Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:35:33 (2325681): wrapper (7.7.26015): starting
08:35:33 (2325681): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 08:35:33] Arguments: --nthreads 4
[2024-05-19 08:35:33] Threads: 4
[2024-05-19 08:35:33] Checking for CVMFS
[2024-05-19 08:35:33] No cvmfs_config command found, will try listing directly
[2024-05-19 08:35:33] CVMFS is ok
[2024-05-19 08:35:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 08:35:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 08:35:33] Further information can be found at the LHC@home message board.
[2024-05-19 08:35:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 08:35:33] Checking for apptainer binary...
[2024-05-19 08:35:33] which: no apptainer in ((null))
[2024-05-19 08:35:33] apptainer is not installed, using version from CVMFS
[2024-05-19 08:35:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 08:35:34] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2024-05-19 08:35:34] apptainer works
[2024-05-19 08:35:34] Set ATHENA_PROC_NUMBER=4
[2024-05-19 08:35:34] Set ATHENA_CORE_NUMBER=4
[2024-05-19 08:35:34] Starting ATLAS job with PandaID=6205808221
[2024-05-19 08:35:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 11:16:21]  *** The last 200 lines of the pilot log: ***
[2024-05-19 11:16:21] 2024-05-19 09:16:04,293 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-19 11:16:21] 2024-05-19 09:16:04,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-19 11:16:21] 2024-05-19 09:16:04,295 | INFO     | fitting pss+swap vs Time
[2024-05-19 11:16:21] 2024-05-19 09:16:04,295 | INFO     | model: linear, x: [1716100564.0, 1716100625.0, 1716100686.0, 1716100747.0, 1716100808.0, 1716100869.0, 1716100930.0, 1716100991.0, 1716101052.0, 1716101113.0, 1716
[2024-05-19 11:16:21] 2024-05-19 09:16:04,295 | INFO     | sum of square deviations: 1223016419.5
[2024-05-19 11:16:21] 2024-05-19 09:16:04,296 | INFO     | sum of deviations: 30831909967.000008
[2024-05-19 11:16:21] 2024-05-19 09:16:04,296 | INFO     | mean x: 1716105352.5
[2024-05-19 11:16:21] 2024-05-19 09:16:04,296 | INFO     | mean y: 2286218.1518987343
[2024-05-19 11:16:21] 2024-05-19 09:16:04,296 | INFO     | -- intersect: -43260261102.18423
[2024-05-19 11:16:21] 2024-05-19 09:16:04,296 | INFO     | intersect: -43260261102.18423
[2024-05-19 11:16:21] 2024-05-19 09:16:04,296 | INFO     | chi2: 4.506159709614822
[2024-05-19 11:16:21] 2024-05-19 09:16:04,296 | INFO     | model: linear, x: [1716100564.0, 1716100625.0, 1716100686.0, 1716100747.0, 1716100808.0, 1716100869.0, 1716100930.0, 1716100991.0, 1716101052.0, 1716101113.0, 1716
[2024-05-19 11:16:21] 2024-05-19 09:16:04,296 | INFO     | sum of square deviations: 1110539892.0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,297 | INFO     | sum of deviations: 39461220799.00001
[2024-05-19 11:16:21] 2024-05-19 09:16:04,297 | INFO     | mean x: 1716105200.0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,297 | INFO     | mean y: 2297582.1960784313
[2024-05-19 11:16:21] 2024-05-19 09:16:04,297 | INFO     | -- intersect: -60976697138.60956
[2024-05-19 11:16:21] 2024-05-19 09:16:04,297 | INFO     | intersect: -60976697138.60956
[2024-05-19 11:16:21] 2024-05-19 09:16:04,297 | INFO     | chi2: 3.7868334720365926
[2024-05-19 11:16:21] 2024-05-19 09:16:04,297 | INFO     | current chi2=3.7868334720365926 (change=15.963176716604133 %)
[2024-05-19 11:16:21] 2024-05-19 09:16:04,297 | INFO     | right removable region: 152
[2024-05-19 11:16:21] 2024-05-19 09:16:04,297 | INFO     | model: linear, x: [1716100869.0, 1716100930.0, 1716100991.0, 1716101052.0, 1716101113.0, 1716101174.0, 1716101235.0, 1716101296.0, 1716101357.0, 1716101418.0, 1716
[2024-05-19 11:16:21] 2024-05-19 09:16:04,297 | INFO     | sum of square deviations: 1110539892.0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,298 | INFO     | sum of deviations: -3464046711.000004
[2024-05-19 11:16:21] 2024-05-19 09:16:04,298 | INFO     | mean x: 1716105505.0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,298 | INFO     | mean y: 2332497.0261437907
[2024-05-19 11:16:21] 2024-05-19 09:16:04,298 | INFO     | -- intersect: 5355287103.292778
[2024-05-19 11:16:21] 2024-05-19 09:16:04,298 | INFO     | intersect: 5355287103.292778
[2024-05-19 11:16:21] 2024-05-19 09:16:04,298 | INFO     | chi2: 2.117155505303134
[2024-05-19 11:16:21] 2024-05-19 09:16:04,298 | INFO     | current chi2=2.117155505303134 (change=53.01641216165185 %)
[2024-05-19 11:16:21] 2024-05-19 09:16:04,298 | INFO     | model: linear, x: [1716101174.0, 1716101235.0, 1716101296.0, 1716101357.0, 1716101418.0, 1716101479.0, 1716101540.0, 1716101601.0, 1716101662.0, 1716101723.0, 1716
[2024-05-19 11:16:21] 2024-05-19 09:16:04,299 | INFO     | sum of square deviations: 1005179777.0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,299 | INFO     | sum of deviations: -28415227339.0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,299 | INFO     | mean x: 1716105657.5
[2024-05-19 11:16:21] 2024-05-19 09:16:04,299 | INFO     | mean y: 2368618.2027027025
[2024-05-19 11:16:21] 2024-05-19 09:16:04,299 | INFO     | -- intersect: 48514618378.28375
[2024-05-19 11:16:21] 2024-05-19 09:16:04,299 | INFO     | intersect: 48514618378.28375
[2024-05-19 11:16:21] 2024-05-19 09:16:04,299 | INFO     | chi2: 0.9355586058858892
[2024-05-19 11:16:21] 2024-05-19 09:16:04,299 | INFO     | current chi2=0.9355586058858892 (change=55.81058625393999 %)
[2024-05-19 11:16:21] 2024-05-19 09:16:04,299 | INFO     | model: linear, x: [1716101479.0, 1716101540.0, 1716101601.0, 1716101662.0, 1716101723.0, 1716101784.0, 1716101845.0, 1716101906.0, 1716101967.0, 1716102028.0, 1716
[2024-05-19 11:16:21] 2024-05-19 09:16:04,300 | INFO     | sum of square deviations: 906703512.0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,300 | INFO     | sum of deviations: -27665450779.999996
[2024-05-19 11:16:21] 2024-05-19 09:16:04,300 | INFO     | mean x: 1716105810.0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,300 | INFO     | mean y: 2367343.2517482517
[2024-05-19 11:16:21] 2024-05-19 09:16:04,300 | INFO     | -- intersect: 52364402111.48922
[2024-05-19 11:16:21] 2024-05-19 09:16:04,300 | INFO     | intersect: 52364402111.48922
[2024-05-19 11:16:21] 2024-05-19 09:16:04,300 | INFO     | chi2: 0.9036553060921687
[2024-05-19 11:16:21] 2024-05-19 09:16:04,300 | INFO     | current chi2=0.9036553060921687 (change=3.410080308492379 %)
[2024-05-19 11:16:21] 2024-05-19 09:16:04,300 | INFO     | left removable region: 30
[2024-05-19 11:16:21] 2024-05-19 09:16:04,300 | INFO     | model: linear, x: [1716102394.0, 1716102455.0, 1716102516.0, 1716102577.0, 1716102638.0, 1716102699.0, 1716102760.0, 1716102821.0, 1716102882.0, 1716102943.0, 1716
[2024-05-19 11:16:21] 2024-05-19 09:16:04,301 | INFO     | sum of square deviations: 563026370.5
[2024-05-19 11:16:21] 2024-05-19 09:16:04,301 | INFO     | sum of deviations: -2981544976.4999995
[2024-05-19 11:16:21] 2024-05-19 09:16:04,301 | INFO     | mean x: 1716106084.5
[2024-05-19 11:16:21] 2024-05-19 09:16:04,301 | INFO     | mean y: 2353729.024590164
[2024-05-19 11:16:21] 2024-05-19 09:16:04,301 | INFO     | -- intersect: 9090111858.07666
[2024-05-19 11:16:21] 2024-05-19 09:16:04,301 | INFO     | intersect: 9090111858.07666
[2024-05-19 11:16:21] 2024-05-19 09:16:04,301 | INFO     | chi2: 0.02873129311146276
[2024-05-19 11:16:21] 2024-05-19 09:16:04,301 | INFO     | -- intersect: 9090111858.07666
[2024-05-19 11:16:21] 2024-05-19 09:16:04,301 | INFO     | current memory leak: -5.30 B/s (using 122 data points, chi2=0.03)
[2024-05-19 11:16:21] 2024-05-19 09:16:04,302 | INFO     | ..............................
[2024-05-19 11:16:21] 2024-05-19 09:16:04,302 | INFO     | . Timing measurements:
[2024-05-19 11:16:21] 2024-05-19 09:16:04,302 | INFO     | . get job = 0 s
[2024-05-19 11:16:21] 2024-05-19 09:16:04,302 | INFO     | . initial setup = 1 s
[2024-05-19 11:16:21] 2024-05-19 09:16:04,302 | INFO     | . payload setup = 4 s
[2024-05-19 11:16:21] 2024-05-19 09:16:04,302 | INFO     | . stage-in = 0 s
[2024-05-19 11:16:21] 2024-05-19 09:16:04,302 | INFO     | . payload execution = 9593 s
[2024-05-19 11:16:21] 2024-05-19 09:16:04,302 | INFO     | . stage-out = 0 s
[2024-05-19 11:16:21] 2024-05-19 09:16:04,302 | INFO     | . log creation = 0 s
[2024-05-19 11:16:21] 2024-05-19 09:16:04,302 | INFO     | ..............................
[2024-05-19 11:16:21] 2024-05-19 09:16:04,355 | INFO     | 
[2024-05-19 11:16:21] 2024-05-19 09:16:04,355 | INFO     | job summary report
[2024-05-19 11:16:21] 2024-05-19 09:16:04,356 | INFO     | --------------------------------------------------
[2024-05-19 11:16:21] 2024-05-19 09:16:04,356 | INFO     | PanDA job id: 6205808221
[2024-05-19 11:16:21] 2024-05-19 09:16:04,356 | INFO     | task id: 38776125
[2024-05-19 11:16:21] 2024-05-19 09:16:04,356 | INFO     | errors: (none)
[2024-05-19 11:16:21] 2024-05-19 09:16:04,356 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 11:16:21] 2024-05-19 09:16:04,356 | INFO     | pilot state: finished 
[2024-05-19 11:16:21] 2024-05-19 09:16:04,356 | INFO     | transexitcode: 0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,356 | INFO     | exeerrorcode: 0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,356 | INFO     | exeerrordiag: 
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | exitcode: 0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | exitmsg: OK
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | cpuconsumptiontime: 35615 s
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | nevents: 400
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | neventsw: 0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | pid: 2337156
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | pgrp: 2337156
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | corecount: 4
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | event service: False
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | sizes: {0: 2392204, 4: 2392410, 11: 2392438, 9601: 2420905, 9603: 2429943, 9608: 2430057}
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | --------------------------------------------------
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | 
[2024-05-19 11:16:21] 2024-05-19 09:16:04,357 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2024-05-19 11:16:21] 2024-05-19 09:16:04,379 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,379 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,379 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,379 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,379 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,379 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,379 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,379 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,379 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | job 6205808221 has completed (purged errors)
[2024-05-19 11:16:21] 2024-05-19 09:16:04,380 | INFO     | overall cleanup function is called
[2024-05-19 11:16:21] 2024-05-19 09:16:05,387 | INFO     | --- collectZombieJob: --- 10, [2337156]
[2024-05-19 11:16:21] 2024-05-19 09:16:05,387 | INFO     | zombie collector waiting for pid 2337156
[2024-05-19 11:16:21] 2024-05-19 09:16:05,388 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 11:16:21] 2024-05-19 09:16:06,393 | INFO     | collected zombie processes
[2024-05-19 11:16:21] 2024-05-19 09:16:06,393 | INFO     | will now attempt to kill all subprocesses of pid=2337156
[2024-05-19 11:16:21] 2024-05-19 09:16:06,537 | INFO     | process IDs to be killed: [2337156] (in reverse order)
[2024-05-19 11:16:21] 2024-05-19 09:16:06,653 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 11:16:21] 2024-05-19 09:16:06,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 11:16:21] 2024-05-19 09:16:06,661 | INFO     | did not find any defunct processes belonging to 2337156
[2024-05-19 11:16:21] 2024-05-19 09:16:06,667 | INFO     | did not find any defunct processes belonging to 2337156
[2024-05-19 11:16:21] 2024-05-19 09:16:06,667 | INFO     | ready for new job
[2024-05-19 11:16:21] 2024-05-19 09:16:06,667 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 11:16:21] 2024-05-19 09:16:06,668 | INFO     | *************************************
[2024-05-19 11:16:21] 2024-05-19 09:16:06,668 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 11:16:21] 2024-05-19 09:16:06,668 | INFO     | *************************************
[2024-05-19 11:16:21] 2024-05-19 09:16:06,668 | INFO     | 
[2024-05-19 11:16:21] 2024-05-19 09:16:06,671 | INFO     | architecture information:
[2024-05-19 11:16:21] 2024-05-19 09:16:06,671 | INFO     | executing command: cat /etc/os-release
[2024-05-19 11:16:21] 2024-05-19 09:16:06,685 | INFO     | cat /etc/os-release:
[2024-05-19 11:16:21] NAME="CentOS Linux"
[2024-05-19 11:16:21] VERSION="7 (Core)"
[2024-05-19 11:16:21] ID="centos"
[2024-05-19 11:16:21] ID_LIKE="rhel fedora"
[2024-05-19 11:16:21] VERSION_ID="7"
[2024-05-19 11:16:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 11:16:21] ANSI_COLOR="0;31"
[2024-05-19 11:16:21] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 11:16:21] HOME_URL="https://www.centos.org/"
[2024-05-19 11:16:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 11:16:21] 
[2024-05-19 11:16:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 11:16:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 11:16:21] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 11:16:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 11:16:21] 
[2024-05-19 11:16:21] 2024-05-19 09:16:06,685 | INFO     | *************************************
[2024-05-19 11:16:21] 2024-05-19 09:16:06,964 | INFO     | 9626s have passed since pilot start
[2024-05-19 11:16:21] 2024-05-19 09:16:07,188 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2024-05-19 11:16:21] 2024-05-19 09:16:07,204 | INFO     | sufficient remaining disk space (571392131072 B)
[2024-05-19 11:16:21] 2024-05-19 09:16:07,204 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 11:16:21] 2024-05-19 09:16:07,205 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 11:16:21] 2024-05-19 09:16:07,205 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 11:16:21] 2024-05-19 09:16:07,205 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 11:16:21] 2024-05-19 09:16:07,205 | INFO     | aborting loop
[2024-05-19 11:16:21] 2024-05-19 09:16:07,470 | INFO     | all payload control threads have been joined
[2024-05-19 11:16:21] 2024-05-19 09:16:07,470 | INFO     | all data control threads have been joined
[2024-05-19 11:16:21] 2024-05-19 09:16:07,813 | INFO     | all job control threads have been joined
[2024-05-19 11:16:21] 2024-05-19 09:16:07,968 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 11:16:21] 2024-05-19 09:16:07,968 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 11:16:21] 2024-05-19 09:16:07,968 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 11:16:21] 2024-05-19 09:16:08,209 | INFO     | [job] retrieve thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:08,211 | INFO     | [job] job monitor thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:08,421 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:08,450 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:08,475 | INFO     | [data] control thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:08,475 | INFO     | [payload] control thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:08,545 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:08,818 | INFO     | [job] control thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:09,068 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:09,175 | INFO     | [payload] validate_post thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:09,210 | INFO     | [data] copytool_out thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:09,216 | INFO     | [data] copytool_in thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:09,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 11:16:21] 2024-05-19 09:16:09,402 | INFO     | [payload] failed_post thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:09,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 11:16:21] 2024-05-19 09:16:09,703 | INFO     | [job] validate thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:10,370 | INFO     | [job] queue monitor thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:13,444 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 11:16:21] 2024-05-19 09:16:15,539 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47162965890112)>', '<ExcThread(monitor, started 47163141342976)>']
[2024-05-19 11:16:21] 2024-05-19 09:16:16,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 11:16:21] 2024-05-19 09:16:16,004 | INFO     | [monitor] control thread has ended
[2024-05-19 11:16:21] 2024-05-19 09:16:20,564 | INFO     | all workflow threads have been joined
[2024-05-19 11:16:21] 2024-05-19 09:16:20,564 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 11:16:21] 2024-05-19 09:16:20,565 | INFO     | traces error code: 0
[2024-05-19 11:16:21] 2024-05-19 09:16:20,565 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 11:16:21] 2024-05-19 09:16:20,648 [wrapper] ==== pilot stdout END ====
[2024-05-19 11:16:21] 2024-05-19 09:16:20,651 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 11:16:21] 2024-05-19 09:16:20,653 [wrapper] pilotpid: 2330059
[2024-05-19 11:16:21] 2024-05-19 09:16:20,655 [wrapper] Pilot exit status: 0
[2024-05-19 11:16:21] 2024-05-19 09:16:20,670 [wrapper] pandaids: 6205808221
[2024-05-19 11:16:21] 2024-05-19 09:16:20,755 [wrapper] cleanup: SIGTERM to supervisor_pilot 2711259 2330060
[2024-05-19 11:16:21] 2024-05-19 09:16:20,758 [wrapper] Test setup, not cleaning
[2024-05-19 11:16:21] 2024-05-19 09:16:20,760 [wrapper] ==== wrapper stdout END ====
[2024-05-19 11:16:21] 2024-05-19 09:16:20,762 [wrapper] ==== wrapper stderr END ====
[2024-05-19 11:16:21] 2024-05-19 09:16:20,766 [wrapper] apfmon messages muted
[2024-05-19 11:16:21]  *** Error codes and diagnostics ***
[2024-05-19 11:16:21]     "exeErrorCode": 0,
[2024-05-19 11:16:21]     "exeErrorDiag": "",
[2024-05-19 11:16:21]     "pilotErrorCode": 0,
[2024-05-19 11:16:21]     "pilotErrorDiag": "",
[2024-05-19 11:16:21]  *** Listing of results directory ***
[2024-05-19 11:16:21] total 835912
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc    467845 May 13 08:13 pilot3.tar.gz
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc      5633 May 13 08:47 queuedata.json
[2024-05-19 11:16:21] -rwx------ 1 boinc boinc     32251 May 13 08:47 runpilot2-wrapper.sh
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc       100 May 19 08:35 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 11:16:21] -rwxr-xr-x 1 boinc boinc      7986 May 19 08:35 run_atlas
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc       105 May 19 08:35 job.xml
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc      6663 May 19 08:35 init_data.xml
[2024-05-19 11:16:21] -rw-r--r-- 2 boinc boinc 599612111 May 19 08:35 EVNT.38776119._000043.pool.root.1
[2024-05-19 11:16:21] -rw-r--r-- 2 boinc boinc     17537 May 19 08:35 start_atlas.sh
[2024-05-19 11:16:21] drwxrwx--x 2 boinc boinc      4096 May 19 08:35 shared
[2024-05-19 11:16:21] -rw-r--r-- 2 boinc boinc    480005 May 19 08:35 input.tar.gz
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc         0 May 19 08:35 boinc_lockfile
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc      2633 May 19 08:35 pandaJob.out
[2024-05-19 11:16:21] -rw------- 1 boinc boinc       424 May 19 08:35 setup.sh.local
[2024-05-19 11:16:21] -rw------- 1 boinc boinc   1013987 May 19 08:35 agis_schedconf.cvmfs.json
[2024-05-19 11:16:21] -rw------- 1 boinc boinc         0 May 19 08:35 agis_ddmendpoints.agis.ALL.json
[2024-05-19 11:16:21] -rw------- 1 boinc boinc   1324701 May 19 08:35 cric_ddmendpoints.json
[2024-05-19 11:16:21] drwx------ 4 boinc boinc      4096 May 19 08:35 pilot3
[2024-05-19 11:16:21] -rw------- 1 boinc boinc 250248713 May 19 11:15 HITS.38776125._002141.pool.root.1
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc       531 May 19 11:15 boinc_task_state.xml
[2024-05-19 11:16:21] -rw------- 1 boinc boinc      1060 May 19 11:15 memory_monitor_summary.json
[2024-05-19 11:16:21] -rw------- 1 boinc boinc    284670 May 19 11:15 log.38776125._002141.job.log.tgz.1
[2024-05-19 11:16:21] -rw------- 1 boinc boinc      7757 May 19 11:16 heartbeat.json
[2024-05-19 11:16:21] -rw------- 1 boinc boinc        95 May 19 11:16 pilot_heartbeat.json
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc        27 May 19 11:16 wrapper_checkpoint.txt
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc      8192 May 19 11:16 boinc_mmap_file
[2024-05-19 11:16:21] -rw------- 1 boinc boinc      4294 May 19 11:16 pilotlog.txt
[2024-05-19 11:16:21] -rw------- 1 boinc boinc   1008190 May 19 11:16 log.38776125._002141.job.log.1
[2024-05-19 11:16:21] -rw------- 1 boinc boinc       357 May 19 11:16 output.list
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc       620 May 19 11:16 runtime_log
[2024-05-19 11:16:21] -rw------- 1 boinc boinc   1310720 May 19 11:16 result.tar.gz
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc     11409 May 19 11:16 runtime_log.err
[2024-05-19 11:16:21] -rw------- 1 boinc boinc       655 May 19 11:16 clELDmheeQ5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmbMGKDmy0vONo.diag
[2024-05-19 11:16:21] -rw-r--r-- 1 boinc boinc     21258 May 19 11:16 stderr.txt
[2024-05-19 11:16:21] HITS file was successfully produced:
[2024-05-19 11:16:21] -rw------- 1 boinc boinc 250248713 May 19 11:15 shared/HITS.pool.root.1
[2024-05-19 11:16:21]  *** Contents of shared directory: ***
[2024-05-19 11:16:21] total 831724
[2024-05-19 11:16:21] -rw-r--r-- 2 boinc boinc 599612111 May 19 08:35 ATLAS.root_0
[2024-05-19 11:16:21] -rw-r--r-- 2 boinc boinc     17537 May 19 08:35 start_atlas.sh
[2024-05-19 11:16:21] -rw-r--r-- 2 boinc boinc    480005 May 19 08:35 input.tar.gz
[2024-05-19 11:16:21] -rw------- 1 boinc boinc 250248713 May 19 11:15 HITS.pool.root.1
[2024-05-19 11:16:21] -rw------- 1 boinc boinc   1310720 May 19 11:16 result.tar.gz
11:16:23 (2325681): run_atlas exited; CPU time 35360.428752
11:16:23 (2325681): called boinc_finish(0)

</stderr_txt>
]]>

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