Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:22:12 (3563588): wrapper (7.7.26015): starting
10:22:12 (3563588): wrapper: running run_atlas (--nthreads 4)
[2024-05-17 10:22:12] Arguments: --nthreads 4
[2024-05-17 10:22:12] Threads: 4
[2024-05-17 10:22:12] Checking for CVMFS
[2024-05-17 10:22:12] No cvmfs_config command found, will try listing directly
[2024-05-17 10:22:12] CVMFS is ok
[2024-05-17 10:22:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 10:22:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 10:22:12] Further information can be found at the LHC@home message board.
[2024-05-17 10:22:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 10:22:12] Checking for apptainer binary...
[2024-05-17 10:22:12] which: no apptainer in ((null))
[2024-05-17 10:22:12] apptainer is not installed, using version from CVMFS
[2024-05-17 10:22:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 10:22:13] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2024-05-17 10:22:13] apptainer works
[2024-05-17 10:22:13] Set ATHENA_PROC_NUMBER=4
[2024-05-17 10:22:13] Set ATHENA_CORE_NUMBER=4
[2024-05-17 10:22:13] Starting ATLAS job with PandaID=6205822287
[2024-05-17 10:22:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 13:49:53]  *** The last 200 lines of the pilot log: ***
[2024-05-17 13:49:53] 2024-05-17 11:49:31,804 | INFO     | fitting pss+swap vs Time
[2024-05-17 13:49:53] 2024-05-17 11:49:31,805 | INFO     | model: linear, x: [1715934168.0, 1715934229.0, 1715934290.0, 1715934351.0, 1715934412.0, 1715934473.0, 1715934534.0, 1715934595.0, 1715934656.0, 1715934717.0, 1715
[2024-05-17 13:49:53] 2024-05-17 11:49:31,805 | INFO     | sum of square deviations: 2632440055.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,806 | INFO     | sum of deviations: 83831882058.5
[2024-05-17 13:49:53] 2024-05-17 11:49:31,806 | INFO     | mean x: 1715940359.5
[2024-05-17 13:49:53] 2024-05-17 11:49:31,806 | INFO     | mean y: 2268738.7696078434
[2024-05-17 13:49:53] 2024-05-17 11:49:31,806 | INFO     | -- intersect: -54643043910.913536
[2024-05-17 13:49:53] 2024-05-17 11:49:31,807 | INFO     | intersect: -54643043910.913536
[2024-05-17 13:49:53] 2024-05-17 11:49:31,807 | INFO     | chi2: 5.12248949239348
[2024-05-17 13:49:53] 2024-05-17 11:49:31,807 | INFO     | model: linear, x: [1715934168.0, 1715934229.0, 1715934290.0, 1715934351.0, 1715934412.0, 1715934473.0, 1715934534.0, 1715934595.0, 1715934656.0, 1715934717.0, 1715
[2024-05-17 13:49:53] 2024-05-17 11:49:31,807 | INFO     | sum of square deviations: 2443580700.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,809 | INFO     | sum of deviations: 94381929872.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,809 | INFO     | mean x: 1715940207.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,809 | INFO     | mean y: 2277050.5929648243
[2024-05-17 13:49:53] 2024-05-17 11:49:31,809 | INFO     | -- intersect: -66274948122.129654
[2024-05-17 13:49:53] 2024-05-17 11:49:31,809 | INFO     | intersect: -66274948122.129654
[2024-05-17 13:49:53] 2024-05-17 11:49:31,809 | INFO     | chi2: 4.342431387293603
[2024-05-17 13:49:53] 2024-05-17 11:49:31,809 | INFO     | current chi2=4.342431387293603 (change=15.228105518970917 %)
[2024-05-17 13:49:53] 2024-05-17 11:49:31,809 | INFO     | right removable region: 198
[2024-05-17 13:49:53] 2024-05-17 11:49:31,810 | INFO     | model: linear, x: [1715934473.0, 1715934534.0, 1715934595.0, 1715934656.0, 1715934717.0, 1715934778.0, 1715934839.0, 1715934900.0, 1715934961.0, 1715935022.0, 1715
[2024-05-17 13:49:53] 2024-05-17 11:49:31,810 | INFO     | sum of square deviations: 2443580700.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,811 | INFO     | sum of deviations: 35437643475.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,811 | INFO     | mean x: 1715940512.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,811 | INFO     | mean y: 2307717.6532663316
[2024-05-17 13:49:53] 2024-05-17 11:49:31,811 | INFO     | -- intersect: -24882848761.34698
[2024-05-17 13:49:53] 2024-05-17 11:49:31,811 | INFO     | intersect: -24882848761.34698
[2024-05-17 13:49:53] 2024-05-17 11:49:31,811 | INFO     | chi2: 2.491881217134338
[2024-05-17 13:49:53] 2024-05-17 11:49:31,811 | INFO     | current chi2=2.491881217134338 (change=51.35409802529418 %)
[2024-05-17 13:49:53] 2024-05-17 11:49:31,812 | INFO     | model: linear, x: [1715934778.0, 1715934839.0, 1715934900.0, 1715934961.0, 1715935022.0, 1715935083.0, 1715935144.0, 1715935205.0, 1715935266.0, 1715935327.0, 1715
[2024-05-17 13:49:53] 2024-05-17 11:49:31,812 | INFO     | sum of square deviations: 2263977332.5
[2024-05-17 13:49:53] 2024-05-17 11:49:31,812 | INFO     | sum of deviations: -4069741270.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,812 | INFO     | mean x: 1715940664.5
[2024-05-17 13:49:53] 2024-05-17 11:49:31,813 | INFO     | mean y: 2341267.030927835
[2024-05-17 13:49:53] 2024-05-17 11:49:31,813 | INFO     | -- intersect: 3086928042.233048
[2024-05-17 13:49:53] 2024-05-17 11:49:31,813 | INFO     | intersect: 3086928042.233048
[2024-05-17 13:49:53] 2024-05-17 11:49:31,813 | INFO     | chi2: 0.881482719681583
[2024-05-17 13:49:53] 2024-05-17 11:49:31,813 | INFO     | current chi2=0.881482719681583 (change=64.62581307566147 %)
[2024-05-17 13:49:53] 2024-05-17 11:49:31,813 | INFO     | model: linear, x: [1715935083.0, 1715935144.0, 1715935205.0, 1715935266.0, 1715935327.0, 1715935388.0, 1715935449.0, 1715935510.0, 1715935571.0, 1715935632.0, 1715
[2024-05-17 13:49:53] 2024-05-17 11:49:31,813 | INFO     | sum of square deviations: 2093397390.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,814 | INFO     | sum of deviations: -9917834389.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,814 | INFO     | mean x: 1715940817.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,814 | INFO     | mean y: 2346438.687830688
[2024-05-17 13:49:53] 2024-05-17 11:49:31,814 | INFO     | -- intersect: 8131914635.164543
[2024-05-17 13:49:53] 2024-05-17 11:49:31,814 | INFO     | intersect: 8131914635.164543
[2024-05-17 13:49:53] 2024-05-17 11:49:31,814 | INFO     | chi2: 0.822636116182315
[2024-05-17 13:49:53] 2024-05-17 11:49:31,814 | INFO     | current chi2=0.822636116182315 (change=6.6758658094313015 %)
[2024-05-17 13:49:53] 2024-05-17 11:49:31,814 | INFO     | left removable region: 30
[2024-05-17 13:49:53] 2024-05-17 11:49:31,814 | INFO     | model: linear, x: [1715935998.0, 1715936059.0, 1715936120.0, 1715936181.0, 1715936242.0, 1715936303.0, 1715936364.0, 1715936425.0, 1715936486.0, 1715936547.0, 1715
[2024-05-17 13:49:53] 2024-05-17 11:49:31,814 | INFO     | sum of square deviations: 1470248962.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,815 | INFO     | sum of deviations: 1094273754.0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,815 | INFO     | mean x: 1715941091.5
[2024-05-17 13:49:53] 2024-05-17 11:49:31,815 | INFO     | mean y: 2358519.0833333335
[2024-05-17 13:49:53] 2024-05-17 11:49:31,815 | INFO     | -- intersect: -1274778447.7636209
[2024-05-17 13:49:53] 2024-05-17 11:49:31,815 | INFO     | intersect: -1274778447.7636209
[2024-05-17 13:49:53] 2024-05-17 11:49:31,815 | INFO     | chi2: 0.0006139044456976121
[2024-05-17 13:49:53] 2024-05-17 11:49:31,815 | INFO     | -- intersect: -1274778447.7636209
[2024-05-17 13:49:53] 2024-05-17 11:49:31,816 | INFO     | current memory leak: 0.74 B/s (using 168 data points, chi2=0.00)
[2024-05-17 13:49:53] 2024-05-17 11:49:31,816 | INFO     | ..............................
[2024-05-17 13:49:53] 2024-05-17 11:49:31,816 | INFO     | . Timing measurements:
[2024-05-17 13:49:53] 2024-05-17 11:49:31,816 | INFO     | . get job = 0 s
[2024-05-17 13:49:53] 2024-05-17 11:49:31,816 | INFO     | . initial setup = 1 s
[2024-05-17 13:49:53] 2024-05-17 11:49:31,816 | INFO     | . payload setup = 5 s
[2024-05-17 13:49:53] 2024-05-17 11:49:31,816 | INFO     | . stage-in = 0 s
[2024-05-17 13:49:53] 2024-05-17 11:49:31,816 | INFO     | . payload execution = 12397 s
[2024-05-17 13:49:53] 2024-05-17 11:49:31,816 | INFO     | . stage-out = 0 s
[2024-05-17 13:49:53] 2024-05-17 11:49:31,816 | INFO     | . log creation = 0 s
[2024-05-17 13:49:53] 2024-05-17 11:49:31,816 | INFO     | ..............................
[2024-05-17 13:49:53] 2024-05-17 11:49:31,878 | INFO     | 
[2024-05-17 13:49:53] 2024-05-17 11:49:31,879 | INFO     | job summary report
[2024-05-17 13:49:53] 2024-05-17 11:49:31,879 | INFO     | --------------------------------------------------
[2024-05-17 13:49:53] 2024-05-17 11:49:31,879 | INFO     | PanDA job id: 6205822287
[2024-05-17 13:49:53] 2024-05-17 11:49:31,879 | INFO     | task id: 38776146
[2024-05-17 13:49:53] 2024-05-17 11:49:31,879 | INFO     | errors: (none)
[2024-05-17 13:49:53] 2024-05-17 11:49:31,879 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 13:49:53] 2024-05-17 11:49:31,879 | INFO     | pilot state: finished 
[2024-05-17 13:49:53] 2024-05-17 11:49:31,879 | INFO     | transexitcode: 0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,879 | INFO     | exeerrorcode: 0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,880 | INFO     | exeerrordiag: 
[2024-05-17 13:49:53] 2024-05-17 11:49:31,880 | INFO     | exitcode: 0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,880 | INFO     | exitmsg: OK
[2024-05-17 13:49:53] 2024-05-17 11:49:31,880 | INFO     | cpuconsumptiontime: 46757 s
[2024-05-17 13:49:53] 2024-05-17 11:49:31,880 | INFO     | nevents: 400
[2024-05-17 13:49:53] 2024-05-17 11:49:31,880 | INFO     | neventsw: 0
[2024-05-17 13:49:53] 2024-05-17 11:49:31,880 | INFO     | pid: 3593893
[2024-05-17 13:49:53] 2024-05-17 11:49:31,880 | INFO     | pgrp: 3593893
[2024-05-17 13:49:53] 2024-05-17 11:49:31,880 | INFO     | corecount: 4
[2024-05-17 13:49:53] 2024-05-17 11:49:31,880 | INFO     | event service: False
[2024-05-17 13:49:53] 2024-05-17 11:49:31,880 | INFO     | sizes: {0: 2392136, 4: 2392342, 11: 2392370, 12405: 2422125, 12406: 2422124, 12407: 2431164, 12409: 2431348, 12414: 2431518}
[2024-05-17 13:49:53] 2024-05-17 11:49:31,881 | INFO     | --------------------------------------------------
[2024-05-17 13:49:53] 2024-05-17 11:49:31,881 | INFO     | 
[2024-05-17 13:49:53] 2024-05-17 11:49:31,881 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/1
[2024-05-17 13:49:53] 2024-05-17 11:49:31,906 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,906 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,906 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,906 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,907 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,907 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,907 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,907 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,907 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,907 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,907 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,907 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,907 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,907 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,907 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,908 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,908 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,908 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 13:49:53] 2024-05-17 11:49:31,908 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,908 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 13:49:53] 2024-05-17 11:49:31,908 | INFO     | job 6205822287 has completed (purged errors)
[2024-05-17 13:49:53] 2024-05-17 11:49:31,908 | INFO     | overall cleanup function is called
[2024-05-17 13:49:53] 2024-05-17 11:49:32,916 | INFO     | --- collectZombieJob: --- 10, [3593893]
[2024-05-17 13:49:53] 2024-05-17 11:49:32,917 | INFO     | zombie collector waiting for pid 3593893
[2024-05-17 13:49:53] 2024-05-17 11:49:32,917 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 13:49:53] 2024-05-17 11:49:33,922 | INFO     | collected zombie processes
[2024-05-17 13:49:53] 2024-05-17 11:49:33,922 | INFO     | will now attempt to kill all subprocesses of pid=3593893
[2024-05-17 13:49:53] 2024-05-17 11:49:34,153 | INFO     | process IDs to be killed: [3593893] (in reverse order)
[2024-05-17 13:49:53] 2024-05-17 11:49:34,322 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 13:49:53] 2024-05-17 11:49:34,322 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 13:49:53] 2024-05-17 11:49:34,338 | INFO     | did not find any defunct processes belonging to 3593893
[2024-05-17 13:49:53] 2024-05-17 11:49:34,348 | INFO     | did not find any defunct processes belonging to 3593893
[2024-05-17 13:49:53] 2024-05-17 11:49:34,348 | INFO     | ready for new job
[2024-05-17 13:49:53] 2024-05-17 11:49:34,348 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 13:49:53] 2024-05-17 11:49:34,350 | INFO     | *************************************
[2024-05-17 13:49:53] 2024-05-17 11:49:34,350 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 13:49:53] 2024-05-17 11:49:34,350 | INFO     | *************************************
[2024-05-17 13:49:53] 2024-05-17 11:49:34,350 | INFO     | 
[2024-05-17 13:49:53] 2024-05-17 11:49:34,355 | INFO     | architecture information:
[2024-05-17 13:49:53] 2024-05-17 11:49:34,355 | INFO     | executing command: cat /etc/os-release
[2024-05-17 13:49:53] 2024-05-17 11:49:34,373 | INFO     | cat /etc/os-release:
[2024-05-17 13:49:53] NAME="CentOS Linux"
[2024-05-17 13:49:53] VERSION="7 (Core)"
[2024-05-17 13:49:53] ID="centos"
[2024-05-17 13:49:53] ID_LIKE="rhel fedora"
[2024-05-17 13:49:53] VERSION_ID="7"
[2024-05-17 13:49:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 13:49:53] ANSI_COLOR="0;31"
[2024-05-17 13:49:53] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 13:49:53] HOME_URL="https://www.centos.org/"
[2024-05-17 13:49:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 13:49:53] 
[2024-05-17 13:49:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 13:49:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 13:49:53] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 13:49:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 13:49:53] 
[2024-05-17 13:49:53] 2024-05-17 11:49:34,374 | INFO     | *************************************
[2024-05-17 13:49:53] 2024-05-17 11:49:34,877 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/1
[2024-05-17 13:49:53] 2024-05-17 11:49:34,899 | INFO     | sufficient remaining disk space (2983031996416 B)
[2024-05-17 13:49:53] 2024-05-17 11:49:34,899 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 13:49:53] 2024-05-17 11:49:34,900 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 13:49:53] 2024-05-17 11:49:34,945 | INFO     | all payload control threads have been joined
[2024-05-17 13:49:53] 2024-05-17 11:49:35,209 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-17 13:49:53] 2024-05-17 11:49:35,209 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-17 13:49:53] 2024-05-17 11:49:35,210 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 13:49:53] 2024-05-17 11:49:35,210 | INFO     | will abort loop
[2024-05-17 13:49:53] 2024-05-17 11:49:35,491 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 13:49:53] 2024-05-17 11:49:35,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 13:49:53] 2024-05-17 11:49:35,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 13:49:53] 2024-05-17 11:49:35,678 | INFO     | all data control threads have been joined
[2024-05-17 13:49:53] 2024-05-17 11:49:35,786 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 13:49:53] 2024-05-17 11:49:35,905 | INFO     | [job] retrieve thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:35,948 | INFO     | [payload] control thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:36,010 | INFO     | [payload] validate_post thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:36,176 | INFO     | all job control threads have been joined
[2024-05-17 13:49:53] 2024-05-17 11:49:36,215 | INFO     | [job] job monitor thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:36,247 | INFO     | [data] copytool_in thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:36,564 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:36,570 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:36,666 | INFO     | [payload] failed_post thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:36,684 | INFO     | [data] control thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:36,715 | INFO     | [job] validate thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:36,889 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 13:49:53] 2024-05-17 11:49:36,898 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:37,182 | INFO     | [job] control thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:37,318 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 13:49:53] 2024-05-17 11:49:37,792 | INFO     | [data] copytool_out thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:37,895 | INFO     | [job] queue monitor thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:41,323 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:45,317 | INFO     | job.realtimelogging is not enabled
[2024-05-17 13:49:53] 2024-05-17 11:49:46,322 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 13:49:53] 2024-05-17 11:49:47,704 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47434316919872)>', '<ExcThread(monitor, started 47434895984384)>']
[2024-05-17 13:49:53] 2024-05-17 11:49:48,551 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 13:49:53] 2024-05-17 11:49:48,551 | INFO     | [monitor] control thread has ended
[2024-05-17 13:49:53] 2024-05-17 11:49:52,729 | INFO     | all workflow threads have been joined
[2024-05-17 13:49:53] 2024-05-17 11:49:52,729 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 13:49:53] 2024-05-17 11:49:52,729 | INFO     | traces error code: 0
[2024-05-17 13:49:53] 2024-05-17 11:49:52,730 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 13:49:53] 2024-05-17 11:49:52,825 [wrapper] ==== pilot stdout END ====
[2024-05-17 13:49:53] 2024-05-17 11:49:52,827 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 13:49:53] 2024-05-17 11:49:52,829 [wrapper] pilotpid: 3571890
[2024-05-17 13:49:53] 2024-05-17 11:49:52,830 [wrapper] Pilot exit status: 0
[2024-05-17 13:49:53] 2024-05-17 11:49:52,839 [wrapper] pandaids: 6205822287
[2024-05-17 13:49:53] 2024-05-17 11:49:52,935 [wrapper] cleanup: SIGTERM to supervisor_pilot  387974 3571891
[2024-05-17 13:49:53] 2024-05-17 11:49:52,937 [wrapper] Test setup, not cleaning
[2024-05-17 13:49:53] 2024-05-17 11:49:52,939 [wrapper] ==== wrapper stdout END ====
[2024-05-17 13:49:53] 2024-05-17 11:49:52,941 [wrapper] ==== wrapper stderr END ====
[2024-05-17 13:49:53] 2024-05-17 11:49:52,944 [wrapper] apfmon messages muted
[2024-05-17 13:49:53]  *** Error codes and diagnostics ***
[2024-05-17 13:49:53]     "exeErrorCode": 0,
[2024-05-17 13:49:53]     "exeErrorDiag": "",
[2024-05-17 13:49:53]     "pilotErrorCode": 0,
[2024-05-17 13:49:53]     "pilotErrorDiag": "",
[2024-05-17 13:49:53]  *** Listing of results directory ***
[2024-05-17 13:49:53] total 873284
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc    467845 May 13 09:46 pilot3.tar.gz
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc      5633 May 13 10:09 queuedata.json
[2024-05-17 13:49:53] -rwx------ 1 boinc boinc     32251 May 13 10:09 runpilot2-wrapper.sh
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc       100 May 17 10:22 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 13:49:53] -rwxr-xr-x 1 boinc boinc      7986 May 17 10:22 run_atlas
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc       105 May 17 10:22 job.xml
[2024-05-17 13:49:53] -rw-r--r-- 2 boinc boinc     17537 May 17 10:22 start_atlas.sh
[2024-05-17 13:49:53] drwxrwx--x 2 boinc boinc      4096 May 17 10:22 shared
[2024-05-17 13:49:53] -rw-r--r-- 2 boinc boinc    479989 May 17 10:22 input.tar.gz
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc      6646 May 17 10:22 init_data.xml
[2024-05-17 13:49:53] -rw-r--r-- 2 boinc boinc 611211472 May 17 10:22 EVNT.38776140._000102.pool.root.1
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc         0 May 17 10:22 boinc_lockfile
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc      2613 May 17 10:22 pandaJob.out
[2024-05-17 13:49:53] -rw------- 1 boinc boinc       424 May 17 10:22 setup.sh.local
[2024-05-17 13:49:53] -rw------- 1 boinc boinc   1019364 May 17 10:22 agis_schedconf.cvmfs.json
[2024-05-17 13:49:53] -rw------- 1 boinc boinc   1324701 May 17 10:22 cric_ddmendpoints.json
[2024-05-17 13:49:53] drwx------ 4 boinc boinc      4096 May 17 10:22 pilot3
[2024-05-17 13:49:53] -rw------- 1 boinc boinc 276239938 May 17 13:48 HITS.38776146._002544.pool.root.1
[2024-05-17 13:49:53] -rw------- 1 boinc boinc        95 May 17 13:48 pilot_heartbeat.json
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc       531 May 17 13:49 boinc_task_state.xml
[2024-05-17 13:49:53] -rw------- 1 boinc boinc      1042 May 17 13:49 memory_monitor_summary.json
[2024-05-17 13:49:53] -rw------- 1 boinc boinc         0 May 17 13:49 agis_ddmendpoints.agis.ALL.json
[2024-05-17 13:49:53] -rw------- 1 boinc boinc    327212 May 17 13:49 log.38776146._002544.job.log.tgz.1
[2024-05-17 13:49:53] -rw------- 1 boinc boinc      7718 May 17 13:49 heartbeat.json
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc      8192 May 17 13:49 boinc_mmap_file
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc        28 May 17 13:49 wrapper_checkpoint.txt
[2024-05-17 13:49:53] -rw------- 1 boinc boinc      4481 May 17 13:49 pilotlog.txt
[2024-05-17 13:49:53] -rw------- 1 boinc boinc   1302070 May 17 13:49 log.38776146._002544.job.log.1
[2024-05-17 13:49:53] -rw------- 1 boinc boinc       357 May 17 13:49 output.list
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc       620 May 17 13:49 runtime_log
[2024-05-17 13:49:53] -rw------- 1 boinc boinc   1648640 May 17 13:49 result.tar.gz
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc     11429 May 17 13:49 runtime_log.err
[2024-05-17 13:49:53] -rw------- 1 boinc boinc       657 May 17 13:49 WpkKDmsvfQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDm9vJKDmXZx3Km.diag
[2024-05-17 13:49:53] -rw-r--r-- 1 boinc boinc     21309 May 17 13:49 stderr.txt
[2024-05-17 13:49:53] HITS file was successfully produced:
[2024-05-17 13:49:53] -rw------- 1 boinc boinc 276239938 May 17 13:48 shared/HITS.pool.root.1
[2024-05-17 13:49:53]  *** Contents of shared directory: ***
[2024-05-17 13:49:53] total 868768
[2024-05-17 13:49:53] -rw-r--r-- 2 boinc boinc     17537 May 17 10:22 start_atlas.sh
[2024-05-17 13:49:53] -rw-r--r-- 2 boinc boinc    479989 May 17 10:22 input.tar.gz
[2024-05-17 13:49:53] -rw-r--r-- 2 boinc boinc 611211472 May 17 10:22 ATLAS.root_0
[2024-05-17 13:49:53] -rw------- 1 boinc boinc 276239938 May 17 13:48 HITS.pool.root.1
[2024-05-17 13:49:53] -rw------- 1 boinc boinc   1648640 May 17 13:49 result.tar.gz
13:49:55 (3563588): run_atlas exited; CPU time 46472.487057
13:49:55 (3563588): called boinc_finish(0)

</stderr_txt>
]]>

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