Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
12:21:35 (193799): wrapper (7.7.26015): starting
12:21:35 (193799): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 12:21:35] Arguments: --nthreads 12
[2024-05-17 12:21:35] Threads: 12
[2024-05-17 12:21:35] Checking for CVMFS
[2024-05-17 12:21:35] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 12:21:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 12:21:35] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 12:21:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 12:21:36] 2.10.1.0 2741 172633 187828 132852 2 63 40404580 45568000 12611 130560 0 1154149398 99.772 689915258 16103 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-17 12:21:36] CVMFS is ok
[2024-05-17 12:21:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 12:21:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 12:21:36] Further information can be found at the LHC@home message board.
[2024-05-17 12:21:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 12:21:36] Checking for apptainer binary...
[2024-05-17 12:21:36] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 12:21:36] Running /usr/bin/apptainer --version
[2024-05-17 12:21:36] apptainer version 1.1.8-1.el7
[2024-05-17 12:21:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 12:21:37] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0079.triumf.lcg
[2024-05-17 12:21:37] apptainer works
[2024-05-17 12:21:37] Set ATHENA_PROC_NUMBER=12
[2024-05-17 12:21:37] Set ATHENA_CORE_NUMBER=12
[2024-05-17 12:21:37] Starting ATLAS job with PandaID=6205825431
[2024-05-17 12:21:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 13:35:42]  *** The last 200 lines of the pilot log: ***
[2024-05-17 13:35:42]  domain=
[2024-05-17 13:35:42]  filesize=354288
[2024-05-17 13:35:42]  filetype=log
[2024-05-17 13:35:42]  guid=064060c4-6664-4b62-b31f-1420a6b4c7d2
[2024-05-17 13:35:42]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 13:35:42]  is_tar=False
[2024-05-17 13:35:42]  lfn=log.38776146._003640.job.log.tgz.1
[2024-05-17 13:35:42]  mtime=0
[2024-05-17 13:35:42]  protocol_id=None
[2024-05-17 13:35:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 13:35:42]  replicas=None
[2024-05-17 13:35:42]  scope=mc23_13p6TeV
[2024-05-17 13:35:42]  status=None
[2024-05-17 13:35:42]  status_code=0
[2024-05-17 13:35:42]  storage_token=
[2024-05-17 13:35:42]  surl=/home/boinc/slots/0/PanDA_Pilot-6205825431/log.38776146._003640.job.log.tgz.1
[2024-05-17 13:35:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4b/8b/log.38776146._003640.job.log.tgz.1
[2024-05-17 13:35:42]  workdir=None
[2024-05-17 13:35:42] ]
[2024-05-17 13:35:42] 2024-05-17 20:35:20,646 | INFO     | transferring file log.38776146._003640.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6205825431/log.38776146._003640.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 13:35:42] 2024-05-17 20:35:20,646 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6205825431/log.38776146._003640.job.log.tgz.1 /home/boinc/slots/0/log.38776146._003640.job.log.t
[2024-05-17 13:35:42] 2024-05-17 20:35:20,668 | INFO     | adding to output.list: log.38776146._003640.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4b/8b/log.38776146._003640.job.log.tg
[2024-05-17 13:35:42] 2024-05-17 20:35:20,669 | INFO     | summary of transferred files:
[2024-05-17 13:35:42] 2024-05-17 20:35:20,669 | INFO     |  -- lfn=log.38776146._003640.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 13:35:42] 2024-05-17 20:35:20,669 | INFO     | stage-out finished correctly
[2024-05-17 13:35:42] 2024-05-17 20:35:21,431 | WARNING  | process 206497 is no longer using CPU - aborting
[2024-05-17 13:35:42] 2024-05-17 20:35:21,431 | INFO     | will not send any job update
[2024-05-17 13:35:42] 2024-05-17 20:35:21,821 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 13:35:42] 2024-05-17 20:35:22,581 | INFO     | job 6205825431 has state=finished
[2024-05-17 13:35:42] 2024-05-17 20:35:22,582 | INFO     | preparing for final server update for job 6205825431 in state='finished'
[2024-05-17 13:35:42] 2024-05-17 20:35:22,870 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-05-17 13:35:42] 2024-05-17 20:35:22,870 | INFO     | this job has now completed (state=finished)
[2024-05-17 13:35:42] 2024-05-17 20:35:22,870 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 13:35:42] 2024-05-17 20:35:22,870 | INFO     | job 6205825431 has finished - writing final server update
[2024-05-17 13:35:42] 2024-05-17 20:35:22,870 | INFO     | total number of processed events: 400 (read)
[2024-05-17 13:35:42] 2024-05-17 20:35:22,873 | INFO     | executing command: lscpu
[2024-05-17 13:35:42] 2024-05-17 20:35:22,933 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 13:35:42] 2024-05-17 20:35:22,933 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 13:35:42] 2024-05-17 20:35:22,966 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 13:35:42] 2024-05-17 20:35:23,934 | INFO     | monitor loop #345: job 0:6205825431 is in state 'finished'
[2024-05-17 13:35:42] 2024-05-17 20:35:23,934 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 13:35:42] 2024-05-17 20:35:26,070 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 13:35:42] 2024-05-17 20:35:26,070 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6205825431/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 13:35:42] 2024-05-17 20:35:26,072 | INFO     | extracted standard info from prmon json
[2024-05-17 13:35:42] 2024-05-17 20:35:26,072 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 13:35:42] 2024-05-17 20:35:26,072 | WARNING  | GPU info not found in prmon json
[2024-05-17 13:35:42] 2024-05-17 20:35:26,073 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 13:35:42] 2024-05-17 20:35:26,073 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 13:35:42] 2024-05-17 20:35:26,076 | INFO     | fitting pss+swap vs Time
[2024-05-17 13:35:42] 2024-05-17 20:35:26,076 | INFO     | model: linear, x: [1715974035.0, 1715974096.0, 1715974157.0, 1715974218.0, 1715974279.0, 1715974340.0, 1715974401.0, 1715974462.0, 1715974523.0, 1715974584.0, 1715
[2024-05-17 13:35:42] 2024-05-17 20:35:26,077 | INFO     | sum of square deviations: 85136480.0
[2024-05-17 13:35:42] 2024-05-17 20:35:26,077 | INFO     | sum of deviations: 18844894090.0
[2024-05-17 13:35:42] 2024-05-17 20:35:26,077 | INFO     | mean x: 1715975987.0
[2024-05-17 13:35:42] 2024-05-17 20:35:26,077 | INFO     | mean y: 2737352.369230769
[2024-05-17 13:35:42] 2024-05-17 20:35:26,077 | INFO     | -- intersect: -379827221978.792
[2024-05-17 13:35:42] 2024-05-17 20:35:26,078 | INFO     | intersect: -379827221978.792
[2024-05-17 13:35:42] 2024-05-17 20:35:26,078 | INFO     | chi2: 2.4480493615756838
[2024-05-17 13:35:42] 2024-05-17 20:35:26,078 | INFO     | -- intersect: -379827221978.792
[2024-05-17 13:35:42] 2024-05-17 20:35:26,078 | INFO     | current memory leak: 221.35 B/s (using 65 data points, chi2=2.45)
[2024-05-17 13:35:42] 2024-05-17 20:35:26,079 | INFO     | ..............................
[2024-05-17 13:35:42] 2024-05-17 20:35:26,079 | INFO     | . Timing measurements:
[2024-05-17 13:35:42] 2024-05-17 20:35:26,079 | INFO     | . get job = 0 s
[2024-05-17 13:35:42] 2024-05-17 20:35:26,079 | INFO     | . initial setup = 2 s
[2024-05-17 13:35:42] 2024-05-17 20:35:26,079 | INFO     | . payload setup = 5 s
[2024-05-17 13:35:42] 2024-05-17 20:35:26,079 | INFO     | . stage-in = 0 s
[2024-05-17 13:35:42] 2024-05-17 20:35:26,079 | INFO     | . payload execution = 4388 s
[2024-05-17 13:35:42] 2024-05-17 20:35:26,079 | INFO     | . stage-out = 0 s
[2024-05-17 13:35:42] 2024-05-17 20:35:26,080 | INFO     | . log creation = 0 s
[2024-05-17 13:35:42] 2024-05-17 20:35:26,080 | INFO     | ..............................
[2024-05-17 13:35:42] 2024-05-17 20:35:26,173 | INFO     | 
[2024-05-17 13:35:42] 2024-05-17 20:35:26,173 | INFO     | job summary report
[2024-05-17 13:35:42] 2024-05-17 20:35:26,173 | INFO     | --------------------------------------------------
[2024-05-17 13:35:42] 2024-05-17 20:35:26,173 | INFO     | PanDA job id: 6205825431
[2024-05-17 13:35:42] 2024-05-17 20:35:26,174 | INFO     | task id: 38776146
[2024-05-17 13:35:42] 2024-05-17 20:35:26,174 | INFO     | errors: (none)
[2024-05-17 13:35:42] 2024-05-17 20:35:26,174 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 13:35:42] 2024-05-17 20:35:26,174 | INFO     | pilot state: finished 
[2024-05-17 13:35:42] 2024-05-17 20:35:26,174 | INFO     | transexitcode: 0
[2024-05-17 13:35:42] 2024-05-17 20:35:26,174 | INFO     | exeerrorcode: 0
[2024-05-17 13:35:42] 2024-05-17 20:35:26,174 | INFO     | exeerrordiag: 
[2024-05-17 13:35:42] 2024-05-17 20:35:26,174 | INFO     | exitcode: 0
[2024-05-17 13:35:42] 2024-05-17 20:35:26,174 | INFO     | exitmsg: OK
[2024-05-17 13:35:42] 2024-05-17 20:35:26,174 | INFO     | cpuconsumptiontime: 40855 s
[2024-05-17 13:35:42] 2024-05-17 20:35:26,175 | INFO     | nevents: 400
[2024-05-17 13:35:42] 2024-05-17 20:35:26,175 | INFO     | neventsw: 0
[2024-05-17 13:35:42] 2024-05-17 20:35:26,175 | INFO     | pid: 206497
[2024-05-17 13:35:42] 2024-05-17 20:35:26,175 | INFO     | pgrp: 206497
[2024-05-17 13:35:42] 2024-05-17 20:35:26,175 | INFO     | corecount: 12
[2024-05-17 13:35:42] 2024-05-17 20:35:26,175 | INFO     | event service: False
[2024-05-17 13:35:42] 2024-05-17 20:35:26,175 | INFO     | sizes: {0: 2392172, 4: 2392378, 11: 2392406, 4397: 2418448, 4399: 2427402, 4401: 2427458, 4405: 2427756}
[2024-05-17 13:35:42] 2024-05-17 20:35:26,175 | INFO     | --------------------------------------------------
[2024-05-17 13:35:42] 2024-05-17 20:35:26,175 | INFO     | 
[2024-05-17 13:35:42] 2024-05-17 20:35:26,176 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 13:35:42] 2024-05-17 20:35:26,196 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,196 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,196 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,196 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,197 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,197 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,197 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,197 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,197 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,197 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,197 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,197 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,197 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,198 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,198 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 13:35:42] 2024-05-17 20:35:26,198 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,198 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 13:35:42] 2024-05-17 20:35:26,198 | INFO     | job 6205825431 has completed (purged errors)
[2024-05-17 13:35:42] 2024-05-17 20:35:26,198 | INFO     | overall cleanup function is called
[2024-05-17 13:35:42] 2024-05-17 20:35:27,203 | INFO     | --- collectZombieJob: --- 10, [206497]
[2024-05-17 13:35:42] 2024-05-17 20:35:27,203 | INFO     | zombie collector waiting for pid 206497
[2024-05-17 13:35:42] 2024-05-17 20:35:27,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 13:35:42] 2024-05-17 20:35:28,206 | INFO     | collected zombie processes
[2024-05-17 13:35:42] 2024-05-17 20:35:28,206 | INFO     | will now attempt to kill all subprocesses of pid=206497
[2024-05-17 13:35:42] 2024-05-17 20:35:28,333 | INFO     | process IDs to be killed: [206497] (in reverse order)
[2024-05-17 13:35:42] 2024-05-17 20:35:28,415 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 13:35:42] 2024-05-17 20:35:28,415 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 13:35:42] 2024-05-17 20:35:28,422 | INFO     | did not find any defunct processes belonging to 206497
[2024-05-17 13:35:42] 2024-05-17 20:35:28,427 | INFO     | did not find any defunct processes belonging to 206497
[2024-05-17 13:35:42] 2024-05-17 20:35:28,427 | INFO     | ready for new job
[2024-05-17 13:35:42] 2024-05-17 20:35:28,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 13:35:42] 2024-05-17 20:35:28,429 | INFO     | *************************************
[2024-05-17 13:35:42] 2024-05-17 20:35:28,429 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 13:35:42] 2024-05-17 20:35:28,429 | INFO     | *************************************
[2024-05-17 13:35:42] 2024-05-17 20:35:28,429 | INFO     | 
[2024-05-17 13:35:42] 2024-05-17 20:35:28,431 | INFO     | architecture information:
[2024-05-17 13:35:42] 2024-05-17 20:35:28,431 | INFO     | executing command: cat /etc/os-release
[2024-05-17 13:35:42] 2024-05-17 20:35:28,446 | INFO     | cat /etc/os-release:
[2024-05-17 13:35:42] NAME="CentOS Linux"
[2024-05-17 13:35:42] VERSION="7 (Core)"
[2024-05-17 13:35:42] ID="centos"
[2024-05-17 13:35:42] ID_LIKE="rhel fedora"
[2024-05-17 13:35:42] VERSION_ID="7"
[2024-05-17 13:35:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 13:35:42] ANSI_COLOR="0;31"
[2024-05-17 13:35:42] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 13:35:42] HOME_URL="https://www.centos.org/"
[2024-05-17 13:35:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 13:35:42] 
[2024-05-17 13:35:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 13:35:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 13:35:42] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 13:35:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 13:35:42] 
[2024-05-17 13:35:42] 2024-05-17 20:35:28,446 | INFO     | *************************************
[2024-05-17 13:35:42] 2024-05-17 20:35:28,950 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 13:35:42] 2024-05-17 20:35:28,968 | INFO     | sufficient remaining disk space (2147337895936 B)
[2024-05-17 13:35:42] 2024-05-17 20:35:28,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 13:35:42] 2024-05-17 20:35:28,969 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 13:35:42] 2024-05-17 20:35:28,970 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 13:35:42] 2024-05-17 20:35:28,970 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 13:35:42] 2024-05-17 20:35:28,970 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 13:35:42] 2024-05-17 20:35:28,971 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 13:35:42] 2024-05-17 20:35:28,971 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 13:35:42] 2024-05-17 20:35:28,980 | INFO     | all job control threads have been joined
[2024-05-17 13:35:42] 2024-05-17 20:35:29,949 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 13:35:42] 2024-05-17 20:35:29,949 | INFO     | aborting loop
[2024-05-17 13:35:42] 2024-05-17 20:35:29,974 | INFO     | [job] retrieve thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:29,985 | INFO     | [job] control thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:30,032 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:30,033 | INFO     | all data control threads have been joined
[2024-05-17 13:35:42] 2024-05-17 20:35:30,097 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:30,133 | INFO     | all payload control threads have been joined
[2024-05-17 13:35:42] 2024-05-17 20:35:30,197 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:30,369 | INFO     | [payload] failed_post thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:30,771 | INFO     | [data] copytool_in thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:30,803 | INFO     | [payload] validate_post thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:30,954 | INFO     | [job] job monitor thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:30,975 | INFO     | [data] copytool_out thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:31,038 | INFO     | [data] control thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:31,096 | INFO     | [job] validate thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:31,138 | INFO     | [payload] control thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:31,183 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 13:35:42] 2024-05-17 20:35:31,392 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:32,188 | INFO     | [job] queue monitor thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:32,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 13:35:42] 2024-05-17 20:35:36,432 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 13:35:42] 2024-05-17 20:35:36,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140494487758656)>', '<ExcThread(monitor, started 140493933500160)>']
[2024-05-17 13:35:42] 2024-05-17 20:35:37,011 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 13:35:42] 2024-05-17 20:35:37,011 | INFO     | [monitor] control thread has ended
[2024-05-17 13:35:42] 2024-05-17 20:35:41,757 | INFO     | all workflow threads have been joined
[2024-05-17 13:35:42] 2024-05-17 20:35:41,757 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 13:35:42] 2024-05-17 20:35:41,757 | INFO     | traces error code: 0
[2024-05-17 13:35:42] 2024-05-17 20:35:41,757 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 13:35:42] 2024-05-17 20:35:41,832 [wrapper] ==== pilot stdout END ====
[2024-05-17 13:35:42] 2024-05-17 20:35:41,835 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 13:35:42] 2024-05-17 20:35:41,838 [wrapper] pilotpid: 197990
[2024-05-17 13:35:42] 2024-05-17 20:35:41,840 [wrapper] Pilot exit status: 0
[2024-05-17 13:35:42] 2024-05-17 20:35:41,850 [wrapper] pandaids: 6205825431
[2024-05-17 13:35:42] 2024-05-17 20:35:41,920 [wrapper] cleanup: SIGTERM to supervisor_pilot  65541 197991
[2024-05-17 13:35:42] 2024-05-17 20:35:41,922 [wrapper] Test setup, not cleaning
[2024-05-17 13:35:42] 2024-05-17 20:35:41,924 [wrapper] ==== wrapper stdout END ====
[2024-05-17 13:35:42] 2024-05-17 20:35:41,927 [wrapper] ==== wrapper stderr END ====
[2024-05-17 13:35:42] 2024-05-17 20:35:41,933 [wrapper] apfmon messages muted
[2024-05-17 13:35:42]  *** Error codes and diagnostics ***
[2024-05-17 13:35:42]     "exeErrorCode": 0,
[2024-05-17 13:35:42]     "exeErrorDiag": "",
[2024-05-17 13:35:42]     "pilotErrorCode": 0,
[2024-05-17 13:35:42]     "pilotErrorDiag": "",
[2024-05-17 13:35:42]  *** Listing of results directory ***
[2024-05-17 13:35:42] total 868988
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc    467845 May 13 01:49 pilot3.tar.gz
[2024-05-17 13:35:42] -rwx------ 1 boinc boinc     32251 May 13 02:00 runpilot2-wrapper.sh
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc      5633 May 13 02:00 queuedata.json
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc       100 May 17 12:21 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 13:35:42] -rwxr-xr-x 1 boinc boinc      7986 May 17 12:21 run_atlas
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc       105 May 17 12:21 job.xml
[2024-05-17 13:35:42] -rw-r--r-- 2 boinc boinc 612597914 May 17 12:21 EVNT.38776140._000146.pool.root.1
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc      6626 May 17 12:21 init_data.xml
[2024-05-17 13:35:42] -rw-r--r-- 2 boinc boinc     17537 May 17 12:21 start_atlas.sh
[2024-05-17 13:35:42] drwxrwx--x 2 boinc boinc      4096 May 17 12:21 shared
[2024-05-17 13:35:42] -rw-r--r-- 2 boinc boinc    479990 May 17 12:21 input.tar.gz
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc         0 May 17 12:21 boinc_lockfile
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc      2614 May 17 12:21 pandaJob.out
[2024-05-17 13:35:42] -rw------- 1 boinc boinc       424 May 17 12:21 setup.sh.local
[2024-05-17 13:35:42] -rw------- 1 boinc boinc   1019073 May 17 12:21 agis_schedconf.cvmfs.json
[2024-05-17 13:35:42] -rw------- 1 boinc boinc         0 May 17 12:21 agis_ddmendpoints.agis.ALL.json
[2024-05-17 13:35:42] -rw------- 1 boinc boinc   1324701 May 17 12:21 cric_ddmendpoints.json
[2024-05-17 13:35:42] drwx------ 4 boinc boinc      4096 May 17 12:21 pilot3
[2024-05-17 13:35:42] -rw------- 1 boinc boinc 272125542 May 17 13:34 HITS.38776146._003640.pool.root.1
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc       530 May 17 13:34 boinc_task_state.xml
[2024-05-17 13:35:42] -rw------- 1 boinc boinc        95 May 17 13:34 pilot_heartbeat.json
[2024-05-17 13:35:42] -rw------- 1 boinc boinc      1048 May 17 13:35 memory_monitor_summary.json
[2024-05-17 13:35:42] -rw------- 1 boinc boinc    354288 May 17 13:35 log.38776146._003640.job.log.tgz.1
[2024-05-17 13:35:42] -rw------- 1 boinc boinc      7759 May 17 13:35 heartbeat.json
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc        27 May 17 13:35 wrapper_checkpoint.txt
[2024-05-17 13:35:42] -rw------- 1 boinc boinc      4333 May 17 13:35 pilotlog.txt
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc      8192 May 17 13:35 boinc_mmap_file
[2024-05-17 13:35:42] -rw------- 1 boinc boinc    439334 May 17 13:35 log.38776146._003640.job.log.1
[2024-05-17 13:35:42] -rw------- 1 boinc boinc       357 May 17 13:35 output.list
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc       620 May 17 13:35 runtime_log
[2024-05-17 13:35:42] -rw------- 1 boinc boinc    808960 May 17 13:35 result.tar.gz
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc     11286 May 17 13:35 runtime_log.err
[2024-05-17 13:35:42] -rw------- 1 boinc boinc       652 May 17 13:35 BHDMDmYigQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmf5JKDmxpf7sn.diag
[2024-05-17 13:35:42] -rw-r--r-- 1 boinc boinc     21488 May 17 13:35 stderr.txt
[2024-05-17 13:35:42] HITS file was successfully produced:
[2024-05-17 13:35:42] -rw------- 1 boinc boinc 272125542 May 17 13:34 shared/HITS.pool.root.1
[2024-05-17 13:35:42]  *** Contents of shared directory: ***
[2024-05-17 13:35:42] total 865284
[2024-05-17 13:35:42] -rw-r--r-- 2 boinc boinc 612597914 May 17 12:21 ATLAS.root_0
[2024-05-17 13:35:42] -rw-r--r-- 2 boinc boinc     17537 May 17 12:21 start_atlas.sh
[2024-05-17 13:35:42] -rw-r--r-- 2 boinc boinc    479990 May 17 12:21 input.tar.gz
[2024-05-17 13:35:42] -rw------- 1 boinc boinc 272125542 May 17 13:34 HITS.pool.root.1
[2024-05-17 13:35:42] -rw------- 1 boinc boinc    808960 May 17 13:35 result.tar.gz
13:35:44 (193799): run_atlas exited; CPU time 40687.140481
13:35:44 (193799): called boinc_finish(0)

</stderr_txt>
]]>

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