Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:47:10 (3649771): wrapper (7.7.26015): starting
15:47:10 (3649771): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 15:47:10] Arguments: --nthreads 4
[2024-05-15 15:47:10] Threads: 4
[2024-05-15 15:47:10] Checking for CVMFS
[2024-05-15 15:47:10] No cvmfs_config command found, will try listing directly
[2024-05-15 15:47:10] CVMFS is ok
[2024-05-15 15:47:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 15:47:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 15:47:10] Further information can be found at the LHC@home message board.
[2024-05-15 15:47:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 15:47:10] Checking for apptainer binary...
[2024-05-15 15:47:10] which: no apptainer in ((null))
[2024-05-15 15:47:10] apptainer is not installed, using version from CVMFS
[2024-05-15 15:47:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 15:47:11] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2024-05-15 15:47:11] apptainer works
[2024-05-15 15:47:11] Set ATHENA_PROC_NUMBER=4
[2024-05-15 15:47:11] Set ATHENA_CORE_NUMBER=4
[2024-05-15 15:47:11] Starting ATLAS job with PandaID=6205725389
[2024-05-15 15:47:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 19:51:56]  *** The last 200 lines of the pilot log: ***
[2024-05-15 19:51:56] 2024-05-15 17:51:41,793 | INFO     | intersect: 3587923490.4115233
[2024-05-15 19:51:56] 2024-05-15 17:51:41,793 | INFO     | chi2: 0.155661397207487
[2024-05-15 19:51:56] 2024-05-15 17:51:41,793 | INFO     | current chi2=0.155661397207487 (change=87.60656301103667 %)
[2024-05-15 19:51:56] 2024-05-15 17:51:41,794 | INFO     | model: linear, x: [1715781780.0, 1715781841.0, 1715781902.0, 1715781963.0, 1715782024.0, 1715782085.0, 1715782146.0, 1715782207.0, 1715782268.0, 1715782329.0, 1715
[2024-05-15 19:51:56] 2024-05-15 17:51:41,794 | INFO     | sum of square deviations: 3531973200.0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,795 | INFO     | sum of deviations: -9612878613.999996
[2024-05-15 19:51:56] 2024-05-15 17:51:41,795 | INFO     | mean x: 1715788612.0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,795 | INFO     | mean y: 2362279.6666666665
[2024-05-15 19:51:56] 2024-05-15 17:51:41,795 | INFO     | -- intersect: 4672179042.273908
[2024-05-15 19:51:56] 2024-05-15 17:51:41,795 | INFO     | intersect: 4672179042.273908
[2024-05-15 19:51:56] 2024-05-15 17:51:41,795 | INFO     | chi2: 0.11313030416114468
[2024-05-15 19:51:56] 2024-05-15 17:51:41,795 | INFO     | current chi2=0.11313030416114468 (change=27.322826217248338 %)
[2024-05-15 19:51:56] 2024-05-15 17:51:41,795 | INFO     | model: linear, x: [1715782085.0, 1715782146.0, 1715782207.0, 1715782268.0, 1715782329.0, 1715782390.0, 1715782451.0, 1715782512.0, 1715782573.0, 1715782634.0, 1715
[2024-05-15 19:51:56] 2024-05-15 17:51:41,796 | INFO     | sum of square deviations: 3301699115.0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,796 | INFO     | sum of deviations: -1995637813.9999979
[2024-05-15 19:51:56] 2024-05-15 17:51:41,797 | INFO     | mean x: 1715788764.5
[2024-05-15 19:51:56] 2024-05-15 17:51:41,797 | INFO     | mean y: 2357232.672727273
[2024-05-15 19:51:56] 2024-05-15 17:51:41,797 | INFO     | -- intersect: 1039427183.6311558
[2024-05-15 19:51:56] 2024-05-15 17:51:41,797 | INFO     | intersect: 1039427183.6311558
[2024-05-15 19:51:56] 2024-05-15 17:51:41,797 | INFO     | chi2: 0.07401179469465798
[2024-05-15 19:51:56] 2024-05-15 17:51:41,797 | INFO     | current chi2=0.07401179469465798 (change=34.57827657810029 %)
[2024-05-15 19:51:56] 2024-05-15 17:51:41,797 | INFO     | model: linear, x: [1715782390.0, 1715782451.0, 1715782512.0, 1715782573.0, 1715782634.0, 1715782695.0, 1715782756.0, 1715782817.0, 1715782878.0, 1715782939.0, 1715
[2024-05-15 19:51:56] 2024-05-15 17:51:41,797 | INFO     | sum of square deviations: 3081657780.0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,798 | INFO     | sum of deviations: 6336026690.0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,798 | INFO     | mean x: 1715788917.0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,798 | INFO     | mean y: 2351456.6372093023
[2024-05-15 19:51:56] 2024-05-15 17:51:41,798 | INFO     | -- intersect: -3525387555.485738
[2024-05-15 19:51:56] 2024-05-15 17:51:41,799 | INFO     | intersect: -3525387555.485738
[2024-05-15 19:51:56] 2024-05-15 17:51:41,799 | INFO     | chi2: 0.015561818390209653
[2024-05-15 19:51:56] 2024-05-15 17:51:41,799 | INFO     | current chi2=0.015561818390209653 (change=78.9738669972654 %)
[2024-05-15 19:51:56] 2024-05-15 17:51:41,799 | INFO     | model: linear, x: [1715782695.0, 1715782756.0, 1715782817.0, 1715782878.0, 1715782939.0, 1715783000.0, 1715783061.0, 1715783122.0, 1715783183.0, 1715783244.0, 1715
[2024-05-15 19:51:56] 2024-05-15 17:51:41,799 | INFO     | sum of square deviations: 2871616632.5
[2024-05-15 19:51:56] 2024-05-15 17:51:41,800 | INFO     | sum of deviations: 7425177358.999999
[2024-05-15 19:51:56] 2024-05-15 17:51:41,800 | INFO     | mean x: 1715789069.5
[2024-05-15 19:51:56] 2024-05-15 17:51:41,800 | INFO     | mean y: 2350691.980952381
[2024-05-15 19:51:56] 2024-05-15 17:51:41,800 | INFO     | -- intersect: -4434187948.826309
[2024-05-15 19:51:56] 2024-05-15 17:51:41,800 | INFO     | intersect: -4434187948.826309
[2024-05-15 19:51:56] 2024-05-15 17:51:41,800 | INFO     | chi2: 0.0008505033470307042
[2024-05-15 19:51:56] 2024-05-15 17:51:41,800 | INFO     | current chi2=0.0008505033470307042 (change=94.53467888067773 %)
[2024-05-15 19:51:56] 2024-05-15 17:51:41,801 | INFO     | model: linear, x: [1715783000.0, 1715783061.0, 1715783122.0, 1715783183.0, 1715783244.0, 1715783305.0, 1715783366.0, 1715783427.0, 1715783488.0, 1715783549.0, 1715
[2024-05-15 19:51:56] 2024-05-15 17:51:41,801 | INFO     | sum of square deviations: 2671343110.0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,801 | INFO     | sum of deviations: 6622786775.0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,802 | INFO     | mean x: 1715789222.0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,802 | INFO     | mean y: 2351302.9414634146
[2024-05-15 19:51:56] 2024-05-15 17:51:41,802 | INFO     | -- intersect: -4251428799.5138664
[2024-05-15 19:51:56] 2024-05-15 17:51:41,802 | INFO     | intersect: -4251428799.5138664
[2024-05-15 19:51:56] 2024-05-15 17:51:41,802 | INFO     | chi2: 0.0007710895548693018
[2024-05-15 19:51:56] 2024-05-15 17:51:41,802 | INFO     | current chi2=0.0007710895548693018 (change=9.337269798955344 %)
[2024-05-15 19:51:56] 2024-05-15 17:51:41,802 | INFO     | left removable region: 70
[2024-05-15 19:51:56] 2024-05-15 17:51:41,802 | INFO     | model: linear, x: [1715785135.0, 1715785196.0, 1715785257.0, 1715785318.0, 1715785379.0, 1715785440.0, 1715785501.0, 1715785562.0, 1715785623.0, 1715785684.0, 1715
[2024-05-15 19:51:56] 2024-05-15 17:51:41,802 | INFO     | sum of square deviations: 1367709365.0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,803 | INFO     | sum of deviations: 2670050916.4999995
[2024-05-15 19:51:56] 2024-05-15 17:51:41,803 | INFO     | mean x: 1715790106.5
[2024-05-15 19:51:56] 2024-05-15 17:51:41,803 | INFO     | mean y: 2354510.176829268
[2024-05-15 19:51:56] 2024-05-15 17:51:41,803 | INFO     | -- intersect: -3347221842.5316696
[2024-05-15 19:51:56] 2024-05-15 17:51:41,803 | INFO     | intersect: -3347221842.5316696
[2024-05-15 19:51:56] 2024-05-15 17:51:41,803 | INFO     | chi2: 0.000277804608300475
[2024-05-15 19:51:56] 2024-05-15 17:51:41,803 | INFO     | -- intersect: -3347221842.5316696
[2024-05-15 19:51:56] 2024-05-15 17:51:41,804 | INFO     | current memory leak: 1.95 B/s (using 164 data points, chi2=0.00)
[2024-05-15 19:51:56] 2024-05-15 17:51:41,804 | INFO     | ..............................
[2024-05-15 19:51:56] 2024-05-15 17:51:41,804 | INFO     | . Timing measurements:
[2024-05-15 19:51:56] 2024-05-15 17:51:41,804 | INFO     | . get job = 0 s
[2024-05-15 19:51:56] 2024-05-15 17:51:41,804 | INFO     | . initial setup = 1 s
[2024-05-15 19:51:56] 2024-05-15 17:51:41,804 | INFO     | . payload setup = 5 s
[2024-05-15 19:51:56] 2024-05-15 17:51:41,804 | INFO     | . stage-in = 0 s
[2024-05-15 19:51:56] 2024-05-15 17:51:41,804 | INFO     | . payload execution = 14629 s
[2024-05-15 19:51:56] 2024-05-15 17:51:41,804 | INFO     | . stage-out = 0 s
[2024-05-15 19:51:56] 2024-05-15 17:51:41,804 | INFO     | . log creation = 0 s
[2024-05-15 19:51:56] 2024-05-15 17:51:41,804 | INFO     | ..............................
[2024-05-15 19:51:56] 2024-05-15 17:51:41,861 | INFO     | 
[2024-05-15 19:51:56] 2024-05-15 17:51:41,861 | INFO     | job summary report
[2024-05-15 19:51:56] 2024-05-15 17:51:41,861 | INFO     | --------------------------------------------------
[2024-05-15 19:51:56] 2024-05-15 17:51:41,861 | INFO     | PanDA job id: 6205725389
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | task id: 38776125
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | errors: (none)
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | pilot state: finished 
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | transexitcode: 0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | exeerrorcode: 0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | exeerrordiag: 
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | exitcode: 0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | exitmsg: OK
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | cpuconsumptiontime: 55543 s
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | nevents: 400
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | neventsw: 0
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | pid: 3660876
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | pgrp: 3660876
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | corecount: 4
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | event service: False
[2024-05-15 19:51:56] 2024-05-15 17:51:41,862 | INFO     | sizes: {0: 2396652, 3: 2396858, 11: 2396886, 14638: 2427756, 14639: 2427755, 14641: 2436977, 14647: 2437091}
[2024-05-15 19:51:56] 2024-05-15 17:51:41,863 | INFO     | --------------------------------------------------
[2024-05-15 19:51:56] 2024-05-15 17:51:41,863 | INFO     | 
[2024-05-15 19:51:56] 2024-05-15 17:51:41,863 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/1
[2024-05-15 19:51:56] 2024-05-15 17:51:41,877 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,877 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,877 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,877 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,877 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,878 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 19:51:56] 2024-05-15 17:51:41,879 | INFO     | job 6205725389 has completed (purged errors)
[2024-05-15 19:51:56] 2024-05-15 17:51:41,879 | INFO     | overall cleanup function is called
[2024-05-15 19:51:56] 2024-05-15 17:51:42,886 | INFO     | --- collectZombieJob: --- 10, [3660876]
[2024-05-15 19:51:56] 2024-05-15 17:51:42,886 | INFO     | zombie collector waiting for pid 3660876
[2024-05-15 19:51:56] 2024-05-15 17:51:42,886 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 19:51:56] 2024-05-15 17:51:43,890 | INFO     | collected zombie processes
[2024-05-15 19:51:56] 2024-05-15 17:51:43,891 | INFO     | will now attempt to kill all subprocesses of pid=3660876
[2024-05-15 19:51:56] 2024-05-15 17:51:43,984 | INFO     | process IDs to be killed: [3660876] (in reverse order)
[2024-05-15 19:51:56] 2024-05-15 17:51:44,055 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 19:51:56] 2024-05-15 17:51:44,055 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 19:51:56] 2024-05-15 17:51:44,059 | INFO     | did not find any defunct processes belonging to 3660876
[2024-05-15 19:51:56] 2024-05-15 17:51:44,062 | INFO     | did not find any defunct processes belonging to 3660876
[2024-05-15 19:51:56] 2024-05-15 17:51:44,062 | INFO     | ready for new job
[2024-05-15 19:51:56] 2024-05-15 17:51:44,063 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 19:51:56] 2024-05-15 17:51:44,064 | INFO     | *************************************
[2024-05-15 19:51:56] 2024-05-15 17:51:44,064 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 19:51:56] 2024-05-15 17:51:44,064 | INFO     | *************************************
[2024-05-15 19:51:56] 2024-05-15 17:51:44,064 | INFO     | 
[2024-05-15 19:51:56] 2024-05-15 17:51:44,066 | INFO     | architecture information:
[2024-05-15 19:51:56] 2024-05-15 17:51:44,066 | INFO     | executing command: cat /etc/os-release
[2024-05-15 19:51:56] 2024-05-15 17:51:44,078 | INFO     | cat /etc/os-release:
[2024-05-15 19:51:56] NAME="CentOS Linux"
[2024-05-15 19:51:56] VERSION="7 (Core)"
[2024-05-15 19:51:56] ID="centos"
[2024-05-15 19:51:56] ID_LIKE="rhel fedora"
[2024-05-15 19:51:56] VERSION_ID="7"
[2024-05-15 19:51:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 19:51:56] ANSI_COLOR="0;31"
[2024-05-15 19:51:56] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 19:51:56] HOME_URL="https://www.centos.org/"
[2024-05-15 19:51:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 19:51:56] 
[2024-05-15 19:51:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 19:51:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 19:51:56] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 19:51:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 19:51:56] 
[2024-05-15 19:51:56] 2024-05-15 17:51:44,078 | INFO     | *************************************
[2024-05-15 19:51:56] 2024-05-15 17:51:44,581 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/1
[2024-05-15 19:51:56] 2024-05-15 17:51:44,598 | INFO     | sufficient remaining disk space (1620669628416 B)
[2024-05-15 19:51:56] 2024-05-15 17:51:44,598 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 19:51:56] 2024-05-15 17:51:44,599 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 19:51:56] 2024-05-15 17:51:44,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 19:51:56] 2024-05-15 17:51:44,599 | INFO     | aborting loop
[2024-05-15 19:51:56] 2024-05-15 17:51:44,599 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-15 19:51:56] 2024-05-15 17:51:44,600 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 19:51:56] 2024-05-15 17:51:44,600 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 19:51:56] 2024-05-15 17:51:44,600 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 19:51:56] 2024-05-15 17:51:44,992 | INFO     | all payload control threads have been joined
[2024-05-15 19:51:56] 2024-05-15 17:51:45,096 | INFO     | all data control threads have been joined
[2024-05-15 19:51:56] 2024-05-15 17:51:45,401 | INFO     | all job control threads have been joined
[2024-05-15 19:51:56] 2024-05-15 17:51:45,604 | INFO     | [job] retrieve thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:45,604 | INFO     | [job] job monitor thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:45,661 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:45,676 | INFO     | [payload] validate_post thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:45,696 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:45,746 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 19:51:56] 2024-05-15 17:51:45,809 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:45,993 | INFO     | [payload] control thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:46,006 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:46,101 | INFO     | [data] control thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:46,163 | INFO     | [data] copytool_in thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:46,406 | INFO     | [job] control thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:46,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 19:51:56] 2024-05-15 17:51:46,868 | INFO     | [payload] failed_post thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:46,871 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 19:51:56] 2024-05-15 17:51:46,903 | INFO     | [job] validate thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:47,752 | INFO     | [data] copytool_out thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:47,876 | INFO     | [job] queue monitor thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:50,608 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 19:51:56] 2024-05-15 17:51:50,945 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47061977314368)>', '<ExcThread(monitor, started 47062150665984)>']
[2024-05-15 19:51:56] 2024-05-15 17:51:51,632 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 19:51:56] 2024-05-15 17:51:51,633 | INFO     | [monitor] control thread has ended
[2024-05-15 19:51:56] 2024-05-15 17:51:55,970 | INFO     | all workflow threads have been joined
[2024-05-15 19:51:56] 2024-05-15 17:51:55,971 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 19:51:56] 2024-05-15 17:51:55,971 | INFO     | traces error code: 0
[2024-05-15 19:51:56] 2024-05-15 17:51:55,971 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 19:51:56] 2024-05-15 17:51:56,047 [wrapper] ==== pilot stdout END ====
[2024-05-15 19:51:56] 2024-05-15 17:51:56,049 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 19:51:56] 2024-05-15 17:51:56,051 [wrapper] pilotpid: 3654037
[2024-05-15 19:51:56] 2024-05-15 17:51:56,053 [wrapper] Pilot exit status: 0
[2024-05-15 19:51:56] 2024-05-15 17:51:56,068 [wrapper] pandaids: 6205725389
[2024-05-15 19:51:56] 2024-05-15 17:51:56,130 [wrapper] cleanup: SIGTERM to supervisor_pilot 4104205 3654038
[2024-05-15 19:51:56] 2024-05-15 17:51:56,132 [wrapper] Test setup, not cleaning
[2024-05-15 19:51:56] 2024-05-15 17:51:56,134 [wrapper] ==== wrapper stdout END ====
[2024-05-15 19:51:56] 2024-05-15 17:51:56,135 [wrapper] ==== wrapper stderr END ====
[2024-05-15 19:51:56] 2024-05-15 17:51:56,139 [wrapper] apfmon messages muted
[2024-05-15 19:51:56]  *** Error codes and diagnostics ***
[2024-05-15 19:51:56]     "exeErrorCode": 0,
[2024-05-15 19:51:56]     "exeErrorDiag": "",
[2024-05-15 19:51:56]     "pilotErrorCode": 0,
[2024-05-15 19:51:56]     "pilotErrorDiag": "",
[2024-05-15 19:51:56]  *** Listing of results directory ***
[2024-05-15 19:51:56] total 832568
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc    467845 May 13 07:47 pilot3.tar.gz
[2024-05-15 19:51:56] -rwx------ 1 boinc boinc     32251 May 13 07:51 runpilot2-wrapper.sh
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc      5633 May 13 07:54 queuedata.json
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc       100 May 15 15:47 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 19:51:56] -rwxr-xr-x 1 boinc boinc      7986 May 15 15:47 run_atlas
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc       105 May 15 15:47 job.xml
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc      6457 May 15 15:47 init_data.xml
[2024-05-15 19:51:56] -rw-r--r-- 2 boinc boinc 599658488 May 15 15:47 EVNT.38776119._000107.pool.root.1
[2024-05-15 19:51:56] -rw-r--r-- 2 boinc boinc     17537 May 15 15:47 start_atlas.sh
[2024-05-15 19:51:56] drwxrwx--x 2 boinc boinc      4096 May 15 15:47 shared
[2024-05-15 19:51:56] -rw-r--r-- 2 boinc boinc    480009 May 15 15:47 input.tar.gz
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc         0 May 15 15:47 boinc_lockfile
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc      2633 May 15 15:47 pandaJob.out
[2024-05-15 19:51:56] -rw------- 1 boinc boinc       424 May 15 15:47 setup.sh.local
[2024-05-15 19:51:56] -rw------- 1 boinc boinc   1010550 May 15 15:47 agis_schedconf.cvmfs.json
[2024-05-15 19:51:56] -rw------- 1 boinc boinc   1325758 May 15 15:47 cric_ddmendpoints.json
[2024-05-15 19:51:56] drwx------ 4 boinc boinc      4096 May 15 15:47 pilot3
[2024-05-15 19:51:56] -rw------- 1 boinc boinc        95 May 15 19:50 pilot_heartbeat.json
[2024-05-15 19:51:56] -rw------- 1 boinc boinc 245267232 May 15 19:50 HITS.38776125._001650.pool.root.1
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc       532 May 15 19:51 boinc_task_state.xml
[2024-05-15 19:51:56] -rw------- 1 boinc boinc      1051 May 15 19:51 memory_monitor_summary.json
[2024-05-15 19:51:56] -rw------- 1 boinc boinc         0 May 15 19:51 agis_ddmendpoints.agis.ALL.json
[2024-05-15 19:51:56] -rw------- 1 boinc boinc    365512 May 15 19:51 log.38776125._001650.job.log.tgz.1
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc      8192 May 15 19:51 boinc_mmap_file
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc        28 May 15 19:51 wrapper_checkpoint.txt
[2024-05-15 19:51:56] -rw------- 1 boinc boinc      7766 May 15 19:51 heartbeat.json
[2024-05-15 19:51:56] -rw------- 1 boinc boinc      4345 May 15 19:51 pilotlog.txt
[2024-05-15 19:51:56] -rw------- 1 boinc boinc   1686436 May 15 19:51 log.38776125._001650.job.log.1
[2024-05-15 19:51:56] -rw------- 1 boinc boinc       357 May 15 19:51 output.list
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc       620 May 15 19:51 runtime_log
[2024-05-15 19:51:56] -rw------- 1 boinc boinc   2068480 May 15 19:51 result.tar.gz
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc     11410 May 15 19:51 runtime_log.err
[2024-05-15 19:51:56] -rw------- 1 boinc boinc       658 May 15 19:51 NgMODmcldQ5n7Olcko1bjSoqABFKDmABFKDmOtvXDm3lWKDmn9PWCn.diag
[2024-05-15 19:51:56] -rw-r--r-- 1 boinc boinc     21395 May 15 19:51 stderr.txt
[2024-05-15 19:51:56] HITS file was successfully produced:
[2024-05-15 19:51:56] -rw------- 1 boinc boinc 245267232 May 15 19:50 shared/HITS.pool.root.1
[2024-05-15 19:51:56]  *** Contents of shared directory: ***
[2024-05-15 19:51:56] total 827644
[2024-05-15 19:51:56] -rw-r--r-- 2 boinc boinc 599658488 May 15 15:47 ATLAS.root_0
[2024-05-15 19:51:56] -rw-r--r-- 2 boinc boinc     17537 May 15 15:47 start_atlas.sh
[2024-05-15 19:51:56] -rw-r--r-- 2 boinc boinc    480009 May 15 15:47 input.tar.gz
[2024-05-15 19:51:56] -rw------- 1 boinc boinc 245267232 May 15 19:50 HITS.pool.root.1
[2024-05-15 19:51:56] -rw------- 1 boinc boinc   2068480 May 15 19:51 result.tar.gz
19:51:58 (3649771): run_atlas exited; CPU time 55267.161514
19:51:58 (3649771): called boinc_finish(0)

</stderr_txt>
]]>

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