Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:35:55 (1344912): wrapper (7.7.26015): starting
11:35:55 (1344912): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 11:35:55] Arguments: --nthreads 4
[2024-05-15 11:35:55] Threads: 4
[2024-05-15 11:35:55] Checking for CVMFS
[2024-05-15 11:35:55] No cvmfs_config command found, will try listing directly
[2024-05-15 11:35:55] CVMFS is ok
[2024-05-15 11:35:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 11:35:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 11:35:55] Further information can be found at the LHC@home message board.
[2024-05-15 11:35:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 11:35:55] Checking for apptainer binary...
[2024-05-15 11:35:55] which: no apptainer in ((null))
[2024-05-15 11:35:55] apptainer is not installed, using version from CVMFS
[2024-05-15 11:35:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 11:35:56] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut31.grid.cesnet.cz
[2024-05-15 11:35:56] apptainer works
[2024-05-15 11:35:56] Set ATHENA_PROC_NUMBER=4
[2024-05-15 11:35:56] Set ATHENA_CORE_NUMBER=4
[2024-05-15 11:35:56] Starting ATLAS job with PandaID=6205822225
[2024-05-15 11:35:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:27:05 (1456720): wrapper (7.7.26015): starting
12:27:05 (1456720): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 12:27:05] Arguments: --nthreads 4
[2024-05-15 12:27:05] Threads: 4
[2024-05-15 12:27:05] This job has been restarted, cleaning up previous attempt
[2024-05-15 12:27:05] Checking for CVMFS
[2024-05-15 12:27:05] No cvmfs_config command found, will try listing directly
[2024-05-15 12:27:05] CVMFS is ok
[2024-05-15 12:27:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 12:27:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 12:27:05] Further information can be found at the LHC@home message board.
[2024-05-15 12:27:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 12:27:05] Checking for apptainer binary...
[2024-05-15 12:27:05] which: no apptainer in ((null))
[2024-05-15 12:27:05] apptainer is not installed, using version from CVMFS
[2024-05-15 12:27:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 12:27:06] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut31.grid.cesnet.cz
[2024-05-15 12:27:06] apptainer works
[2024-05-15 12:27:06] Set ATHENA_PROC_NUMBER=4
[2024-05-15 12:27:06] Set ATHENA_CORE_NUMBER=4
[2024-05-15 12:27:06] Starting ATLAS job with PandaID=6205822225
[2024-05-15 12:27:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 17:24:51]  *** The last 200 lines of the pilot log: ***
[2024-05-15 17:24:51] 2024-05-15 15:24:28,531 | INFO     | sum of square deviations: 7330250928.0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,534 | INFO     | sum of deviations: 145472996908.00003
[2024-05-15 17:24:51] 2024-05-15 15:24:28,534 | INFO     | mean x: 1715777577.0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,534 | INFO     | mean y: 2299560.4529616726
[2024-05-15 17:24:51] 2024-05-15 15:24:28,534 | INFO     | -- intersect: -34048281873.30403
[2024-05-15 17:24:51] 2024-05-15 15:24:28,535 | INFO     | intersect: -34048281873.30403
[2024-05-15 17:24:51] 2024-05-15 15:24:28,535 | INFO     | chi2: 4.73216142453474
[2024-05-15 17:24:51] 2024-05-15 15:24:28,535 | INFO     | current chi2=4.73216142453474 (change=-0.030741351384826247 %)
[2024-05-15 17:24:51] 2024-05-15 15:24:28,535 | INFO     | right removable region: 286
[2024-05-15 17:24:51] 2024-05-15 15:24:28,536 | INFO     | model: linear, x: [1715769159.0, 1715769220.0, 1715769281.0, 1715769342.0, 1715769403.0, 1715769464.0, 1715769525.0, 1715769586.0, 1715769647.0, 1715769708.0, 1715
[2024-05-15 17:24:51] 2024-05-15 15:24:28,536 | INFO     | sum of square deviations: 7330250928.0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,539 | INFO     | sum of deviations: 75529195147.0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,539 | INFO     | mean x: 1715777882.0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,539 | INFO     | mean y: 2329100.5853658537
[2024-05-15 17:24:51] 2024-05-15 15:24:28,539 | INFO     | -- intersect: -17676645841.93305
[2024-05-15 17:24:51] 2024-05-15 15:24:28,539 | INFO     | intersect: -17676645841.93305
[2024-05-15 17:24:51] 2024-05-15 15:24:28,540 | INFO     | chi2: 1.9145772142218564
[2024-05-15 17:24:51] 2024-05-15 15:24:28,540 | INFO     | current chi2=1.9145772142218564 (change=59.52873096844724 %)
[2024-05-15 17:24:51] 2024-05-15 15:24:28,540 | INFO     | model: linear, x: [1715769464.0, 1715769525.0, 1715769586.0, 1715769647.0, 1715769708.0, 1715769769.0, 1715769830.0, 1715769891.0, 1715769952.0, 1715770013.0, 1715
[2024-05-15 17:24:51] 2024-05-15 15:24:28,541 | INFO     | sum of square deviations: 6953769450.5
[2024-05-15 17:24:51] 2024-05-15 15:24:28,543 | INFO     | sum of deviations: 19832395823.000004
[2024-05-15 17:24:51] 2024-05-15 15:24:28,543 | INFO     | mean x: 1715778034.5
[2024-05-15 17:24:51] 2024-05-15 15:24:28,543 | INFO     | mean y: 2351662.8723404254
[2024-05-15 17:24:51] 2024-05-15 15:24:28,543 | INFO     | -- intersect: -4891107829.398607
[2024-05-15 17:24:51] 2024-05-15 15:24:28,544 | INFO     | intersect: -4891107829.398607
[2024-05-15 17:24:51] 2024-05-15 15:24:28,544 | INFO     | chi2: 0.39283714972593825
[2024-05-15 17:24:51] 2024-05-15 15:24:28,544 | INFO     | current chi2=0.39283714972593825 (change=79.48178079171389 %)
[2024-05-15 17:24:51] 2024-05-15 15:24:28,545 | INFO     | model: linear, x: [1715769769.0, 1715769830.0, 1715769891.0, 1715769952.0, 1715770013.0, 1715770074.0, 1715770135.0, 1715770196.0, 1715770257.0, 1715770318.0, 1715
[2024-05-15 17:24:51] 2024-05-15 15:24:28,545 | INFO     | sum of square deviations: 6590404498.0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,547 | INFO     | sum of deviations: -1535193038.9999993
[2024-05-15 17:24:51] 2024-05-15 15:24:28,548 | INFO     | mean x: 1715778187.0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,548 | INFO     | mean y: 2360562.7075812276
[2024-05-15 17:24:51] 2024-05-15 15:24:28,548 | INFO     | -- intersect: 402040237.90047693
[2024-05-15 17:24:51] 2024-05-15 15:24:28,548 | INFO     | intersect: 402040237.90047693
[2024-05-15 17:24:51] 2024-05-15 15:24:28,548 | INFO     | chi2: 0.009447641347668394
[2024-05-15 17:24:51] 2024-05-15 15:24:28,549 | INFO     | current chi2=0.009447641347668394 (change=97.59502344565438 %)
[2024-05-15 17:24:51] 2024-05-15 15:24:28,549 | INFO     | model: linear, x: [1715770074.0, 1715770135.0, 1715770196.0, 1715770257.0, 1715770318.0, 1715770379.0, 1715770440.0, 1715770501.0, 1715770562.0, 1715770623.0, 1715
[2024-05-15 17:24:51] 2024-05-15 15:24:28,549 | INFO     | sum of square deviations: 6239923508.0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,551 | INFO     | sum of deviations: -1690541312.0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,552 | INFO     | mean x: 1715778339.5
[2024-05-15 17:24:51] 2024-05-15 15:24:28,552 | INFO     | mean y: 2360628.1397058824
[2024-05-15 17:24:51] 2024-05-15 15:24:28,552 | INFO     | -- intersect: 467205134.8777701
[2024-05-15 17:24:51] 2024-05-15 15:24:28,552 | INFO     | intersect: 467205134.8777701
[2024-05-15 17:24:51] 2024-05-15 15:24:28,552 | INFO     | chi2: 0.009282736748008528
[2024-05-15 17:24:51] 2024-05-15 15:24:28,553 | INFO     | current chi2=0.009282736748008528 (change=1.7454578724092105 %)
[2024-05-15 17:24:51] 2024-05-15 15:24:28,553 | INFO     | left removable region: 40
[2024-05-15 17:24:51] 2024-05-15 15:24:28,553 | INFO     | model: linear, x: [1715771294.0, 1715771355.0, 1715771416.0, 1715771477.0, 1715771538.0, 1715771599.0, 1715771660.0, 1715771721.0, 1715771782.0, 1715771843.0, 1715
[2024-05-15 17:24:51] 2024-05-15 15:24:28,553 | INFO     | sum of square deviations: 4616114457.5
[2024-05-15 17:24:51] 2024-05-15 15:24:28,555 | INFO     | sum of deviations: 4944903237.5
[2024-05-15 17:24:51] 2024-05-15 15:24:28,555 | INFO     | mean x: 1715778766.5
[2024-05-15 17:24:51] 2024-05-15 15:24:28,556 | INFO     | mean y: 2357093.174796748
[2024-05-15 17:24:51] 2024-05-15 15:24:28,556 | INFO     | -- intersect: -1835630256.4488032
[2024-05-15 17:24:51] 2024-05-15 15:24:28,556 | INFO     | intersect: -1835630256.4488032
[2024-05-15 17:24:51] 2024-05-15 15:24:28,556 | INFO     | chi2: 0.0011305086352377662
[2024-05-15 17:24:51] 2024-05-15 15:24:28,556 | INFO     | -- intersect: -1835630256.4488032
[2024-05-15 17:24:51] 2024-05-15 15:24:28,557 | INFO     | current memory leak: 1.07 B/s (using 246 data points, chi2=0.00)
[2024-05-15 17:24:51] 2024-05-15 15:24:28,557 | INFO     | ..............................
[2024-05-15 17:24:51] 2024-05-15 15:24:28,557 | INFO     | . Timing measurements:
[2024-05-15 17:24:51] 2024-05-15 15:24:28,557 | INFO     | . get job = 0 s
[2024-05-15 17:24:51] 2024-05-15 15:24:28,558 | INFO     | . initial setup = 0 s
[2024-05-15 17:24:51] 2024-05-15 15:24:28,558 | INFO     | . payload setup = 4 s
[2024-05-15 17:24:51] 2024-05-15 15:24:28,558 | INFO     | . stage-in = 0 s
[2024-05-15 17:24:51] 2024-05-15 15:24:28,558 | INFO     | . payload execution = 17806 s
[2024-05-15 17:24:51] 2024-05-15 15:24:28,558 | INFO     | . stage-out = 0 s
[2024-05-15 17:24:51] 2024-05-15 15:24:28,558 | INFO     | . log creation = 0 s
[2024-05-15 17:24:51] 2024-05-15 15:24:28,558 | INFO     | ..............................
[2024-05-15 17:24:51] 2024-05-15 15:24:28,623 | INFO     | 
[2024-05-15 17:24:51] 2024-05-15 15:24:28,624 | INFO     | job summary report
[2024-05-15 17:24:51] 2024-05-15 15:24:28,630 | INFO     | --------------------------------------------------
[2024-05-15 17:24:51] 2024-05-15 15:24:28,630 | WARNING  | process 1482632 is no longer using CPU - aborting
[2024-05-15 17:24:51] 2024-05-15 15:24:28,630 | INFO     | PanDA job id: 6205822225
[2024-05-15 17:24:51] 2024-05-15 15:24:28,631 | INFO     | aborting job monitoring since job object (job id=6205822225) has expired
[2024-05-15 17:24:51] 2024-05-15 15:24:28,631 | INFO     | task id: 38776146
[2024-05-15 17:24:51] 2024-05-15 15:24:28,631 | INFO     | errors: (none)
[2024-05-15 17:24:51] 2024-05-15 15:24:28,631 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 17:24:51] 2024-05-15 15:24:28,631 | INFO     | pilot state: finished 
[2024-05-15 17:24:51] 2024-05-15 15:24:28,631 | INFO     | transexitcode: 0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,632 | INFO     | exeerrorcode: 0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,632 | INFO     | exeerrordiag: 
[2024-05-15 17:24:51] 2024-05-15 15:24:28,632 | INFO     | exitcode: 0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,632 | INFO     | exitmsg: OK
[2024-05-15 17:24:51] 2024-05-15 15:24:28,632 | INFO     | cpuconsumptiontime: 68041 s
[2024-05-15 17:24:51] 2024-05-15 15:24:28,632 | INFO     | nevents: 400
[2024-05-15 17:24:51] 2024-05-15 15:24:28,632 | INFO     | neventsw: 0
[2024-05-15 17:24:51] 2024-05-15 15:24:28,632 | INFO     | pid: 1482632
[2024-05-15 17:24:51] 2024-05-15 15:24:28,633 | INFO     | pgrp: 1482632
[2024-05-15 17:24:51] 2024-05-15 15:24:28,633 | INFO     | corecount: 4
[2024-05-15 17:24:51] 2024-05-15 15:24:28,633 | INFO     | event service: False
[2024-05-15 17:24:51] 2024-05-15 15:24:28,633 | INFO     | sizes: {0: 2392971, 1: 2394518, 4: 2394724, 11: 2394752, 17814: 2427029, 17816: 2436011, 17818: 2436195, 17821: 2436365}
[2024-05-15 17:24:51] 2024-05-15 15:24:28,633 | INFO     | --------------------------------------------------
[2024-05-15 17:24:51] 2024-05-15 15:24:28,633 | INFO     | 
[2024-05-15 17:24:51] 2024-05-15 15:24:28,633 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/1
[2024-05-15 17:24:51] 2024-05-15 15:24:28,651 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,651 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,651 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,651 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,652 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,652 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,652 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,652 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,652 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,652 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,652 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,652 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,653 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,653 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,653 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,653 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,653 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,653 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 17:24:51] 2024-05-15 15:24:28,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,654 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 17:24:51] 2024-05-15 15:24:28,654 | INFO     | job 6205822225 has completed (purged errors)
[2024-05-15 17:24:51] 2024-05-15 15:24:28,654 | INFO     | overall cleanup function is called
[2024-05-15 17:24:51] 2024-05-15 15:24:29,661 | INFO     | --- collectZombieJob: --- 10, [1482632]
[2024-05-15 17:24:51] 2024-05-15 15:24:29,661 | INFO     | zombie collector waiting for pid 1482632
[2024-05-15 17:24:51] 2024-05-15 15:24:29,661 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 17:24:51] 2024-05-15 15:24:30,666 | INFO     | collected zombie processes
[2024-05-15 17:24:51] 2024-05-15 15:24:30,666 | INFO     | will now attempt to kill all subprocesses of pid=1482632
[2024-05-15 17:24:51] 2024-05-15 15:24:30,771 | INFO     | process IDs to be killed: [1482632] (in reverse order)
[2024-05-15 17:24:51] 2024-05-15 15:24:30,839 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 17:24:51] 2024-05-15 15:24:30,839 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 17:24:51] 2024-05-15 15:24:30,845 | INFO     | did not find any defunct processes belonging to 1482632
[2024-05-15 17:24:51] 2024-05-15 15:24:30,849 | INFO     | did not find any defunct processes belonging to 1482632
[2024-05-15 17:24:51] 2024-05-15 15:24:30,850 | INFO     | ready for new job
[2024-05-15 17:24:51] 2024-05-15 15:24:30,850 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 17:24:51] 2024-05-15 15:24:30,851 | INFO     | *************************************
[2024-05-15 17:24:51] 2024-05-15 15:24:30,852 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 17:24:51] 2024-05-15 15:24:30,852 | INFO     | *************************************
[2024-05-15 17:24:51] 2024-05-15 15:24:30,852 | INFO     | 
[2024-05-15 17:24:51] 2024-05-15 15:24:30,853 | INFO     | architecture information:
[2024-05-15 17:24:51] 2024-05-15 15:24:30,853 | INFO     | executing command: cat /etc/os-release
[2024-05-15 17:24:51] 2024-05-15 15:24:30,863 | INFO     | cat /etc/os-release:
[2024-05-15 17:24:51] NAME="CentOS Linux"
[2024-05-15 17:24:51] VERSION="7 (Core)"
[2024-05-15 17:24:51] ID="centos"
[2024-05-15 17:24:51] ID_LIKE="rhel fedora"
[2024-05-15 17:24:51] VERSION_ID="7"
[2024-05-15 17:24:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 17:24:51] ANSI_COLOR="0;31"
[2024-05-15 17:24:51] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 17:24:51] HOME_URL="https://www.centos.org/"
[2024-05-15 17:24:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 17:24:51] 
[2024-05-15 17:24:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 17:24:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 17:24:51] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 17:24:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 17:24:51] 
[2024-05-15 17:24:51] 2024-05-15 15:24:30,863 | INFO     | *************************************
[2024-05-15 17:24:51] 2024-05-15 15:24:31,365 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/1
[2024-05-15 17:24:51] 2024-05-15 15:24:31,382 | INFO     | sufficient remaining disk space (1614634024960 B)
[2024-05-15 17:24:51] 2024-05-15 15:24:31,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 17:24:51] 2024-05-15 15:24:31,383 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 17:24:51] 2024-05-15 15:24:31,383 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-15 17:24:51] 2024-05-15 15:24:31,383 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 17:24:51] 2024-05-15 15:24:31,384 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 17:24:51] 2024-05-15 15:24:31,384 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 17:24:51] 2024-05-15 15:24:31,384 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 17:24:51] 2024-05-15 15:24:31,499 | INFO     | all job control threads have been joined
[2024-05-15 17:24:51] 2024-05-15 15:24:31,595 | INFO     | all data control threads have been joined
[2024-05-15 17:24:51] 2024-05-15 15:24:31,714 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 17:24:51] 2024-05-15 15:24:32,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 17:24:51] 2024-05-15 15:24:32,138 | INFO     | aborting loop
[2024-05-15 17:24:51] 2024-05-15 15:24:32,328 | INFO     | all payload control threads have been joined
[2024-05-15 17:24:51] 2024-05-15 15:24:32,388 | INFO     | [job] retrieve thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:32,411 | INFO     | [payload] failed_post thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:32,475 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:32,501 | INFO     | [job] control thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:32,599 | INFO     | [data] control thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:32,775 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:33,143 | INFO     | [job] job monitor thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:33,333 | INFO     | [payload] control thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:33,498 | INFO     | [job] validate thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:33,522 | INFO     | [payload] validate_post thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:33,565 | INFO     | [data] copytool_in thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:33,633 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 17:24:51] 2024-05-15 15:24:33,719 | INFO     | [data] copytool_out thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:33,723 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:34,637 | INFO     | [job] queue monitor thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:35,390 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:42,302 | INFO     | job.realtimelogging is not enabled
[2024-05-15 17:24:51] 2024-05-15 15:24:43,307 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 17:24:51] 2024-05-15 15:24:45,376 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47718026486848)>', '<ExcThread(monitor, started 47718195308288)>']
[2024-05-15 17:24:51] 2024-05-15 15:24:45,447 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 17:24:51] 2024-05-15 15:24:45,447 | INFO     | [monitor] control thread has ended
[2024-05-15 17:24:51] 2024-05-15 15:24:50,401 | INFO     | all workflow threads have been joined
[2024-05-15 17:24:51] 2024-05-15 15:24:50,401 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 17:24:51] 2024-05-15 15:24:50,402 | INFO     | traces error code: 0
[2024-05-15 17:24:51] 2024-05-15 15:24:50,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 17:24:51] 2024-05-15 15:24:50,465 [wrapper] ==== pilot stdout END ====
[2024-05-15 17:24:51] 2024-05-15 15:24:50,467 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 17:24:51] 2024-05-15 15:24:50,469 [wrapper] pilotpid: 1465101
[2024-05-15 17:24:51] 2024-05-15 15:24:50,471 [wrapper] Pilot exit status: 0
[2024-05-15 17:24:51] 2024-05-15 15:24:50,478 [wrapper] pandaids: 6205822225 6205822225
[2024-05-15 17:24:51] 2024-05-15 15:24:50,523 [wrapper] cleanup: SIGTERM to supervisor_pilot 1937425 1465102
[2024-05-15 17:24:51] 2024-05-15 15:24:50,525 [wrapper] Test setup, not cleaning
[2024-05-15 17:24:51] 2024-05-15 15:24:50,527 [wrapper] ==== wrapper stdout END ====
[2024-05-15 17:24:51] 2024-05-15 15:24:50,529 [wrapper] ==== wrapper stderr END ====
[2024-05-15 17:24:51] 2024-05-15 15:24:50,533 [wrapper] apfmon messages muted
[2024-05-15 17:24:51]  *** Error codes and diagnostics ***
[2024-05-15 17:24:51]     "exeErrorCode": 0,
[2024-05-15 17:24:51]     "exeErrorDiag": "",
[2024-05-15 17:24:51]     "pilotErrorCode": 0,
[2024-05-15 17:24:51]     "pilotErrorDiag": "",
[2024-05-15 17:24:51]  *** Listing of results directory ***
[2024-05-15 17:24:51] total 1467472
[2024-05-15 17:24:51] drwx------ 4 boinc boinc      4096 May  8 14:24 pilot3
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc    467845 May 13 09:46 pilot3.tar.gz
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc      5633 May 13 09:52 queuedata.json
[2024-05-15 17:24:51] -rwx------ 1 boinc boinc     32251 May 13 09:54 runpilot2-wrapper.sh
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc       100 May 15 11:35 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 17:24:51] -rwxr-xr-x 1 boinc boinc      7986 May 15 11:35 run_atlas
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc       105 May 15 11:35 job.xml
[2024-05-15 17:24:51] -rw-r--r-- 3 boinc boinc 611152602 May 15 11:35 EVNT.38776140._000100.pool.root.1
[2024-05-15 17:24:51] -rw-r--r-- 3 boinc boinc 611152602 May 15 11:35 ATLAS.root_0
[2024-05-15 17:24:51] drwxrwx--x 2 boinc boinc      4096 May 15 11:35 shared
[2024-05-15 17:24:51] -rw-r--r-- 2 boinc boinc    479992 May 15 11:35 input.tar.gz
[2024-05-15 17:24:51] -rw-r--r-- 2 boinc boinc     17537 May 15 11:35 start_atlas.sh
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc         0 May 15 11:35 boinc_lockfile
[2024-05-15 17:24:51] -rw------- 1 boinc boinc   1324588 May 15 11:36 cric_ddmendpoints.json
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc      2613 May 15 12:27 pandaJob.out
[2024-05-15 17:24:51] -rw------- 1 boinc boinc       424 May 15 12:27 setup.sh.local
[2024-05-15 17:24:51] -rw------- 1 boinc boinc   1010540 May 15 12:27 agis_schedconf.cvmfs.json
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc      6465 May 15 16:55 init_data.xml
[2024-05-15 17:24:51] -rw------- 1 boinc boinc 272137232 May 15 17:23 HITS.38776146._002507.pool.root.1
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc       531 May 15 17:23 boinc_task_state.xml
[2024-05-15 17:24:51] -rw------- 1 boinc boinc        97 May 15 17:24 pilot_heartbeat.json
[2024-05-15 17:24:51] -rw------- 1 boinc boinc      1049 May 15 17:24 memory_monitor_summary.json
[2024-05-15 17:24:51] -rw------- 1 boinc boinc         0 May 15 17:24 agis_ddmendpoints.agis.ALL.json
[2024-05-15 17:24:51] -rw------- 1 boinc boinc    401446 May 15 17:24 log.38776146._002507.job.log.tgz.1
[2024-05-15 17:24:51] -rw------- 1 boinc boinc      7764 May 15 17:24 heartbeat.json
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc        28 May 15 17:24 wrapper_checkpoint.txt
[2024-05-15 17:24:51] -rw------- 1 boinc boinc      4417 May 15 17:24 pilotlog.txt
[2024-05-15 17:24:51] -rw------- 1 boinc boinc   1953921 May 15 17:24 log.38776146._002507.job.log.1
[2024-05-15 17:24:51] -rw------- 1 boinc boinc       357 May 15 17:24 output.list
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc       620 May 15 17:24 runtime_log
[2024-05-15 17:24:51] -rw------- 1 boinc boinc   2375680 May 15 17:24 result.tar.gz
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc     11487 May 15 17:24 runtime_log.err
[2024-05-15 17:24:51] -rw------- 1 boinc boinc       770 May 15 17:24 FWlKDmPhfQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmnsJKDmCNlaDo.diag
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc      8192 May 15 17:24 boinc_mmap_file
[2024-05-15 17:24:51] -rw-r--r-- 1 boinc boinc     23220 May 15 17:24 stderr.txt
[2024-05-15 17:24:51] HITS file was successfully produced:
[2024-05-15 17:24:51] -rw------- 1 boinc boinc 272137232 May 15 17:23 shared/HITS.pool.root.1
[2024-05-15 17:24:51]  *** Contents of shared directory: ***
[2024-05-15 17:24:51] total 865412
[2024-05-15 17:24:51] -rw-r--r-- 3 boinc boinc 611152602 May 15 11:35 ATLAS.root_0
[2024-05-15 17:24:51] -rw-r--r-- 2 boinc boinc    479992 May 15 11:35 input.tar.gz
[2024-05-15 17:24:51] -rw-r--r-- 2 boinc boinc     17537 May 15 11:35 start_atlas.sh
[2024-05-15 17:24:51] -rw------- 1 boinc boinc 272137232 May 15 17:23 HITS.pool.root.1
[2024-05-15 17:24:51] -rw------- 1 boinc boinc   2375680 May 15 17:24 result.tar.gz
17:24:52 (1456720): run_atlas exited; CPU time 67749.140258
17:24:52 (1456720): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN