threads have been joined
[2024-05-15 23:39:21] 2024-05-15 21:39:02,837 | INFO     | all data control threads have been joined
[2024-05-15 23:39:21] 2024-05-15 21:39:03,152 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 23:39:21] 2024-05-15 21:39:03,152 | INFO     | aborting loop
[2024-05-15 23:39:21] 2024-05-15 21:39:03,242 | INFO     | all job control threads have been joined
[2024-05-15 23:39:21] 2024-05-15 21:39:03,306 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 23:39:21] 2024-05-15 21:39:03,549 | INFO     | [job] retrieve thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:03,639 | INFO     | [payload] control thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:03,842 | INFO     | [data] control thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:04,009 | INFO     | [payload] failed_post thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:04,044 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:04,069 | INFO     | [job] validate thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:04,155 | INFO     | [job] job monitor thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:04,248 | INFO     | [job] control thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:04,409 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:04,634 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 23:39:21] 2024-05-15 21:39:04,697 | INFO     | [payload] validate_post thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:05,020 | INFO     | [data] copytool_in thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:05,049 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:05,311 | INFO     | [data] copytool_out thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:05,639 | INFO     | [job] queue monitor thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:05,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 23:39:21] 2024-05-15 21:39:09,725 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:13,026 | INFO     | job.realtimelogging is not enabled
[2024-05-15 23:39:21] 2024-05-15 21:39:14,031 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 23:39:21] 2024-05-15 21:39:15,400 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47551423517760)>', '<ExcThread(monitor, started 47551590237952)>']
[2024-05-15 23:39:21] 2024-05-15 21:39:15,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 23:39:21] 2024-05-15 21:39:15,603 | INFO     | [monitor] control thread has ended
[2024-05-15 23:39:21] 2024-05-15 21:39:20,426 | INFO     | all workflow threads have been joined
[2024-05-15 23:39:21] 2024-05-15 21:39:20,426 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 23:39:21] 2024-05-15 21:39:20,426 | INFO     | traces error code: 0
[2024-05-15 23:39:21] 2024-05-15 21:39:20,426 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 23:39:21] 2024-05-15 21:39:20,489 [wrapper] ==== pilot stdout END ====
[2024-05-15 23:39:21] 2024-05-15 21:39:20,491 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 23:39:21] 2024-05-15 21:39:20,493 [wrapper] pilotpid: 2886451
[2024-05-15 23:39:21] 2024-05-15 21:39:20,495 [wrapper] Pilot exit status: 0
[2024-05-15 23:39:21] 2024-05-15 21:39:20,513 [wrapper] pandaids: 6205827991 6205827991
[2024-05-15 23:39:21] 2024-05-15 21:39:20,573 [wrapper] cleanup: SIGTERM to supervisor_pilot 3404457 2886452
[2024-05-15 23:39:21] 2024-05-15 21:39:20,575 [wrapper] Test setup, not cleaning
[2024-05-15 23:39:21] 2024-05-15 21:39:20,577 [wrapper] ==== wrapper stdout END ====
[2024-05-15 23:39:21] 2024-05-15 21:39:20,578 [wrapper] ==== wrapper stderr END ====
[2024-05-15 23:39:21] 2024-05-15 21:39:20,582 [wrapper] apfmon messages muted
[2024-05-15 23:39:21]  *** Error codes and diagnostics ***
[2024-05-15 23:39:21]     "exeErrorCode": 0,
[2024-05-15 23:39:21]     "exeErrorDiag": "",
[2024-05-15 23:39:21]     "pilotErrorCode": 0,
[2024-05-15 23:39:21]     "pilotErrorDiag": "",
[2024-05-15 23:39:21]  *** Listing of results directory ***
[2024-05-15 23:39:21] total 1486604
[2024-05-15 23:39:21] drwx------ 4 boinc boinc      4096 May  8 14:24 pilot3
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc    467845 May 13 12:35 pilot3.tar.gz
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc      5633 May 13 12:45 queuedata.json
[2024-05-15 23:39:21] -rwx------ 1 boinc boinc     32251 May 13 12:46 runpilot2-wrapper.sh
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc       100 May 15 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 23:39:21] -rwxr-xr-x 1 boinc boinc      7986 May 15 15:56 run_atlas
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc       105 May 15 15:56 job.xml
[2024-05-15 23:39:21] -rw-r--r-- 3 boinc boinc 618061938 May 15 15:56 EVNT.38776140._000198.pool.root.1
[2024-05-15 23:39:21] -rw-r--r-- 3 boinc boinc 618061938 May 15 15:56 ATLAS.root_0
[2024-05-15 23:39:21] -rw-r--r-- 2 boinc boinc     17537 May 15 15:56 start_atlas.sh
[2024-05-15 23:39:21] drwxrwx--x 2 boinc boinc      4096 May 15 15:56 shared
[2024-05-15 23:39:21] -rw-r--r-- 2 boinc boinc    480001 May 15 15:56 input.tar.gz
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc         0 May 15 15:56 boinc_lockfile
[2024-05-15 23:39:21] -rw------- 1 boinc boinc   1325758 May 15 15:57 cric_ddmendpoints.json
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc      2613 May 15 18:00 pandaJob.out
[2024-05-15 23:39:21] -rw------- 1 boinc boinc       424 May 15 18:00 setup.sh.local
[2024-05-15 23:39:21] -rw------- 1 boinc boinc   1010542 May 15 18:00 agis_schedconf.cvmfs.json
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc      6465 May 15 21:58 init_data.xml
[2024-05-15 23:39:21] -rw------- 1 boinc boinc 276941691 May 15 23:38 HITS.38776146._004946.pool.root.1
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc       532 May 15 23:38 boinc_task_state.xml
[2024-05-15 23:39:21] -rw------- 1 boinc boinc        97 May 15 23:38 pilot_heartbeat.json
[2024-05-15 23:39:21] -rw------- 1 boinc boinc      1057 May 15 23:38 memory_monitor_summary.json
[2024-05-15 23:39:21] -rw------- 1 boinc boinc         0 May 15 23:38 agis_ddmendpoints.agis.ALL.json
[2024-05-15 23:39:21] -rw------- 1 boinc boinc    422916 May 15 23:38 log.38776146._004946.job.log.tgz.1
[2024-05-15 23:39:21] -rw------- 1 boinc boinc      7773 May 15 23:38 heartbeat.json
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc        28 May 15 23:39 wrapper_checkpoint.txt
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc      8192 May 15 23:39 boinc_mmap_file
[2024-05-15 23:39:21] -rw------- 1 boinc boinc      4417 May 15 23:39 pilotlog.txt
[2024-05-15 23:39:21] -rw------- 1 boinc boinc   2419547 May 15 23:39 log.38776146._004946.job.log.1
[2024-05-15 23:39:21] -rw------- 1 boinc boinc       357 May 15 23:39 output.list
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc       620 May 15 23:39 runtime_log
[2024-05-15 23:39:21] -rw------- 1 boinc boinc   2856960 May 15 23:39 result.tar.gz
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc     11487 May 15 23:39 runtime_log.err
[2024-05-15 23:39:21] -rw------- 1 boinc boinc       771 May 15 23:39 4ZTKDmfNiQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDm3QKKDmcpmhNn.diag
[2024-05-15 23:39:21] -rw-r--r-- 1 boinc boinc     23299 May 15 23:39 stderr.txt
[2024-05-15 23:39:21] HITS file was successfully produced:
[2024-05-15 23:39:21] -rw------- 1 boinc boinc 276941691 May 15 23:38 shared/HITS.pool.root.1
[2024-05-15 23:39:21]  *** Contents of shared directory: ***
[2024-05-15 23:39:21] total 877324
[2024-05-15 23:39:21] -rw-r--r-- 3 boinc boinc 618061938 May 15 15:56 ATLAS.root_0
[2024-05-15 23:39:21] -rw-r--r-- 2 boinc boinc     17537 May 15 15:56 start_atlas.sh
[2024-05-15 23:39:21] -rw-r--r-- 2 boinc boinc    480001 May 15 15:56 input.tar.gz
[2024-05-15 23:39:21] -rw------- 1 boinc boinc 276941691 May 15 23:38 HITS.pool.root.1
[2024-05-15 23:39:21] -rw------- 1 boinc boinc   2856960 May 15 23:39 result.tar.gz
23:39:23 (2882223): run_atlas exited; CPU time 77632.126717
23:39:23 (2882223): called boinc_finish(0)

</stderr_txt>
]]>

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