Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:47:43 (3765006): wrapper (7.7.26015): starting
10:47:43 (3765006): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 10:47:43] Arguments: --nthreads 4
[2024-05-19 10:47:43] Threads: 4
[2024-05-19 10:47:43] Checking for CVMFS
[2024-05-19 10:47:43] No cvmfs_config command found, will try listing directly
[2024-05-19 10:47:43] CVMFS is ok
[2024-05-19 10:47:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 10:47:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 10:47:43] Further information can be found at the LHC@home message board.
[2024-05-19 10:47:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 10:47:43] Checking for apptainer binary...
[2024-05-19 10:47:43] which: no apptainer in ((null))
[2024-05-19 10:47:43] apptainer is not installed, using version from CVMFS
[2024-05-19 10:47:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 10:47:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2024-05-19 10:47:44] apptainer works
[2024-05-19 10:47:44] Set ATHENA_PROC_NUMBER=4
[2024-05-19 10:47:44] Set ATHENA_CORE_NUMBER=4
[2024-05-19 10:47:44] Starting ATLAS job with PandaID=6205821783
[2024-05-19 10:47:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 14:57:06]  *** The last 200 lines of the pilot log: ***
[2024-05-19 14:57:06] 2024-05-19 12:56:52,588 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-19 14:57:06] 2024-05-19 12:56:52,591 | INFO     | fitting pss+swap vs Time
[2024-05-19 14:57:06] 2024-05-19 12:56:52,591 | INFO     | model: linear, x: [1716108496.0, 1716108557.0, 1716108618.0, 1716108679.0, 1716108740.0, 1716108801.0, 1716108862.0, 1716108923.0, 1716108984.0, 1716109045.0, 1716
[2024-05-19 14:57:06] 2024-05-19 12:56:52,591 | INFO     | sum of square deviations: 4560048290.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,592 | INFO     | sum of deviations: 100396229569.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,592 | INFO     | mean x: 1716115938.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,592 | INFO     | mean y: 2278390.8571428573
[2024-05-19 14:57:06] 2024-05-19 12:56:52,592 | INFO     | -- intersect: -37780560456.77001
[2024-05-19 14:57:06] 2024-05-19 12:56:52,592 | INFO     | intersect: -37780560456.77001
[2024-05-19 14:57:06] 2024-05-19 12:56:52,593 | INFO     | chi2: 4.885726582062534
[2024-05-19 14:57:06] 2024-05-19 12:56:52,593 | INFO     | model: linear, x: [1716108496.0, 1716108557.0, 1716108618.0, 1716108679.0, 1716108740.0, 1716108801.0, 1716108862.0, 1716108923.0, 1716108984.0, 1716109045.0, 1716
[2024-05-19 14:57:06] 2024-05-19 12:56:52,593 | INFO     | sum of square deviations: 4286517580.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,594 | INFO     | sum of deviations: 113585292474.99998
[2024-05-19 14:57:06] 2024-05-19 12:56:52,594 | INFO     | mean x: 1716115785.5
[2024-05-19 14:57:06] 2024-05-19 12:56:52,594 | INFO     | mean y: 2285600.7583333333
[2024-05-19 14:57:06] 2024-05-19 12:56:52,594 | INFO     | -- intersect: -45471810744.131
[2024-05-19 14:57:06] 2024-05-19 12:56:52,594 | INFO     | intersect: -45471810744.131
[2024-05-19 14:57:06] 2024-05-19 12:56:52,594 | INFO     | chi2: 4.098918712955878
[2024-05-19 14:57:06] 2024-05-19 12:56:52,594 | INFO     | current chi2=4.098918712955878 (change=16.10421409980952 %)
[2024-05-19 14:57:06] 2024-05-19 12:56:52,594 | INFO     | right removable region: 239
[2024-05-19 14:57:06] 2024-05-19 12:56:52,595 | INFO     | model: linear, x: [1716108801.0, 1716108862.0, 1716108923.0, 1716108984.0, 1716109045.0, 1716109106.0, 1716109167.0, 1716109228.0, 1716109289.0, 1716109350.0, 1716
[2024-05-19 14:57:06] 2024-05-19 12:56:52,595 | INFO     | sum of square deviations: 4286517580.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,596 | INFO     | sum of deviations: 43240878277.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,596 | INFO     | mean x: 1716116090.5
[2024-05-19 14:57:06] 2024-05-19 12:56:52,596 | INFO     | mean y: 2310184.175
[2024-05-19 14:57:06] 2024-05-19 12:56:52,596 | INFO     | -- intersect: -17309263976.80432
[2024-05-19 14:57:06] 2024-05-19 12:56:52,596 | INFO     | intersect: -17309263976.80432
[2024-05-19 14:57:06] 2024-05-19 12:56:52,596 | INFO     | chi2: 2.3772308594981486
[2024-05-19 14:57:06] 2024-05-19 12:56:52,596 | INFO     | current chi2=2.3772308594981486 (change=51.343350480849296 %)
[2024-05-19 14:57:06] 2024-05-19 12:56:52,596 | INFO     | model: linear, x: [1716109106.0, 1716109167.0, 1716109228.0, 1716109289.0, 1716109350.0, 1716109411.0, 1716109472.0, 1716109533.0, 1716109594.0, 1716109655.0, 1716
[2024-05-19 14:57:06] 2024-05-19 12:56:52,596 | INFO     | sum of square deviations: 4024149870.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,597 | INFO     | sum of deviations: -2983134240.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,597 | INFO     | mean x: 1716116243.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,597 | INFO     | mean y: 2337053.4
[2024-05-19 14:57:06] 2024-05-19 12:56:52,597 | INFO     | -- intersect: 1274507645.8718607
[2024-05-19 14:57:06] 2024-05-19 12:56:52,597 | INFO     | intersect: 1274507645.8718607
[2024-05-19 14:57:06] 2024-05-19 12:56:52,598 | INFO     | chi2: 0.8752419761390762
[2024-05-19 14:57:06] 2024-05-19 12:56:52,598 | INFO     | current chi2=0.8752419761390762 (change=63.1822894843353 %)
[2024-05-19 14:57:06] 2024-05-19 12:56:52,598 | INFO     | model: linear, x: [1716109411.0, 1716109472.0, 1716109533.0, 1716109594.0, 1716109655.0, 1716109716.0, 1716109777.0, 1716109838.0, 1716109899.0, 1716109960.0, 1716
[2024-05-19 14:57:06] 2024-05-19 12:56:52,598 | INFO     | sum of square deviations: 3772712597.5
[2024-05-19 14:57:06] 2024-05-19 12:56:52,599 | INFO     | sum of deviations: -8891270726.5
[2024-05-19 14:57:06] 2024-05-19 12:56:52,599 | INFO     | mean x: 1716116395.5
[2024-05-19 14:57:06] 2024-05-19 12:56:52,599 | INFO     | mean y: 2340596.552173913
[2024-05-19 14:57:06] 2024-05-19 12:56:52,599 | INFO     | -- intersect: 4046766212.403991
[2024-05-19 14:57:06] 2024-05-19 12:56:52,599 | INFO     | intersect: 4046766212.403991
[2024-05-19 14:57:06] 2024-05-19 12:56:52,599 | INFO     | chi2: 0.8240503376508923
[2024-05-19 14:57:06] 2024-05-19 12:56:52,599 | INFO     | current chi2=0.8240503376508923 (change=5.848855503252223 %)
[2024-05-19 14:57:06] 2024-05-19 12:56:52,599 | INFO     | left removable region: 30
[2024-05-19 14:57:06] 2024-05-19 12:56:52,599 | INFO     | model: linear, x: [1716110326.0, 1716110387.0, 1716110448.0, 1716110509.0, 1716110570.0, 1716110631.0, 1716110692.0, 1716110753.0, 1716110814.0, 1716110875.0, 1716
[2024-05-19 14:57:06] 2024-05-19 12:56:52,600 | INFO     | sum of square deviations: 2830787960.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,600 | INFO     | sum of deviations: 4722838502.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,600 | INFO     | mean x: 1716116670.0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,600 | INFO     | mean y: 2350323.4832535884
[2024-05-19 14:57:06] 2024-05-19 12:56:52,600 | INFO     | -- intersect: -2860789550.4760904
[2024-05-19 14:57:06] 2024-05-19 12:56:52,600 | INFO     | intersect: -2860789550.4760904
[2024-05-19 14:57:06] 2024-05-19 12:56:52,601 | INFO     | chi2: 0.00045956449209186236
[2024-05-19 14:57:06] 2024-05-19 12:56:52,601 | INFO     | -- intersect: -2860789550.4760904
[2024-05-19 14:57:06] 2024-05-19 12:56:52,601 | INFO     | current memory leak: 1.67 B/s (using 209 data points, chi2=0.00)
[2024-05-19 14:57:06] 2024-05-19 12:56:52,601 | INFO     | ..............................
[2024-05-19 14:57:06] 2024-05-19 12:56:52,601 | INFO     | . Timing measurements:
[2024-05-19 14:57:06] 2024-05-19 12:56:52,601 | INFO     | . get job = 0 s
[2024-05-19 14:57:06] 2024-05-19 12:56:52,601 | INFO     | . initial setup = 1 s
[2024-05-19 14:57:06] 2024-05-19 12:56:52,601 | INFO     | . payload setup = 4 s
[2024-05-19 14:57:06] 2024-05-19 12:56:52,602 | INFO     | . stage-in = 0 s
[2024-05-19 14:57:06] 2024-05-19 12:56:52,602 | INFO     | . payload execution = 14910 s
[2024-05-19 14:57:06] 2024-05-19 12:56:52,602 | INFO     | . stage-out = 1 s
[2024-05-19 14:57:06] 2024-05-19 12:56:52,602 | INFO     | . log creation = 0 s
[2024-05-19 14:57:06] 2024-05-19 12:56:52,602 | INFO     | ..............................
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | 
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | job summary report
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | --------------------------------------------------
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | PanDA job id: 6205821783
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | task id: 38776146
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | errors: (none)
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | pilot state: finished 
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | transexitcode: 0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | exeerrorcode: 0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | exeerrordiag: 
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | exitcode: 0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | exitmsg: OK
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | cpuconsumptiontime: 56770 s
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | nevents: 400
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | neventsw: 0
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | pid: 3776442
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | pgrp: 3776442
[2024-05-19 14:57:06] 2024-05-19 12:56:52,660 | INFO     | corecount: 4
[2024-05-19 14:57:06] 2024-05-19 12:56:52,661 | INFO     | event service: False
[2024-05-19 14:57:06] 2024-05-19 12:56:52,661 | INFO     | sizes: {0: 2392184, 3: 2392390, 11: 2392418, 14918: 2423373, 14920: 2432355, 14922: 2432411, 14926: 2432709}
[2024-05-19 14:57:06] 2024-05-19 12:56:52,661 | INFO     | --------------------------------------------------
[2024-05-19 14:57:06] 2024-05-19 12:56:52,661 | INFO     | 
[2024-05-19 14:57:06] 2024-05-19 12:56:52,661 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/1
[2024-05-19 14:57:06] 2024-05-19 12:56:52,678 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,678 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,678 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,678 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,678 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,678 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,678 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,678 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | job 6205821783 has completed (purged errors)
[2024-05-19 14:57:06] 2024-05-19 12:56:52,679 | INFO     | overall cleanup function is called
[2024-05-19 14:57:06] 2024-05-19 12:56:53,686 | INFO     | --- collectZombieJob: --- 10, [3776442]
[2024-05-19 14:57:06] 2024-05-19 12:56:53,686 | INFO     | zombie collector waiting for pid 3776442
[2024-05-19 14:57:06] 2024-05-19 12:56:53,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 14:57:06] 2024-05-19 12:56:54,691 | INFO     | collected zombie processes
[2024-05-19 14:57:06] 2024-05-19 12:56:54,691 | INFO     | will now attempt to kill all subprocesses of pid=3776442
[2024-05-19 14:57:06] 2024-05-19 12:56:54,841 | INFO     | process IDs to be killed: [3776442] (in reverse order)
[2024-05-19 14:57:06] 2024-05-19 12:56:54,936 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 14:57:06] 2024-05-19 12:56:54,936 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 14:57:06] 2024-05-19 12:56:54,944 | INFO     | did not find any defunct processes belonging to 3776442
[2024-05-19 14:57:06] 2024-05-19 12:56:54,951 | INFO     | did not find any defunct processes belonging to 3776442
[2024-05-19 14:57:06] 2024-05-19 12:56:54,951 | INFO     | ready for new job
[2024-05-19 14:57:06] 2024-05-19 12:56:54,951 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 14:57:06] 2024-05-19 12:56:54,953 | INFO     | *************************************
[2024-05-19 14:57:06] 2024-05-19 12:56:54,953 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 14:57:06] 2024-05-19 12:56:54,953 | INFO     | *************************************
[2024-05-19 14:57:06] 2024-05-19 12:56:54,953 | INFO     | 
[2024-05-19 14:57:06] 2024-05-19 12:56:54,956 | INFO     | architecture information:
[2024-05-19 14:57:06] 2024-05-19 12:56:54,956 | INFO     | executing command: cat /etc/os-release
[2024-05-19 14:57:06] 2024-05-19 12:56:54,971 | INFO     | cat /etc/os-release:
[2024-05-19 14:57:06] NAME="CentOS Linux"
[2024-05-19 14:57:06] VERSION="7 (Core)"
[2024-05-19 14:57:06] ID="centos"
[2024-05-19 14:57:06] ID_LIKE="rhel fedora"
[2024-05-19 14:57:06] VERSION_ID="7"
[2024-05-19 14:57:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 14:57:06] ANSI_COLOR="0;31"
[2024-05-19 14:57:06] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 14:57:06] HOME_URL="https://www.centos.org/"
[2024-05-19 14:57:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 14:57:06] 
[2024-05-19 14:57:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 14:57:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 14:57:06] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 14:57:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 14:57:06] 
[2024-05-19 14:57:06] 2024-05-19 12:56:54,971 | INFO     | *************************************
[2024-05-19 14:57:06] 2024-05-19 12:56:55,474 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/1
[2024-05-19 14:57:06] 2024-05-19 12:56:55,492 | INFO     | sufficient remaining disk space (566966091776 B)
[2024-05-19 14:57:06] 2024-05-19 12:56:55,492 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 14:57:06] 2024-05-19 12:56:55,492 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 14:57:06] 2024-05-19 12:56:55,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 14:57:06] 2024-05-19 12:56:55,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 14:57:06] 2024-05-19 12:56:55,604 | INFO     | all job control threads have been joined
[2024-05-19 14:57:06] 2024-05-19 12:56:55,669 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-19 14:57:06] 2024-05-19 12:56:55,669 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-19 14:57:06] 2024-05-19 12:56:55,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 14:57:06] 2024-05-19 12:56:55,670 | INFO     | will abort loop
[2024-05-19 14:57:06] 2024-05-19 12:56:56,197 | INFO     | all data control threads have been joined
[2024-05-19 14:57:06] 2024-05-19 12:56:56,305 | INFO     | all payload control threads have been joined
[2024-05-19 14:57:06] 2024-05-19 12:56:56,363 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 14:57:06] 2024-05-19 12:56:56,363 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 14:57:06] 2024-05-19 12:56:56,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 14:57:06] 2024-05-19 12:56:56,497 | INFO     | [job] retrieve thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:56,612 | INFO     | [job] control thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:56,675 | INFO     | [job] job monitor thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:56,708 | INFO     | [data] copytool_in thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:56,864 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:56,887 | INFO     | [payload] failed_post thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:57,203 | INFO     | [data] control thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:57,310 | INFO     | [payload] control thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:57,499 | INFO     | [data] copytool_out thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:57,582 | INFO     | [job] validate thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:57,621 | INFO     | [payload] validate_post thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:57,668 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 14:57:06] 2024-05-19 12:56:57,720 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:57,734 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:57,734 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:58,669 | INFO     | [job] queue monitor thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:56:59,499 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 14:57:06] 2024-05-19 12:57:00,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47799100560448)>', '<ExcThread(monitor, started 47799273912064)>']
[2024-05-19 14:57:06] 2024-05-19 12:57:01,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 14:57:06] 2024-05-19 12:57:01,386 | INFO     | [monitor] control thread has ended
[2024-05-19 14:57:06] 2024-05-19 12:57:05,443 | INFO     | all workflow threads have been joined
[2024-05-19 14:57:06] 2024-05-19 12:57:05,443 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 14:57:06] 2024-05-19 12:57:05,444 | INFO     | traces error code: 0
[2024-05-19 14:57:06] 2024-05-19 12:57:05,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 14:57:06] 2024-05-19 12:57:05,526 [wrapper] ==== pilot stdout END ====
[2024-05-19 14:57:06] 2024-05-19 12:57:05,529 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 14:57:06] 2024-05-19 12:57:05,531 [wrapper] pilotpid: 3769324
[2024-05-19 14:57:06] 2024-05-19 12:57:05,534 [wrapper] Pilot exit status: 0
[2024-05-19 14:57:06] 2024-05-19 12:57:05,542 [wrapper] pandaids: 6205821783
[2024-05-19 14:57:06] 2024-05-19 12:57:05,617 [wrapper] cleanup: SIGTERM to supervisor_pilot  110616 3769325
[2024-05-19 14:57:06] 2024-05-19 12:57:05,620 [wrapper] Test setup, not cleaning
[2024-05-19 14:57:06] 2024-05-19 12:57:05,622 [wrapper] ==== wrapper stdout END ====
[2024-05-19 14:57:06] 2024-05-19 12:57:05,625 [wrapper] ==== wrapper stderr END ====
[2024-05-19 14:57:06] 2024-05-19 12:57:05,629 [wrapper] apfmon messages muted
[2024-05-19 14:57:06]  *** Error codes and diagnostics ***
[2024-05-19 14:57:06]     "exeErrorCode": 0,
[2024-05-19 14:57:06]     "exeErrorDiag": "",
[2024-05-19 14:57:06]     "pilotErrorCode": 0,
[2024-05-19 14:57:06]     "pilotErrorDiag": "",
[2024-05-19 14:57:06]  *** Listing of results directory ***
[2024-05-19 14:57:06] total 873672
[2024-05-19 14:57:06] -rwx------ 1 boinc boinc     32251 May 13 09:46 runpilot2-wrapper.sh
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc      5633 May 13 09:46 queuedata.json
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc    467845 May 13 09:46 pilot3.tar.gz
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc       100 May 19 10:00 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 14:57:06] -rwxr-xr-x 1 boinc boinc      7986 May 19 10:00 run_atlas
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc       105 May 19 10:00 job.xml
[2024-05-19 14:57:06] -rw-r--r-- 2 boinc boinc 610668297 May 19 10:47 EVNT.38776140._000084.pool.root.1
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc      6663 May 19 10:47 init_data.xml
[2024-05-19 14:57:06] drwxrwx--x 2 boinc boinc      4096 May 19 10:47 shared
[2024-05-19 14:57:06] -rw-r--r-- 2 boinc boinc    479986 May 19 10:47 input.tar.gz
[2024-05-19 14:57:06] -rw-r--r-- 2 boinc boinc     17537 May 19 10:47 start_atlas.sh
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc         0 May 19 10:47 boinc_lockfile
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc      2613 May 19 10:47 pandaJob.out
[2024-05-19 14:57:06] -rw------- 1 boinc boinc       424 May 19 10:47 setup.sh.local
[2024-05-19 14:57:06] -rw------- 1 boinc boinc   1014045 May 19 10:47 agis_schedconf.cvmfs.json
[2024-05-19 14:57:06] -rw------- 1 boinc boinc   1324701 May 19 10:47 cric_ddmendpoints.json
[2024-05-19 14:57:06] drwx------ 4 boinc boinc      4096 May 19 10:47 pilot3
[2024-05-19 14:57:06] -rw------- 1 boinc boinc 276484975 May 19 14:56 HITS.38776146._002101.pool.root.1
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc       531 May 19 14:56 boinc_task_state.xml
[2024-05-19 14:57:06] -rw------- 1 boinc boinc        95 May 19 14:56 pilot_heartbeat.json
[2024-05-19 14:57:06] -rw------- 1 boinc boinc      1049 May 19 14:56 memory_monitor_summary.json
[2024-05-19 14:57:06] -rw------- 1 boinc boinc         0 May 19 14:56 agis_ddmendpoints.agis.ALL.json
[2024-05-19 14:57:06] -rw------- 1 boinc boinc    360665 May 19 14:56 log.38776146._002101.job.log.tgz.1
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc        28 May 19 14:56 wrapper_checkpoint.txt
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc      8192 May 19 14:56 boinc_mmap_file
[2024-05-19 14:57:06] -rw------- 1 boinc boinc      7760 May 19 14:56 heartbeat.json
[2024-05-19 14:57:06] -rw------- 1 boinc boinc      4407 May 19 14:57 pilotlog.txt
[2024-05-19 14:57:06] -rw------- 1 boinc boinc   1614737 May 19 14:57 log.38776146._002101.job.log.1
[2024-05-19 14:57:06] -rw------- 1 boinc boinc       357 May 19 14:57 output.list
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc       620 May 19 14:57 runtime_log
[2024-05-19 14:57:06] -rw------- 1 boinc boinc   1996800 May 19 14:57 result.tar.gz
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc     11410 May 19 14:57 runtime_log.err
[2024-05-19 14:57:06] -rw------- 1 boinc boinc       657 May 19 14:57 fpnMDmGZfQ5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmHcGKDmyRMbPm.diag
[2024-05-19 14:57:06] -rw-r--r-- 1 boinc boinc     21286 May 19 14:57 stderr.txt
[2024-05-19 14:57:06] HITS file was successfully produced:
[2024-05-19 14:57:06] -rw------- 1 boinc boinc 276484975 May 19 14:56 shared/HITS.pool.root.1
[2024-05-19 14:57:06]  *** Contents of shared directory: ***
[2024-05-19 14:57:06] total 868816
[2024-05-19 14:57:06] -rw-r--r-- 2 boinc boinc 610668297 May 19 10:47 ATLAS.root_0
[2024-05-19 14:57:06] -rw-r--r-- 2 boinc boinc    479986 May 19 10:47 input.tar.gz
[2024-05-19 14:57:06] -rw-r--r-- 2 boinc boinc     17537 May 19 10:47 start_atlas.sh
[2024-05-19 14:57:06] -rw------- 1 boinc boinc 276484975 May 19 14:56 HITS.pool.root.1
[2024-05-19 14:57:06] -rw------- 1 boinc boinc   1996800 May 19 14:57 result.tar.gz
14:57:08 (3765006): run_atlas exited; CPU time 56430.411421
14:57:08 (3765006): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN