Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:29:49 (3950812): wrapper (7.7.26015): starting
10:29:49 (3950812): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 10:29:49] Arguments: --nthreads 4
[2024-05-15 10:29:49] Threads: 4
[2024-05-15 10:29:49] Checking for CVMFS
[2024-05-15 10:29:49] No cvmfs_config command found, will try listing directly
[2024-05-15 10:29:49] CVMFS is ok
[2024-05-15 10:29:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 10:29:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 10:29:49] Further information can be found at the LHC@home message board.
[2024-05-15 10:29:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 10:29:49] Checking for apptainer binary...
[2024-05-15 10:29:49] which: no apptainer in ((null))
[2024-05-15 10:29:49] apptainer is not installed, using version from CVMFS
[2024-05-15 10:29:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 10:29:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut32.grid.cesnet.cz
[2024-05-15 10:29:49] apptainer works
[2024-05-15 10:29:50] Set ATHENA_PROC_NUMBER=4
[2024-05-15 10:29:50] Set ATHENA_CORE_NUMBER=4
[2024-05-15 10:29:50] Starting ATLAS job with PandaID=6205826933
[2024-05-15 10:29:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 15:38:17]  *** The last 200 lines of the pilot log: ***
[2024-05-15 15:38:17] 2024-05-15 13:37:57,198 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-15 15:38:17] 2024-05-15 13:37:57,198 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-15 15:38:17] 2024-05-15 13:37:57,204 | INFO     | fitting pss+swap vs Time
[2024-05-15 15:38:17] 2024-05-15 13:37:57,204 | INFO     | model: linear, x: [1715761820.0, 1715761881.0, 1715761942.0, 1715762003.0, 1715762064.0, 1715762125.0, 1715762186.0, 1715762247.0, 1715762308.0, 1715762369.0, 1715
[2024-05-15 15:38:17] 2024-05-15 13:37:57,205 | INFO     | sum of square deviations: 8625843592.0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,207 | INFO     | sum of deviations: 107256250590.0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,208 | INFO     | mean x: 1715771031.0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,208 | INFO     | mean y: 2315632.379537954
[2024-05-15 15:38:17] 2024-05-15 13:37:57,208 | INFO     | -- intersect: -21332080904.403698
[2024-05-15 15:38:17] 2024-05-15 13:37:57,208 | INFO     | intersect: -21332080904.403698
[2024-05-15 15:38:17] 2024-05-15 13:37:57,209 | INFO     | chi2: 4.920542391133976
[2024-05-15 15:38:17] 2024-05-15 13:37:57,209 | INFO     | model: linear, x: [1715761820.0, 1715761881.0, 1715761942.0, 1715762003.0, 1715762064.0, 1715762125.0, 1715762186.0, 1715762247.0, 1715762308.0, 1715762369.0, 1715
[2024-05-15 15:38:17] 2024-05-15 13:37:57,209 | INFO     | sum of square deviations: 8205826414.5
[2024-05-15 15:38:17] 2024-05-15 13:37:57,212 | INFO     | sum of deviations: 124379581360.49998
[2024-05-15 15:38:17] 2024-05-15 13:37:57,212 | INFO     | mean x: 1715770878.5
[2024-05-15 15:38:17] 2024-05-15 13:37:57,212 | INFO     | mean y: 2321755.3322147653
[2024-05-15 15:38:17] 2024-05-15 13:37:57,212 | INFO     | -- intersect: -26004426718.078026
[2024-05-15 15:38:17] 2024-05-15 13:37:57,212 | INFO     | intersect: -26004426718.078026
[2024-05-15 15:38:17] 2024-05-15 13:37:57,213 | INFO     | chi2: 4.13928066975829
[2024-05-15 15:38:17] 2024-05-15 13:37:57,213 | INFO     | current chi2=4.13928066975829 (change=15.877552905212111 %)
[2024-05-15 15:38:17] 2024-05-15 13:37:57,213 | INFO     | right removable region: 297
[2024-05-15 15:38:17] 2024-05-15 13:37:57,213 | INFO     | model: linear, x: [1715762125.0, 1715762186.0, 1715762247.0, 1715762308.0, 1715762369.0, 1715762430.0, 1715762491.0, 1715762552.0, 1715762613.0, 1715762674.0, 1715
[2024-05-15 15:38:17] 2024-05-15 13:37:57,214 | INFO     | sum of square deviations: 8205826414.5
[2024-05-15 15:38:17] 2024-05-15 13:37:57,216 | INFO     | sum of deviations: 35764809563.500015
[2024-05-15 15:38:17] 2024-05-15 13:37:57,217 | INFO     | mean x: 1715771183.5
[2024-05-15 15:38:17] 2024-05-15 13:37:57,217 | INFO     | mean y: 2341539.600671141
[2024-05-15 15:38:17] 2024-05-15 13:37:57,217 | INFO     | -- intersect: -7475787600.931191
[2024-05-15 15:38:17] 2024-05-15 13:37:57,217 | INFO     | intersect: -7475787600.931191
[2024-05-15 15:38:17] 2024-05-15 13:37:57,217 | INFO     | chi2: 2.416412015596539
[2024-05-15 15:38:17] 2024-05-15 13:37:57,218 | INFO     | current chi2=2.416412015596539 (change=50.89134848323786 %)
[2024-05-15 15:38:17] 2024-05-15 13:37:57,218 | INFO     | model: linear, x: [1715762430.0, 1715762491.0, 1715762552.0, 1715762613.0, 1715762674.0, 1715762735.0, 1715762796.0, 1715762857.0, 1715762918.0, 1715762979.0, 1715
[2024-05-15 15:38:17] 2024-05-15 13:37:57,218 | INFO     | sum of square deviations: 7799669962.0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,221 | INFO     | sum of deviations: -21441637677.0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,221 | INFO     | mean x: 1715771336.0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,221 | INFO     | mean y: 2363019.4402730376
[2024-05-15 15:38:17] 2024-05-15 13:37:57,221 | INFO     | -- intersect: 4719094304.524131
[2024-05-15 15:38:17] 2024-05-15 13:37:57,221 | INFO     | intersect: 4719094304.524131
[2024-05-15 15:38:17] 2024-05-15 13:37:57,222 | INFO     | chi2: 0.9375993648965203
[2024-05-15 15:38:17] 2024-05-15 13:37:57,222 | INFO     | current chi2=0.9375993648965203 (change=61.198696296622444 %)
[2024-05-15 15:38:17] 2024-05-15 13:37:57,223 | INFO     | model: linear, x: [1715762735.0, 1715762796.0, 1715762857.0, 1715762918.0, 1715762979.0, 1715763040.0, 1715763101.0, 1715763162.0, 1715763223.0, 1715763284.0, 1715
[2024-05-15 15:38:17] 2024-05-15 13:37:57,223 | INFO     | sum of square deviations: 7407141672.0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,225 | INFO     | sum of deviations: -32112450088.0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,225 | INFO     | mean x: 1715771488.5
[2024-05-15 15:38:17] 2024-05-15 13:37:57,226 | INFO     | mean y: 2367132.7083333335
[2024-05-15 15:38:17] 2024-05-15 13:37:57,226 | INFO     | -- intersect: 7440813530.344579
[2024-05-15 15:38:17] 2024-05-15 13:37:57,226 | INFO     | intersect: 7440813530.344579
[2024-05-15 15:38:17] 2024-05-15 13:37:57,226 | INFO     | chi2: 0.8426875316183913
[2024-05-15 15:38:17] 2024-05-15 13:37:57,227 | INFO     | current chi2=0.8426875316183913 (change=10.122855969362151 %)
[2024-05-15 15:38:17] 2024-05-15 13:37:57,227 | INFO     | left removable region: 30
[2024-05-15 15:38:17] 2024-05-15 13:37:57,227 | INFO     | model: linear, x: [1715763650.0, 1715763711.0, 1715763772.0, 1715763833.0, 1715763894.0, 1715763955.0, 1715764016.0, 1715764077.0, 1715764138.0, 1715764199.0, 1715
[2024-05-15 15:38:17] 2024-05-15 13:37:57,227 | INFO     | sum of square deviations: 5902093918.0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,229 | INFO     | sum of deviations: -8743436525.000002
[2024-05-15 15:38:17] 2024-05-15 13:37:57,230 | INFO     | mean x: 1715771763.0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,230 | INFO     | mean y: 2372331.925093633
[2024-05-15 15:38:17] 2024-05-15 13:37:57,230 | INFO     | -- intersect: 2544138306.7812476
[2024-05-15 15:38:17] 2024-05-15 13:37:57,230 | INFO     | intersect: 2544138306.7812476
[2024-05-15 15:38:17] 2024-05-15 13:37:57,230 | INFO     | chi2: 0.02444503639881504
[2024-05-15 15:38:17] 2024-05-15 13:37:57,231 | INFO     | -- intersect: 2544138306.7812476
[2024-05-15 15:38:17] 2024-05-15 13:37:57,231 | INFO     | current memory leak: -1.48 B/s (using 267 data points, chi2=0.02)
[2024-05-15 15:38:17] 2024-05-15 13:37:57,231 | INFO     | ..............................
[2024-05-15 15:38:17] 2024-05-15 13:37:57,232 | INFO     | . Timing measurements:
[2024-05-15 15:38:17] 2024-05-15 13:37:57,232 | INFO     | . get job = 0 s
[2024-05-15 15:38:17] 2024-05-15 13:37:57,232 | INFO     | . initial setup = 1 s
[2024-05-15 15:38:17] 2024-05-15 13:37:57,232 | INFO     | . payload setup = 4 s
[2024-05-15 15:38:17] 2024-05-15 13:37:57,232 | INFO     | . stage-in = 0 s
[2024-05-15 15:38:17] 2024-05-15 13:37:57,232 | INFO     | . payload execution = 18448 s
[2024-05-15 15:38:17] 2024-05-15 13:37:57,232 | INFO     | . stage-out = 0 s
[2024-05-15 15:38:17] 2024-05-15 13:37:57,232 | INFO     | . log creation = 0 s
[2024-05-15 15:38:17] 2024-05-15 13:37:57,233 | INFO     | ..............................
[2024-05-15 15:38:17] 2024-05-15 13:37:57,295 | INFO     | 
[2024-05-15 15:38:17] 2024-05-15 13:37:57,295 | INFO     | job summary report
[2024-05-15 15:38:17] 2024-05-15 13:37:57,295 | INFO     | --------------------------------------------------
[2024-05-15 15:38:17] 2024-05-15 13:37:57,295 | INFO     | PanDA job id: 6205826933
[2024-05-15 15:38:17] 2024-05-15 13:37:57,295 | INFO     | task id: 38776146
[2024-05-15 15:38:17] 2024-05-15 13:37:57,295 | INFO     | errors: (none)
[2024-05-15 15:38:17] 2024-05-15 13:37:57,295 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 15:38:17] 2024-05-15 13:37:57,295 | INFO     | pilot state: finished 
[2024-05-15 15:38:17] 2024-05-15 13:37:57,295 | INFO     | transexitcode: 0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,295 | INFO     | exeerrorcode: 0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | exeerrordiag: 
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | exitcode: 0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | exitmsg: OK
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | cpuconsumptiontime: 70802 s
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | nevents: 400
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | neventsw: 0
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | pid: 3968782
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | pgrp: 3968782
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | corecount: 4
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | event service: False
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | sizes: {0: 2394492, 3: 2394698, 11: 2394726, 18456: 2427516, 18459: 2436498, 18462: 2436554, 18466: 2436852}
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | --------------------------------------------------
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | 
[2024-05-15 15:38:17] 2024-05-15 13:37:57,296 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/1
[2024-05-15 15:38:17] 2024-05-15 13:37:57,313 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,313 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,313 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,313 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,313 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,313 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,313 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 15:38:17] 2024-05-15 13:37:57,314 | INFO     | job 6205826933 has completed (purged errors)
[2024-05-15 15:38:17] 2024-05-15 13:37:57,315 | INFO     | overall cleanup function is called
[2024-05-15 15:38:17] 2024-05-15 13:37:58,321 | INFO     | --- collectZombieJob: --- 10, [3968782]
[2024-05-15 15:38:17] 2024-05-15 13:37:58,322 | INFO     | zombie collector waiting for pid 3968782
[2024-05-15 15:38:17] 2024-05-15 13:37:58,322 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 15:38:17] 2024-05-15 13:37:59,326 | INFO     | collected zombie processes
[2024-05-15 15:38:17] 2024-05-15 13:37:59,327 | INFO     | will now attempt to kill all subprocesses of pid=3968782
[2024-05-15 15:38:17] 2024-05-15 13:37:59,437 | INFO     | process IDs to be killed: [3968782] (in reverse order)
[2024-05-15 15:38:17] 2024-05-15 13:37:59,537 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 15:38:17] 2024-05-15 13:37:59,537 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 15:38:17] 2024-05-15 13:37:59,544 | INFO     | did not find any defunct processes belonging to 3968782
[2024-05-15 15:38:17] 2024-05-15 13:37:59,550 | INFO     | did not find any defunct processes belonging to 3968782
[2024-05-15 15:38:17] 2024-05-15 13:37:59,550 | INFO     | ready for new job
[2024-05-15 15:38:17] 2024-05-15 13:37:59,550 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 15:38:17] 2024-05-15 13:37:59,552 | INFO     | *************************************
[2024-05-15 15:38:17] 2024-05-15 13:37:59,552 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 15:38:17] 2024-05-15 13:37:59,552 | INFO     | *************************************
[2024-05-15 15:38:17] 2024-05-15 13:37:59,552 | INFO     | 
[2024-05-15 15:38:17] 2024-05-15 13:37:59,554 | INFO     | architecture information:
[2024-05-15 15:38:17] 2024-05-15 13:37:59,554 | INFO     | executing command: cat /etc/os-release
[2024-05-15 15:38:17] 2024-05-15 13:37:59,572 | INFO     | cat /etc/os-release:
[2024-05-15 15:38:17] NAME="CentOS Linux"
[2024-05-15 15:38:17] VERSION="7 (Core)"
[2024-05-15 15:38:17] ID="centos"
[2024-05-15 15:38:17] ID_LIKE="rhel fedora"
[2024-05-15 15:38:17] VERSION_ID="7"
[2024-05-15 15:38:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 15:38:17] ANSI_COLOR="0;31"
[2024-05-15 15:38:17] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 15:38:17] HOME_URL="https://www.centos.org/"
[2024-05-15 15:38:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 15:38:17] 
[2024-05-15 15:38:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 15:38:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 15:38:17] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 15:38:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 15:38:17] 
[2024-05-15 15:38:17] 2024-05-15 13:37:59,573 | INFO     | *************************************
[2024-05-15 15:38:17] 2024-05-15 13:38:00,076 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/1
[2024-05-15 15:38:17] 2024-05-15 13:38:00,091 | INFO     | sufficient remaining disk space (1619056918528 B)
[2024-05-15 15:38:17] 2024-05-15 13:38:00,092 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 15:38:17] 2024-05-15 13:38:00,092 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 15:38:17] 2024-05-15 13:38:00,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 15:38:17] 2024-05-15 13:38:00,671 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 15:38:17] 2024-05-15 13:38:00,671 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 15:38:17] 2024-05-15 13:38:00,672 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 15:38:17] 2024-05-15 13:38:00,834 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 15:38:17] 2024-05-15 13:38:00,986 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 15:38:17] 2024-05-15 13:38:00,987 | INFO     | aborting loop
[2024-05-15 15:38:17] 2024-05-15 13:38:01,001 | INFO     | all data control threads have been joined
[2024-05-15 15:38:17] 2024-05-15 13:38:01,044 | INFO     | all job control threads have been joined
[2024-05-15 15:38:17] 2024-05-15 13:38:01,053 | INFO     | all payload control threads have been joined
[2024-05-15 15:38:17] 2024-05-15 13:38:01,097 | INFO     | [job] retrieve thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:01,173 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:01,207 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:01,336 | INFO     | [payload] failed_post thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:01,442 | INFO     | [data] copytool_in thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:01,737 | INFO     | [payload] validate_post thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:01,909 | INFO     | [job] validate thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:01,931 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:01,992 | INFO     | [job] job monitor thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:02,006 | INFO     | [data] control thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:02,046 | INFO     | [job] control thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:02,058 | INFO     | [payload] control thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:02,304 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 15:38:17] 2024-05-15 13:38:02,839 | INFO     | [data] copytool_out thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:03,309 | INFO     | [job] queue monitor thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:04,098 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:10,257 | INFO     | job.realtimelogging is not enabled
[2024-05-15 15:38:17] 2024-05-15 13:38:11,263 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 15:38:17] 2024-05-15 13:38:11,552 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47152826008640)>', '<ExcThread(monitor, started 47152997259008)>']
[2024-05-15 15:38:17] 2024-05-15 13:38:11,726 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 15:38:17] 2024-05-15 13:38:11,727 | INFO     | [monitor] control thread has ended
[2024-05-15 15:38:17] 2024-05-15 13:38:16,577 | INFO     | all workflow threads have been joined
[2024-05-15 15:38:17] 2024-05-15 13:38:16,578 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 15:38:17] 2024-05-15 13:38:16,578 | INFO     | traces error code: 0
[2024-05-15 15:38:17] 2024-05-15 13:38:16,578 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 15:38:17] 2024-05-15 13:38:16,658 [wrapper] ==== pilot stdout END ====
[2024-05-15 15:38:17] 2024-05-15 13:38:16,661 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 15:38:17] 2024-05-15 13:38:16,663 [wrapper] pilotpid: 3955080
[2024-05-15 15:38:17] 2024-05-15 13:38:16,665 [wrapper] Pilot exit status: 0
[2024-05-15 15:38:17] 2024-05-15 13:38:16,675 [wrapper] pandaids: 6205826933
[2024-05-15 15:38:17] 2024-05-15 13:38:16,717 [wrapper] cleanup: SIGTERM to supervisor_pilot  211208 3955081
[2024-05-15 15:38:17] 2024-05-15 13:38:16,719 [wrapper] Test setup, not cleaning
[2024-05-15 15:38:17] 2024-05-15 13:38:16,721 [wrapper] ==== wrapper stdout END ====
[2024-05-15 15:38:17] 2024-05-15 13:38:16,723 [wrapper] ==== wrapper stderr END ====
[2024-05-15 15:38:17] 2024-05-15 13:38:16,727 [wrapper] apfmon messages muted
[2024-05-15 15:38:17]  *** Error codes and diagnostics ***
[2024-05-15 15:38:17]     "exeErrorCode": 0,
[2024-05-15 15:38:17]     "exeErrorDiag": "",
[2024-05-15 15:38:17]     "pilotErrorCode": 0,
[2024-05-15 15:38:17]     "pilotErrorDiag": "",
[2024-05-15 15:38:17]  *** Listing of results directory ***
[2024-05-15 15:38:17] total 881744
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc    467845 May 13 12:02 pilot3.tar.gz
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc      5633 May 13 12:17 queuedata.json
[2024-05-15 15:38:17] -rwx------ 1 boinc boinc     32251 May 13 12:17 runpilot2-wrapper.sh
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc       100 May 15 10:29 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 15:38:17] -rwxr-xr-x 1 boinc boinc      7986 May 15 10:29 run_atlas
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc       105 May 15 10:29 job.xml
[2024-05-15 15:38:17] -rw-r--r-- 2 boinc boinc 615131188 May 15 10:29 EVNT.38776140._000173.pool.root.1
[2024-05-15 15:38:17] drwxrwx--x 2 boinc boinc      4096 May 15 10:29 shared
[2024-05-15 15:38:17] -rw-r--r-- 2 boinc boinc    479993 May 15 10:29 input.tar.gz
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc      6455 May 15 10:29 init_data.xml
[2024-05-15 15:38:17] -rw-r--r-- 2 boinc boinc     17537 May 15 10:29 start_atlas.sh
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc         0 May 15 10:29 boinc_lockfile
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc      2614 May 15 10:29 pandaJob.out
[2024-05-15 15:38:17] -rw------- 1 boinc boinc       424 May 15 10:29 setup.sh.local
[2024-05-15 15:38:17] -rw------- 1 boinc boinc   1007418 May 15 10:29 agis_schedconf.cvmfs.json
[2024-05-15 15:38:17] -rw------- 1 boinc boinc   1324588 May 15 10:29 cric_ddmendpoints.json
[2024-05-15 15:38:17] drwx------ 4 boinc boinc      4096 May 15 10:29 pilot3
[2024-05-15 15:38:17] -rw------- 1 boinc boinc 279335455 May 15 15:37 HITS.38776146._004317.pool.root.1
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc       531 May 15 15:37 boinc_task_state.xml
[2024-05-15 15:38:17] -rw------- 1 boinc boinc      1051 May 15 15:37 memory_monitor_summary.json
[2024-05-15 15:38:17] -rw------- 1 boinc boinc        95 May 15 15:37 pilot_heartbeat.json
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc        28 May 15 15:37 wrapper_checkpoint.txt
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc      8192 May 15 15:37 boinc_mmap_file
[2024-05-15 15:38:17] -rw------- 1 boinc boinc         0 May 15 15:37 agis_ddmendpoints.agis.ALL.json
[2024-05-15 15:38:17] -rw------- 1 boinc boinc    395154 May 15 15:37 log.38776146._004317.job.log.tgz.1
[2024-05-15 15:38:17] -rw------- 1 boinc boinc      7766 May 15 15:37 heartbeat.json
[2024-05-15 15:38:17] -rw------- 1 boinc boinc      4294 May 15 15:38 pilotlog.txt
[2024-05-15 15:38:17] -rw------- 1 boinc boinc   2062057 May 15 15:38 log.38776146._004317.job.log.1
[2024-05-15 15:38:17] -rw------- 1 boinc boinc       357 May 15 15:38 output.list
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc       620 May 15 15:38 runtime_log
[2024-05-15 15:38:17] -rw------- 1 boinc boinc   2478080 May 15 15:38 result.tar.gz
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc     11410 May 15 15:38 runtime_log.err
[2024-05-15 15:38:17] -rw------- 1 boinc boinc       658 May 15 15:38 YNWNDmVvhQ5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmfpGKDmXqR2ln.diag
[2024-05-15 15:38:17] -rw-r--r-- 1 boinc boinc     21279 May 15 15:38 stderr.txt
[2024-05-15 15:38:17] HITS file was successfully produced:
[2024-05-15 15:38:17] -rw------- 1 boinc boinc 279335455 May 15 15:37 shared/HITS.pool.root.1
[2024-05-15 15:38:17]  *** Contents of shared directory: ***
[2024-05-15 15:38:17] total 876428
[2024-05-15 15:38:17] -rw-r--r-- 2 boinc boinc 615131188 May 15 10:29 ATLAS.root_0
[2024-05-15 15:38:17] -rw-r--r-- 2 boinc boinc    479993 May 15 10:29 input.tar.gz
[2024-05-15 15:38:17] -rw-r--r-- 2 boinc boinc     17537 May 15 10:29 start_atlas.sh
[2024-05-15 15:38:17] -rw------- 1 boinc boinc 279335455 May 15 15:37 HITS.pool.root.1
[2024-05-15 15:38:17] -rw------- 1 boinc boinc   2478080 May 15 15:38 result.tar.gz
15:38:19 (3950812): run_atlas exited; CPU time 70521.216746
15:38:19 (3950812): called boinc_finish(0)

</stderr_txt>
]]>

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