Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:50:59 (375425): wrapper (7.7.26015): starting
22:50:59 (375425): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 22:50:59] Arguments: --nthreads 4
[2024-05-19 22:50:59] Threads: 4
[2024-05-19 22:50:59] Checking for CVMFS
[2024-05-19 22:50:59] No cvmfs_config command found, will try listing directly
[2024-05-19 22:50:59] CVMFS is ok
[2024-05-19 22:50:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 22:50:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 22:50:59] Further information can be found at the LHC@home message board.
[2024-05-19 22:50:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 22:50:59] Checking for apptainer binary...
[2024-05-19 22:50:59] which: no apptainer in ((null))
[2024-05-19 22:50:59] apptainer is not installed, using version from CVMFS
[2024-05-19 22:50:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 22:51:00] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2024-05-19 22:51:00] apptainer works
[2024-05-19 22:51:00] Set ATHENA_PROC_NUMBER=4
[2024-05-19 22:51:00] Set ATHENA_CORE_NUMBER=4
[2024-05-19 22:51:00] Starting ATLAS job with PandaID=6205724707
[2024-05-19 22:51:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 01:24:12]  *** The last 200 lines of the pilot log: ***
[2024-05-20 01:24:12] 2024-05-19 23:23:54,858 | INFO     | current chi2=0.00041925250112010185 (change=29.582648125495492 %)
[2024-05-20 01:24:12] 2024-05-19 23:23:54,858 | INFO     | model: linear, x: [1716153722.0, 1716153783.0, 1716153844.0, 1716153905.0, 1716153966.0, 1716154027.0, 1716154088.0, 1716154149.0, 1716154210.0, 1716154271.0, 1716
[2024-05-20 01:24:12] 2024-05-19 23:23:54,858 | INFO     | sum of square deviations: 535786790.0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,859 | INFO     | sum of deviations: 1045848690.5
[2024-05-20 01:24:12] 2024-05-19 23:23:54,859 | INFO     | mean x: 1716157351.5
[2024-05-20 01:24:12] 2024-05-19 23:23:54,859 | INFO     | mean y: 2348582.125
[2024-05-20 01:24:12] 2024-05-19 23:23:54,859 | INFO     | -- intersect: -3347567750.747304
[2024-05-20 01:24:12] 2024-05-19 23:23:54,859 | INFO     | intersect: -3347567750.747304
[2024-05-20 01:24:12] 2024-05-19 23:23:54,859 | INFO     | chi2: 0.0002974754400455913
[2024-05-20 01:24:12] 2024-05-19 23:23:54,859 | INFO     | current chi2=0.0002974754400455913 (change=29.046233653744025 %)
[2024-05-20 01:24:12] 2024-05-19 23:23:54,859 | INFO     | model: linear, x: [1716154027.0, 1716154088.0, 1716154149.0, 1716154210.0, 1716154271.0, 1716154332.0, 1716154393.0, 1716154454.0, 1716154515.0, 1716154576.0, 1716
[2024-05-20 01:24:12] 2024-05-19 23:23:54,859 | INFO     | sum of square deviations: 471562330.0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,860 | INFO     | sum of deviations: 713421291.0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,860 | INFO     | mean x: 1716157504.0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,860 | INFO     | mean y: 2349371.5217391304
[2024-05-20 01:24:12] 2024-05-19 23:23:54,860 | INFO     | -- intersect: -2594005816.6948805
[2024-05-20 01:24:12] 2024-05-19 23:23:54,860 | INFO     | intersect: -2594005816.6948805
[2024-05-20 01:24:12] 2024-05-19 23:23:54,860 | INFO     | chi2: 0.00015918450409578596
[2024-05-20 01:24:12] 2024-05-19 23:23:54,860 | INFO     | current chi2=0.00015918450409578596 (change=46.48818602591554 %)
[2024-05-20 01:24:12] 2024-05-19 23:23:54,860 | INFO     | model: linear, x: [1716154332.0, 1716154393.0, 1716154454.0, 1716154515.0, 1716154576.0, 1716154637.0, 1716154698.0, 1716154759.0, 1716154820.0, 1716154881.0, 1716
[2024-05-20 01:24:12] 2024-05-19 23:23:54,860 | INFO     | sum of square deviations: 412686807.5
[2024-05-20 01:24:12] 2024-05-19 23:23:54,860 | INFO     | sum of deviations: 490713432.5000002
[2024-05-20 01:24:12] 2024-05-19 23:23:54,860 | INFO     | mean x: 1716157656.5
[2024-05-20 01:24:12] 2024-05-19 23:23:54,861 | INFO     | mean y: 2349946.3545454545
[2024-05-20 01:24:12] 2024-05-19 23:23:54,861 | INFO     | -- intersect: -2038281348.4373806
[2024-05-20 01:24:12] 2024-05-19 23:23:54,861 | INFO     | intersect: -2038281348.4373806
[2024-05-20 01:24:12] 2024-05-19 23:23:54,861 | INFO     | chi2: 8.995230655020919e-05
[2024-05-20 01:24:12] 2024-05-19 23:23:54,861 | INFO     | current chi2=8.995230655020919e-05 (change=43.491794593221044 %)
[2024-05-20 01:24:12] 2024-05-19 23:23:54,861 | INFO     | model: linear, x: [1716154637.0, 1716154698.0, 1716154759.0, 1716154820.0, 1716154881.0, 1716154942.0, 1716155003.0, 1716155064.0, 1716155125.0, 1716155186.0, 1716
[2024-05-20 01:24:12] 2024-05-19 23:23:54,861 | INFO     | sum of square deviations: 358927660.0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,861 | INFO     | sum of deviations: 309255543.0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,861 | INFO     | mean x: 1716157809.0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,861 | INFO     | mean y: 2350461.4095238093
[2024-05-20 01:24:12] 2024-05-19 23:23:54,861 | INFO     | -- intersect: -1476307703.5699747
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | intersect: -1476307703.5699747
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | chi2: 3.624717339844244e-05
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | current chi2=3.624717339844244e-05 (change=59.704008948108346 %)
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | model: linear, x: [1716154942.0, 1716155003.0, 1716155064.0, 1716155125.0, 1716155186.0, 1716155247.0, 1716155308.0, 1716155369.0, 1716155430.0, 1716155491.0, 1716
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | sum of square deviations: 310052325.0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | sum of deviations: 205897417.5
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | mean x: 1716157961.5
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | mean y: 2350781.79
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | -- intersect: -1137303604.916871
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | intersect: -1137303604.916871
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | chi2: 1.521560359300936e-05
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | current chi2=1.521560359300936e-05 (change=58.022647929664 %)
[2024-05-20 01:24:12] 2024-05-19 23:23:54,862 | INFO     | left removable region not found
[2024-05-20 01:24:12] 2024-05-19 23:23:54,863 | INFO     | model: linear, x: [1716151892.0, 1716151953.0, 1716152014.0, 1716152075.0, 1716152136.0, 1716152197.0, 1716152258.0, 1716152319.0, 1716152380.0, 1716152441.0, 1716
[2024-05-20 01:24:12] 2024-05-19 23:23:54,863 | INFO     | sum of square deviations: 925859220.0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,863 | INFO     | sum of deviations: 62653052603.000015
[2024-05-20 01:24:12] 2024-05-19 23:23:54,863 | INFO     | mean x: 1716156253.5
[2024-05-20 01:24:12] 2024-05-19 23:23:54,863 | INFO     | mean y: 2243558.888888889
[2024-05-20 01:24:12] 2024-05-19 23:23:54,863 | INFO     | -- intersect: -116130345179.06516
[2024-05-20 01:24:12] 2024-05-19 23:23:54,863 | INFO     | intersect: -116130345179.06516
[2024-05-20 01:24:12] 2024-05-19 23:23:54,863 | INFO     | chi2: 3.9869665000677346
[2024-05-20 01:24:12] 2024-05-19 23:23:54,863 | INFO     | -- intersect: -116130345179.06516
[2024-05-20 01:24:12] 2024-05-19 23:23:54,864 | INFO     | current memory leak: 67.67 B/s (using 144 data points, chi2=3.99)
[2024-05-20 01:24:12] 2024-05-19 23:23:54,864 | INFO     | ..............................
[2024-05-20 01:24:12] 2024-05-19 23:23:54,864 | INFO     | . Timing measurements:
[2024-05-20 01:24:12] 2024-05-19 23:23:54,864 | INFO     | . get job = 0 s
[2024-05-20 01:24:12] 2024-05-19 23:23:54,864 | INFO     | . initial setup = 1 s
[2024-05-20 01:24:12] 2024-05-19 23:23:54,864 | INFO     | . payload setup = 4 s
[2024-05-20 01:24:12] 2024-05-19 23:23:54,864 | INFO     | . stage-in = 0 s
[2024-05-20 01:24:12] 2024-05-19 23:23:54,864 | INFO     | . payload execution = 9138 s
[2024-05-20 01:24:12] 2024-05-19 23:23:54,864 | INFO     | . stage-out = 0 s
[2024-05-20 01:24:12] 2024-05-19 23:23:54,864 | INFO     | . log creation = 0 s
[2024-05-20 01:24:12] 2024-05-19 23:23:54,864 | INFO     | ..............................
[2024-05-20 01:24:12] 2024-05-19 23:23:54,918 | INFO     | 
[2024-05-20 01:24:12] 2024-05-19 23:23:54,918 | INFO     | job summary report
[2024-05-20 01:24:12] 2024-05-19 23:23:54,918 | INFO     | --------------------------------------------------
[2024-05-20 01:24:12] 2024-05-19 23:23:54,918 | INFO     | PanDA job id: 6205724707
[2024-05-20 01:24:12] 2024-05-19 23:23:54,918 | INFO     | task id: 38776125
[2024-05-20 01:24:12] 2024-05-19 23:23:54,918 | INFO     | errors: (none)
[2024-05-20 01:24:12] 2024-05-19 23:23:54,918 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-20 01:24:12] 2024-05-19 23:23:54,918 | INFO     | pilot state: finished 
[2024-05-20 01:24:12] 2024-05-19 23:23:54,918 | INFO     | transexitcode: 0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | exeerrorcode: 0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | exeerrordiag: 
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | exitcode: 0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | exitmsg: OK
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | cpuconsumptiontime: 33933 s
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | nevents: 400
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | neventsw: 0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | pid: 387004
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | pgrp: 387004
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | corecount: 4
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | event service: False
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | sizes: {0: 2392204, 3: 2392410, 11: 2392438, 9146: 2420740, 9147: 2429778, 9152: 2429892}
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | --------------------------------------------------
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | 
[2024-05-20 01:24:12] 2024-05-19 23:23:54,919 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2024-05-20 01:24:12] 2024-05-19 23:23:54,973 | WARNING  | process 387004 is no longer using CPU - aborting
[2024-05-20 01:24:12] 2024-05-19 23:23:54,973 | INFO     | aborting job monitoring since job object (job id=6205724707) has expired
[2024-05-20 01:24:12] 2024-05-19 23:23:54,990 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,990 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,990 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,991 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,992 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,992 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,992 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-20 01:24:12] 2024-05-19 23:23:54,992 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,992 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-20 01:24:12] 2024-05-19 23:23:54,992 | INFO     | job 6205724707 has completed (purged errors)
[2024-05-20 01:24:12] 2024-05-19 23:23:54,992 | INFO     | overall cleanup function is called
[2024-05-20 01:24:12] 2024-05-19 23:23:55,995 | INFO     | --- collectZombieJob: --- 10, [387004]
[2024-05-20 01:24:12] 2024-05-19 23:23:55,996 | INFO     | zombie collector waiting for pid 387004
[2024-05-20 01:24:12] 2024-05-19 23:23:55,996 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-20 01:24:12] 2024-05-19 23:23:56,999 | INFO     | collected zombie processes
[2024-05-20 01:24:12] 2024-05-19 23:23:57,000 | INFO     | will now attempt to kill all subprocesses of pid=387004
[2024-05-20 01:24:12] 2024-05-19 23:23:57,167 | INFO     | process IDs to be killed: [387004] (in reverse order)
[2024-05-20 01:24:12] 2024-05-19 23:23:57,302 | WARNING  | found no corresponding commands to process id(s)
[2024-05-20 01:24:12] 2024-05-19 23:23:57,302 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-20 01:24:12] 2024-05-19 23:23:57,312 | INFO     | did not find any defunct processes belonging to 387004
[2024-05-20 01:24:12] 2024-05-19 23:23:57,321 | INFO     | did not find any defunct processes belonging to 387004
[2024-05-20 01:24:12] 2024-05-19 23:23:57,321 | INFO     | ready for new job
[2024-05-20 01:24:12] 2024-05-19 23:23:57,321 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-20 01:24:12] 2024-05-19 23:23:57,323 | INFO     | *************************************
[2024-05-20 01:24:12] 2024-05-19 23:23:57,324 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-20 01:24:12] 2024-05-19 23:23:57,324 | INFO     | *************************************
[2024-05-20 01:24:12] 2024-05-19 23:23:57,324 | INFO     | 
[2024-05-20 01:24:12] 2024-05-19 23:23:57,328 | INFO     | architecture information:
[2024-05-20 01:24:12] 2024-05-19 23:23:57,328 | INFO     | executing command: cat /etc/os-release
[2024-05-20 01:24:12] 2024-05-19 23:23:57,345 | INFO     | cat /etc/os-release:
[2024-05-20 01:24:12] NAME="CentOS Linux"
[2024-05-20 01:24:12] VERSION="7 (Core)"
[2024-05-20 01:24:12] ID="centos"
[2024-05-20 01:24:12] ID_LIKE="rhel fedora"
[2024-05-20 01:24:12] VERSION_ID="7"
[2024-05-20 01:24:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-20 01:24:12] ANSI_COLOR="0;31"
[2024-05-20 01:24:12] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-20 01:24:12] HOME_URL="https://www.centos.org/"
[2024-05-20 01:24:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-20 01:24:12] 
[2024-05-20 01:24:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-20 01:24:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-20 01:24:12] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-20 01:24:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-20 01:24:12] 
[2024-05-20 01:24:12] 2024-05-19 23:23:57,346 | INFO     | *************************************
[2024-05-20 01:24:12] 2024-05-19 23:23:57,847 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2024-05-20 01:24:12] 2024-05-19 23:23:57,865 | INFO     | sufficient remaining disk space (596044152832 B)
[2024-05-20 01:24:12] 2024-05-19 23:23:57,865 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-20 01:24:12] 2024-05-19 23:23:57,865 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-20 01:24:12] 2024-05-19 23:23:57,865 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-20 01:24:12] 2024-05-19 23:23:57,866 | INFO     | found 0 job(s) in 20 queues
[2024-05-20 01:24:12] 2024-05-19 23:23:57,866 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 01:24:12] 2024-05-19 23:23:57,866 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-20 01:24:12] 2024-05-19 23:23:58,192 | INFO     | all data control threads have been joined
[2024-05-20 01:24:12] 2024-05-19 23:23:58,295 | INFO     | all payload control threads have been joined
[2024-05-20 01:24:12] 2024-05-19 23:23:58,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-20 01:24:12] 2024-05-19 23:23:58,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 01:24:12] 2024-05-19 23:23:58,480 | INFO     | aborting loop
[2024-05-20 01:24:12] 2024-05-19 23:23:58,871 | INFO     | [job] retrieve thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:23:58,896 | INFO     | all job control threads have been joined
[2024-05-20 01:24:12] 2024-05-19 23:23:59,090 | INFO     | [data] copytool_in thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:23:59,196 | INFO     | [data] control thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:23:59,228 | INFO     | [payload] failed_post thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:23:59,300 | INFO     | [payload] control thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:23:59,485 | INFO     | [job] job monitor thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:23:59,511 | INFO     | [payload] execute_payloads thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:23:59,901 | INFO     | [job] control thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:23:59,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-20 01:24:12] 2024-05-19 23:23:59,954 | INFO     | [job] validate thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:24:00,049 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:24:00,075 | INFO     | [job] create_data_payload thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:24:00,153 | INFO     | [payload] validate_pre thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:24:00,173 | INFO     | [payload] validate_post thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:24:00,448 | INFO     | [data] copytool_out thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:24:00,934 | INFO     | [job] queue monitor thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:24:00,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 01:24:12] 2024-05-19 23:24:05,000 | INFO     | [data] queue_monitor thread has finished
[2024-05-20 01:24:12] 2024-05-19 23:24:06,571 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47986912707648)>', '<ExcThread(monitor, started 47987088160512)>']
[2024-05-20 01:24:12] 2024-05-19 23:24:06,911 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-20 01:24:12] 2024-05-19 23:24:06,912 | INFO     | [monitor] control thread has ended
[2024-05-20 01:24:12] 2024-05-19 23:24:11,593 | INFO     | all workflow threads have been joined
[2024-05-20 01:24:12] 2024-05-19 23:24:11,593 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-20 01:24:12] 2024-05-19 23:24:11,594 | INFO     | traces error code: 0
[2024-05-20 01:24:12] 2024-05-19 23:24:11,594 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 01:24:12] 2024-05-19 23:24:11,678 [wrapper] ==== pilot stdout END ====
[2024-05-20 01:24:12] 2024-05-19 23:24:11,682 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-20 01:24:12] 2024-05-19 23:24:11,686 [wrapper] pilotpid: 379797
[2024-05-20 01:24:12] 2024-05-19 23:24:11,689 [wrapper] Pilot exit status: 0
[2024-05-20 01:24:12] 2024-05-19 23:24:11,699 [wrapper] pandaids: 6205724707
[2024-05-20 01:24:12] 2024-05-19 23:24:11,766 [wrapper] cleanup: SIGTERM to supervisor_pilot  665275 379798
[2024-05-20 01:24:12] 2024-05-19 23:24:11,769 [wrapper] Test setup, not cleaning
[2024-05-20 01:24:12] 2024-05-19 23:24:11,772 [wrapper] ==== wrapper stdout END ====
[2024-05-20 01:24:12] 2024-05-19 23:24:11,775 [wrapper] ==== wrapper stderr END ====
[2024-05-20 01:24:12] 2024-05-19 23:24:11,781 [wrapper] apfmon messages muted
[2024-05-20 01:24:12]  *** Error codes and diagnostics ***
[2024-05-20 01:24:12]     "exeErrorCode": 0,
[2024-05-20 01:24:12]     "exeErrorDiag": "",
[2024-05-20 01:24:12]     "pilotErrorCode": 0,
[2024-05-20 01:24:12]     "pilotErrorDiag": "",
[2024-05-20 01:24:12]  *** Listing of results directory ***
[2024-05-20 01:24:12] total 840112
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc    467845 May 13 07:47 pilot3.tar.gz
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc      5633 May 13 07:55 queuedata.json
[2024-05-20 01:24:12] -rwx------ 1 boinc boinc     32251 May 13 07:55 runpilot2-wrapper.sh
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc       100 May 19 22:50 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 01:24:12] -rwxr-xr-x 1 boinc boinc      7986 May 19 22:50 run_atlas
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc       105 May 19 22:50 job.xml
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc      6663 May 19 22:50 init_data.xml
[2024-05-20 01:24:12] -rw-r--r-- 2 boinc boinc 602990143 May 19 22:50 EVNT.38776119._000087.pool.root.1
[2024-05-20 01:24:12] -rw-r--r-- 2 boinc boinc     17537 May 19 22:50 start_atlas.sh
[2024-05-20 01:24:12] drwxrwx--x 2 boinc boinc      4096 May 19 22:50 shared
[2024-05-20 01:24:12] -rw-r--r-- 2 boinc boinc    480003 May 19 22:50 input.tar.gz
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc         0 May 19 22:50 boinc_lockfile
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc      2633 May 19 22:51 pandaJob.out
[2024-05-20 01:24:12] -rw------- 1 boinc boinc       424 May 19 22:51 setup.sh.local
[2024-05-20 01:24:12] -rw------- 1 boinc boinc   1013701 May 19 22:51 agis_schedconf.cvmfs.json
[2024-05-20 01:24:12] -rw------- 1 boinc boinc         0 May 19 22:51 agis_ddmendpoints.agis.ALL.json
[2024-05-20 01:24:12] -rw------- 1 boinc boinc   1324701 May 19 22:51 cric_ddmendpoints.json
[2024-05-20 01:24:12] drwx------ 4 boinc boinc      4096 May 19 22:51 pilot3
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc       530 May 20 01:23 boinc_task_state.xml
[2024-05-20 01:24:12] -rw------- 1 boinc boinc 251109276 May 20 01:23 HITS.38776125._001166.pool.root.1
[2024-05-20 01:24:12] -rw------- 1 boinc boinc        95 May 20 01:23 pilot_heartbeat.json
[2024-05-20 01:24:12] -rw------- 1 boinc boinc      1046 May 20 01:23 memory_monitor_summary.json
[2024-05-20 01:24:12] -rw------- 1 boinc boinc    294975 May 20 01:23 log.38776125._001166.job.log.tgz.1
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc        27 May 20 01:23 wrapper_checkpoint.txt
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc      8192 May 20 01:23 boinc_mmap_file
[2024-05-20 01:24:12] -rw------- 1 boinc boinc      7757 May 20 01:23 heartbeat.json
[2024-05-20 01:24:12] -rw------- 1 boinc boinc      4344 May 20 01:24 pilotlog.txt
[2024-05-20 01:24:12] -rw------- 1 boinc boinc   1025489 May 20 01:24 log.38776125._001166.job.log.1
[2024-05-20 01:24:12] -rw------- 1 boinc boinc       357 May 20 01:24 output.list
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc       620 May 20 01:24 runtime_log
[2024-05-20 01:24:12] -rw------- 1 boinc boinc   1341440 May 20 01:24 result.tar.gz
[2024-05-20 01:24:12] -rw------- 1 boinc boinc       654 May 20 01:24 srELDm2pdQ5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmMIGKDmQNHgyn.diag
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc     11409 May 20 01:24 runtime_log.err
[2024-05-20 01:24:12] -rw-r--r-- 1 boinc boinc     21425 May 20 01:24 stderr.txt
[2024-05-20 01:24:12] HITS file was successfully produced:
[2024-05-20 01:24:12] -rw------- 1 boinc boinc 251109276 May 20 01:23 shared/HITS.pool.root.1
[2024-05-20 01:24:12]  *** Contents of shared directory: ***
[2024-05-20 01:24:12] total 835896
[2024-05-20 01:24:12] -rw-r--r-- 2 boinc boinc 602990143 May 19 22:50 ATLAS.root_0
[2024-05-20 01:24:12] -rw-r--r-- 2 boinc boinc     17537 May 19 22:50 start_atlas.sh
[2024-05-20 01:24:12] -rw-r--r-- 2 boinc boinc    480003 May 19 22:50 input.tar.gz
[2024-05-20 01:24:12] -rw------- 1 boinc boinc 251109276 May 20 01:23 HITS.pool.root.1
[2024-05-20 01:24:12] -rw------- 1 boinc boinc   1341440 May 20 01:24 result.tar.gz
01:24:13 (375425): run_atlas exited; CPU time 33726.206000
01:24:13 (375425): called boinc_finish(0)

</stderr_txt>
]]>

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