Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:25:25 (1560376): wrapper (7.7.26015): starting
22:25:25 (1560376): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 22:25:25] Arguments: --nthreads 4
[2024-05-15 22:25:25] Threads: 4
[2024-05-15 22:25:25] Checking for CVMFS
[2024-05-15 22:25:25] No cvmfs_config command found, will try listing directly
[2024-05-15 22:25:26] CVMFS is ok
[2024-05-15 22:25:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 22:25:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 22:25:26] Further information can be found at the LHC@home message board.
[2024-05-15 22:25:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 22:25:26] Checking for apptainer binary...
[2024-05-15 22:25:26] which: no apptainer in ((null))
[2024-05-15 22:25:26] apptainer is not installed, using version from CVMFS
[2024-05-15 22:25:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 22:25:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2024-05-15 22:25:27] apptainer works
[2024-05-15 22:25:27] Set ATHENA_PROC_NUMBER=4
[2024-05-15 22:25:27] Set ATHENA_CORE_NUMBER=4
[2024-05-15 22:25:27] Starting ATLAS job with PandaID=6205819047
[2024-05-15 22:25:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 03:08:42]  *** The last 200 lines of the pilot log: ***
[2024-05-16 03:08:42] 2024-05-16 01:08:28,179 | INFO     | fitting pss+swap vs Time
[2024-05-16 03:08:42] 2024-05-16 01:08:28,179 | INFO     | model: linear, x: [1715804762.0, 1715804823.0, 1715804884.0, 1715804945.0, 1715805006.0, 1715805067.0, 1715805128.0, 1715805189.0, 1715805250.0, 1715805311.0, 1715
[2024-05-16 03:08:42] 2024-05-16 01:08:28,180 | INFO     | sum of square deviations: 6662039329.5
[2024-05-16 03:08:42] 2024-05-16 01:08:28,181 | INFO     | sum of deviations: 54470206077.99998
[2024-05-16 03:08:42] 2024-05-16 01:08:28,181 | INFO     | mean x: 1715813210.5
[2024-05-16 03:08:42] 2024-05-16 01:08:28,181 | INFO     | mean y: 2338680.7697841725
[2024-05-16 03:08:42] 2024-05-16 01:08:28,181 | INFO     | -- intersect: -14026503621.832497
[2024-05-16 03:08:42] 2024-05-16 01:08:28,181 | INFO     | intersect: -14026503621.832497
[2024-05-16 03:08:42] 2024-05-16 01:08:28,181 | INFO     | chi2: 3.7151537534391905
[2024-05-16 03:08:42] 2024-05-16 01:08:28,181 | INFO     | model: linear, x: [1715804762.0, 1715804823.0, 1715804884.0, 1715804945.0, 1715805006.0, 1715805067.0, 1715805128.0, 1715805189.0, 1715805250.0, 1715805311.0, 1715
[2024-05-16 03:08:42] 2024-05-16 01:08:28,182 | INFO     | sum of square deviations: 6309000152.0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,183 | INFO     | sum of deviations: 53635790981.999985
[2024-05-16 03:08:42] 2024-05-16 01:08:28,183 | INFO     | mean x: 1715813058.0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,183 | INFO     | mean y: 2338320.3113553114
[2024-05-16 03:08:42] 2024-05-16 01:08:28,183 | INFO     | -- intersect: -14584599122.367315
[2024-05-16 03:08:42] 2024-05-16 01:08:28,183 | INFO     | intersect: -14584599122.367315
[2024-05-16 03:08:42] 2024-05-16 01:08:28,183 | INFO     | chi2: 3.717973975643292
[2024-05-16 03:08:42] 2024-05-16 01:08:28,183 | INFO     | current chi2=3.717973975643292 (change=-0.07591131864975637 %)
[2024-05-16 03:08:42] 2024-05-16 01:08:28,183 | INFO     | right removable region: 272
[2024-05-16 03:08:42] 2024-05-16 01:08:28,183 | INFO     | model: linear, x: [1715805067.0, 1715805128.0, 1715805189.0, 1715805250.0, 1715805311.0, 1715805372.0, 1715805433.0, 1715805494.0, 1715805555.0, 1715805616.0, 1715
[2024-05-16 03:08:42] 2024-05-16 01:08:28,184 | INFO     | sum of square deviations: 6309000152.0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,185 | INFO     | sum of deviations: -6156343016.000001
[2024-05-16 03:08:42] 2024-05-16 01:08:28,185 | INFO     | mean x: 1715813363.0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,185 | INFO     | mean y: 2364801.1611721613
[2024-05-16 03:08:42] 2024-05-16 01:08:28,185 | INFO     | -- intersect: 1676661101.6163135
[2024-05-16 03:08:42] 2024-05-16 01:08:28,185 | INFO     | intersect: 1676661101.6163135
[2024-05-16 03:08:42] 2024-05-16 01:08:28,185 | INFO     | chi2: 1.4604017784565195
[2024-05-16 03:08:42] 2024-05-16 01:08:28,185 | INFO     | current chi2=1.4604017784565195 (change=60.69067728072904 %)
[2024-05-16 03:08:42] 2024-05-16 01:08:28,185 | INFO     | model: linear, x: [1715805372.0, 1715805433.0, 1715805494.0, 1715805555.0, 1715805616.0, 1715805677.0, 1715805738.0, 1715805799.0, 1715805860.0, 1715805921.0, 1715
[2024-05-16 03:08:42] 2024-05-16 01:08:28,185 | INFO     | sum of square deviations: 5968658887.0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,187 | INFO     | sum of deviations: -51994557464.499985
[2024-05-16 03:08:42] 2024-05-16 01:08:28,187 | INFO     | mean x: 1715813515.5
[2024-05-16 03:08:42] 2024-05-16 01:08:28,187 | INFO     | mean y: 2385340.6156716417
[2024-05-16 03:08:42] 2024-05-16 01:08:28,187 | INFO     | -- intersect: 14949288174.07131
[2024-05-16 03:08:42] 2024-05-16 01:08:28,187 | INFO     | intersect: 14949288174.07131
[2024-05-16 03:08:42] 2024-05-16 01:08:28,187 | INFO     | chi2: 0.269511336055214
[2024-05-16 03:08:42] 2024-05-16 01:08:28,187 | INFO     | current chi2=0.269511336055214 (change=81.54539798355648 %)
[2024-05-16 03:08:42] 2024-05-16 01:08:28,187 | INFO     | model: linear, x: [1715805677.0, 1715805738.0, 1715805799.0, 1715805860.0, 1715805921.0, 1715805982.0, 1715806043.0, 1715806104.0, 1715806165.0, 1715806226.0, 1715
[2024-05-16 03:08:42] 2024-05-16 01:08:28,187 | INFO     | sum of square deviations: 5640782972.0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,188 | INFO     | sum of deviations: -51828095693.0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,188 | INFO     | mean x: 1715813668.0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,189 | INFO     | mean y: 2385226.216730038
[2024-05-16 03:08:42] 2024-05-16 01:08:28,189 | INFO     | -- intersect: 15767458163.410622
[2024-05-16 03:08:42] 2024-05-16 01:08:28,189 | INFO     | intersect: 15767458163.410622
[2024-05-16 03:08:42] 2024-05-16 01:08:28,189 | INFO     | chi2: 0.2289795559356758
[2024-05-16 03:08:42] 2024-05-16 01:08:28,189 | INFO     | current chi2=0.2289795559356758 (change=15.038988976417148 %)
[2024-05-16 03:08:42] 2024-05-16 01:08:28,189 | INFO     | left removable region: 30
[2024-05-16 03:08:42] 2024-05-16 01:08:28,189 | INFO     | model: linear, x: [1715806592.0, 1715806653.0, 1715806714.0, 1715806775.0, 1715806836.0, 1715806897.0, 1715806958.0, 1715807019.0, 1715807080.0, 1715807141.0, 1715
[2024-05-16 03:08:42] 2024-05-16 01:08:28,189 | INFO     | sum of square deviations: 4394577280.5
[2024-05-16 03:08:42] 2024-05-16 01:08:28,190 | INFO     | sum of deviations: -24769583719.5
[2024-05-16 03:08:42] 2024-05-16 01:08:28,190 | INFO     | mean x: 1715813942.5
[2024-05-16 03:08:42] 2024-05-16 01:08:28,190 | INFO     | mean y: 2372245.5247933883
[2024-05-16 03:08:42] 2024-05-16 01:08:28,190 | INFO     | -- intersect: 9673381396.831287
[2024-05-16 03:08:42] 2024-05-16 01:08:28,190 | INFO     | intersect: 9673381396.831287
[2024-05-16 03:08:42] 2024-05-16 01:08:28,190 | INFO     | chi2: 0.15867005578594864
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | -- intersect: 9673381396.831287
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | current memory leak: -5.64 B/s (using 242 data points, chi2=0.16)
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | ..............................
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | . Timing measurements:
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | . get job = 0 s
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | . initial setup = 1 s
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | . payload setup = 5 s
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | . stage-in = 0 s
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | . payload execution = 16943 s
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | . stage-out = 1 s
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | . log creation = 0 s
[2024-05-16 03:08:42] 2024-05-16 01:08:28,191 | INFO     | ..............................
[2024-05-16 03:08:42] 2024-05-16 01:08:28,261 | INFO     | 
[2024-05-16 03:08:42] 2024-05-16 01:08:28,261 | INFO     | job summary report
[2024-05-16 03:08:42] 2024-05-16 01:08:28,261 | INFO     | --------------------------------------------------
[2024-05-16 03:08:42] 2024-05-16 01:08:28,261 | INFO     | PanDA job id: 6205819047
[2024-05-16 03:08:42] 2024-05-16 01:08:28,261 | INFO     | task id: 38776146
[2024-05-16 03:08:42] 2024-05-16 01:08:28,261 | INFO     | errors: (none)
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | pilot state: finished 
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | transexitcode: 0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | exeerrorcode: 0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | exeerrordiag: 
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | exitcode: 0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | exitmsg: OK
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | cpuconsumptiontime: 65012 s
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | nevents: 400
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | neventsw: 0
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | pid: 1571808
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | pgrp: 1571808
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | corecount: 4
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | event service: False
[2024-05-16 03:08:42] 2024-05-16 01:08:28,262 | INFO     | sizes: {0: 2392017, 1: 2392216, 5: 2392422, 11: 2392478, 16952: 2424416, 16953: 2424415, 16954: 2433637, 16957: 2433751}
[2024-05-16 03:08:42] 2024-05-16 01:08:28,263 | INFO     | --------------------------------------------------
[2024-05-16 03:08:42] 2024-05-16 01:08:28,263 | INFO     | 
[2024-05-16 03:08:42] 2024-05-16 01:08:28,263 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/1
[2024-05-16 03:08:42] 2024-05-16 01:08:28,287 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,287 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,287 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,287 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,287 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,287 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,287 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,287 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 03:08:42] 2024-05-16 01:08:28,288 | INFO     | job 6205819047 has completed (purged errors)
[2024-05-16 03:08:42] 2024-05-16 01:08:28,289 | INFO     | overall cleanup function is called
[2024-05-16 03:08:42] 2024-05-16 01:08:29,296 | INFO     | --- collectZombieJob: --- 10, [1571808]
[2024-05-16 03:08:42] 2024-05-16 01:08:29,296 | INFO     | zombie collector waiting for pid 1571808
[2024-05-16 03:08:42] 2024-05-16 01:08:29,296 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 03:08:42] 2024-05-16 01:08:30,301 | INFO     | collected zombie processes
[2024-05-16 03:08:42] 2024-05-16 01:08:30,301 | INFO     | will now attempt to kill all subprocesses of pid=1571808
[2024-05-16 03:08:42] 2024-05-16 01:08:30,447 | INFO     | process IDs to be killed: [1571808] (in reverse order)
[2024-05-16 03:08:42] 2024-05-16 01:08:30,554 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 03:08:42] 2024-05-16 01:08:30,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 03:08:42] 2024-05-16 01:08:30,562 | INFO     | did not find any defunct processes belonging to 1571808
[2024-05-16 03:08:42] 2024-05-16 01:08:30,568 | INFO     | did not find any defunct processes belonging to 1571808
[2024-05-16 03:08:42] 2024-05-16 01:08:30,568 | INFO     | ready for new job
[2024-05-16 03:08:42] 2024-05-16 01:08:30,568 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 03:08:42] 2024-05-16 01:08:30,570 | INFO     | *************************************
[2024-05-16 03:08:42] 2024-05-16 01:08:30,570 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 03:08:42] 2024-05-16 01:08:30,570 | INFO     | *************************************
[2024-05-16 03:08:42] 2024-05-16 01:08:30,570 | INFO     | 
[2024-05-16 03:08:42] 2024-05-16 01:08:30,573 | INFO     | architecture information:
[2024-05-16 03:08:42] 2024-05-16 01:08:30,573 | INFO     | executing command: cat /etc/os-release
[2024-05-16 03:08:42] 2024-05-16 01:08:30,588 | INFO     | cat /etc/os-release:
[2024-05-16 03:08:42] NAME="CentOS Linux"
[2024-05-16 03:08:42] VERSION="7 (Core)"
[2024-05-16 03:08:42] ID="centos"
[2024-05-16 03:08:42] ID_LIKE="rhel fedora"
[2024-05-16 03:08:42] VERSION_ID="7"
[2024-05-16 03:08:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 03:08:42] ANSI_COLOR="0;31"
[2024-05-16 03:08:42] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 03:08:42] HOME_URL="https://www.centos.org/"
[2024-05-16 03:08:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 03:08:42] 
[2024-05-16 03:08:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 03:08:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 03:08:42] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 03:08:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 03:08:42] 
[2024-05-16 03:08:42] 2024-05-16 01:08:30,589 | INFO     | *************************************
[2024-05-16 03:08:42] 2024-05-16 01:08:31,091 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/1
[2024-05-16 03:08:42] 2024-05-16 01:08:31,112 | INFO     | sufficient remaining disk space (591603433472 B)
[2024-05-16 03:08:42] 2024-05-16 01:08:31,113 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 03:08:42] 2024-05-16 01:08:31,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 03:08:42] 2024-05-16 01:08:31,113 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 03:08:42] 2024-05-16 01:08:31,113 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 03:08:42] 2024-05-16 01:08:31,113 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-16 03:08:42] 2024-05-16 01:08:31,114 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 03:08:42] 2024-05-16 01:08:31,114 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 03:08:42] 2024-05-16 01:08:31,114 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 03:08:42] 2024-05-16 01:08:31,153 | INFO     | all payload control threads have been joined
[2024-05-16 03:08:42] 2024-05-16 01:08:31,323 | INFO     | all data control threads have been joined
[2024-05-16 03:08:42] 2024-05-16 01:08:31,513 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-16 03:08:42] 2024-05-16 01:08:31,514 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-16 03:08:42] 2024-05-16 01:08:31,514 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 03:08:42] 2024-05-16 01:08:31,514 | INFO     | will abort loop
[2024-05-16 03:08:42] 2024-05-16 01:08:32,117 | INFO     | [job] retrieve thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:32,157 | INFO     | [payload] control thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:32,176 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:32,258 | INFO     | all job control threads have been joined
[2024-05-16 03:08:42] 2024-05-16 01:08:32,327 | INFO     | [data] control thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:32,360 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:32,519 | INFO     | [job] job monitor thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:32,564 | INFO     | [payload] failed_post thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:32,830 | INFO     | [payload] validate_post thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:33,119 | INFO     | [data] copytool_out thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:33,254 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 03:08:42] 2024-05-16 01:08:33,263 | INFO     | [job] control thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:33,339 | INFO     | [job] validate thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:33,411 | INFO     | [data] copytool_in thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:33,443 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:33,525 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:34,259 | INFO     | [job] queue monitor thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:35,119 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 03:08:42] 2024-05-16 01:08:36,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47986976928832)>', '<ExcThread(monitor, started 47987154482944)>']
[2024-05-16 03:08:42] 2024-05-16 01:08:37,144 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 03:08:42] 2024-05-16 01:08:37,144 | INFO     | [monitor] control thread has ended
[2024-05-16 03:08:42] 2024-05-16 01:08:41,503 | INFO     | all workflow threads have been joined
[2024-05-16 03:08:42] 2024-05-16 01:08:41,503 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 03:08:42] 2024-05-16 01:08:41,503 | INFO     | traces error code: 0
[2024-05-16 03:08:42] 2024-05-16 01:08:41,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 03:08:42] 2024-05-16 01:08:41,583 [wrapper] ==== pilot stdout END ====
[2024-05-16 03:08:42] 2024-05-16 01:08:41,586 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 03:08:42] 2024-05-16 01:08:41,588 [wrapper] pilotpid: 1564687
[2024-05-16 03:08:42] 2024-05-16 01:08:41,590 [wrapper] Pilot exit status: 0
[2024-05-16 03:08:42] 2024-05-16 01:08:41,596 [wrapper] pandaids: 6205819047
[2024-05-16 03:08:42] 2024-05-16 01:08:41,672 [wrapper] cleanup: SIGTERM to supervisor_pilot 2130204 1564688
[2024-05-16 03:08:42] 2024-05-16 01:08:41,675 [wrapper] Test setup, not cleaning
[2024-05-16 03:08:42] 2024-05-16 01:08:41,678 [wrapper] ==== wrapper stdout END ====
[2024-05-16 03:08:42] 2024-05-16 01:08:41,680 [wrapper] ==== wrapper stderr END ====
[2024-05-16 03:08:42] 2024-05-16 01:08:41,685 [wrapper] apfmon messages muted
[2024-05-16 03:08:42]  *** Error codes and diagnostics ***
[2024-05-16 03:08:42]     "exeErrorCode": 0,
[2024-05-16 03:08:42]     "exeErrorDiag": "",
[2024-05-16 03:08:42]     "pilotErrorCode": 0,
[2024-05-16 03:08:42]     "pilotErrorDiag": "",
[2024-05-16 03:08:42]  *** Listing of results directory ***
[2024-05-16 03:08:42] total 873684
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc    467845 May 13 11:19 pilot3.tar.gz
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc      5633 May 13 11:32 queuedata.json
[2024-05-16 03:08:42] -rwx------ 1 boinc boinc     32251 May 13 11:34 runpilot2-wrapper.sh
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc       100 May 15 22:25 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 03:08:42] -rwxr-xr-x 1 boinc boinc      7986 May 15 22:25 run_atlas
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc       105 May 15 22:25 job.xml
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc      6662 May 15 22:25 init_data.xml
[2024-05-16 03:08:42] -rw-r--r-- 2 boinc boinc 612718863 May 15 22:25 EVNT.38776140._000037.pool.root.1
[2024-05-16 03:08:42] drwxrwx--x 2 boinc boinc      4096 May 15 22:25 shared
[2024-05-16 03:08:42] -rw-r--r-- 2 boinc boinc    479994 May 15 22:25 input.tar.gz
[2024-05-16 03:08:42] -rw-r--r-- 2 boinc boinc     17537 May 15 22:25 start_atlas.sh
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc         0 May 15 22:25 boinc_lockfile
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc      2619 May 15 22:25 pandaJob.out
[2024-05-16 03:08:42] -rw------- 1 boinc boinc       424 May 15 22:25 setup.sh.local
[2024-05-16 03:08:42] -rw------- 1 boinc boinc   1011331 May 15 22:25 agis_schedconf.cvmfs.json
[2024-05-16 03:08:42] -rw------- 1 boinc boinc   1324701 May 15 22:25 cric_ddmendpoints.json
[2024-05-16 03:08:42] drwx------ 4 boinc boinc      4096 May 15 22:25 pilot3
[2024-05-16 03:08:42] -rw------- 1 boinc boinc 273999952 May 16 03:07 HITS.38776146._000915.pool.root.1
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc       531 May 16 03:07 boinc_task_state.xml
[2024-05-16 03:08:42] -rw------- 1 boinc boinc      1047 May 16 03:08 memory_monitor_summary.json
[2024-05-16 03:08:42] -rw------- 1 boinc boinc        95 May 16 03:08 pilot_heartbeat.json
[2024-05-16 03:08:42] -rw------- 1 boinc boinc         0 May 16 03:08 agis_ddmendpoints.agis.ALL.json
[2024-05-16 03:08:42] -rw------- 1 boinc boinc    372655 May 16 03:08 log.38776146._000915.job.log.tgz.1
[2024-05-16 03:08:42] -rw------- 1 boinc boinc      7758 May 16 03:08 heartbeat.json
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc        28 May 16 03:08 wrapper_checkpoint.txt
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc      8192 May 16 03:08 boinc_mmap_file
[2024-05-16 03:08:42] -rw------- 1 boinc boinc      4530 May 16 03:08 pilotlog.txt
[2024-05-16 03:08:42] -rw------- 1 boinc boinc   1833417 May 16 03:08 log.38776146._000915.job.log.1
[2024-05-16 03:08:42] -rw------- 1 boinc boinc       357 May 16 03:08 output.list
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc       620 May 16 03:08 runtime_log
[2024-05-16 03:08:42] -rw------- 1 boinc boinc   2222080 May 16 03:08 result.tar.gz
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc     11410 May 16 03:08 runtime_log.err
[2024-05-16 03:08:42] -rw------- 1 boinc boinc       658 May 16 03:08 7ezMDm1FhQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmXDKKDmryEtcm.diag
[2024-05-16 03:08:42] -rw-r--r-- 1 boinc boinc     21378 May 16 03:08 stderr.txt
[2024-05-16 03:08:42] HITS file was successfully produced:
[2024-05-16 03:08:42] -rw------- 1 boinc boinc 273999952 May 16 03:07 shared/HITS.pool.root.1
[2024-05-16 03:08:42]  *** Contents of shared directory: ***
[2024-05-16 03:08:42] total 868612
[2024-05-16 03:08:42] -rw-r--r-- 2 boinc boinc 612718863 May 15 22:25 ATLAS.root_0
[2024-05-16 03:08:42] -rw-r--r-- 2 boinc boinc    479994 May 15 22:25 input.tar.gz
[2024-05-16 03:08:42] -rw-r--r-- 2 boinc boinc     17537 May 15 22:25 start_atlas.sh
[2024-05-16 03:08:42] -rw------- 1 boinc boinc 273999952 May 16 03:07 HITS.pool.root.1
[2024-05-16 03:08:42] -rw------- 1 boinc boinc   2222080 May 16 03:08 result.tar.gz
03:08:44 (1560376): run_atlas exited; CPU time 64679.653351
03:08:44 (1560376): called boinc_finish(0)

</stderr_txt>
]]>

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