Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)
</message>
<stderr_txt>
): timer handler: client dead, exiting
21:47:11 (59541): wrapper (7.7.26015): starting
21:47:11 (59541): wrapper: running run_atlas (--nthreads 8)
[2024-05-14 21:47:11] Arguments: --nthreads 8
[2024-05-14 21:47:11] Threads: 8
[2024-05-14 21:47:11] This job has been restarted, cleaning up previous attempt
[2024-05-14 21:47:11] Checking for CVMFS
[2024-05-14 21:47:11] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-14 21:47:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-14 21:47:11] Running cvmfs_config stat atlas.cern.ch
[2024-05-14 21:47:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-14 21:47:12] 2.11.2.0 21919 1017 98436 132742 3 319 14407407 18432001 16556 130560 0 5893902 97.977 23861912 45757 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-05-14 21:47:12] CVMFS is ok
[2024-05-14 21:47:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-14 21:47:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-14 21:47:12] Further information can be found at the LHC@home message board.
[2024-05-14 21:47:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-14 21:47:12] Checking for apptainer binary...
[2024-05-14 21:47:12] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-14 21:47:12] Running /usr/bin/apptainer --version
[2024-05-14 21:47:12] apptainer version 1.3.0-1.el7
[2024-05-14 21:47:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-14 21:47:14] c-212-11.aglt2.org
[2024-05-14 21:47:14] apptainer works
[2024-05-14 21:47:14] Set ATHENA_PROC_NUMBER=8
[2024-05-14 21:47:14] Set ATHENA_CORE_NUMBER=8
[2024-05-14 21:47:14] Starting ATLAS job with PandaID=6205594702
[2024-05-14 21:47:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-14 21:50:30] Job failed
[2024-05-14 21:50:30] ++ pwd
[2024-05-14 21:50:30] + export RUNTIME_CONFIG_DIR=/tmp/boinchome/slots/0/
[2024-05-14 21:50:30] + RUNTIME_CONFIG_DIR=/tmp/boinchome/slots/0/
[2024-05-14 21:50:30] + mv ATLAS.root_0 EVNT.38734051._000299.pool.root.1
[2024-05-14 21:50:30] mv: &#226;&#128;&#152;ATLAS.root_0&#226;&#128;&#153; and &#226;&#128;&#152;EVNT.38734051._000299.pool.root.1&#226;&#128;&#153; are the same file
[2024-05-14 21:50:30] + tar --strip-components=5 -xvf input.tar.gz
[2024-05-14 21:50:30] + umask 077
[2024-05-14 21:50:30] ++ date +%s
[2024-05-14 21:50:30] + ACCOUNTING_STARTTIME=1715737635
[2024-05-14 21:50:30] + echo 'Detecting resource accounting method available for the job.'
[2024-05-14 21:50:30] Detecting resource accounting method available for the job.
[2024-05-14 21:50:30] + JOB_ACCOUNTING=
[2024-05-14 21:50:30] + command -v arc-job-cgroup
[2024-05-14 21:50:30] + '[' -z '' ']'
[2024-05-14 21:50:30] + GNU_TIME=/usr/bin/time
[2024-05-14 21:50:30] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2024-05-14 21:50:30] Looking for /usr/bin/time tool for accounting measurements
[2024-05-14 21:50:30] + '[' '!' -z /usr/bin/time ']'
[2024-05-14 21:50:30] + /usr/bin/time --version
[2024-05-14 21:50:30] + echo 'GNU time found and will be used for job accounting.'
[2024-05-14 21:50:30] GNU time found and will be used for job accounting.
[2024-05-14 21:50:30] + JOB_ACCOUNTING=gnutime
[2024-05-14 21:50:30] + '[' -z gnutime ']'
[2024-05-14 21:50:30] + export PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-14 21:50:30] + PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-14 21:50:30] + export GTAG=http://aipanda403.cern.ch/data/jobs/2024-05-13/BOINC_MCORE/6205594702.out
[2024-05-14 21:50:30] + GTAG=http://aipanda403.cern.ch/data/jobs/2024-05-13/BOINC_MCORE/6205594702.out
[2024-05-14 21:50:30] + export PILOT_NOKILL=YES
[2024-05-14 21:50:30] + PILOT_NOKILL=YES
[2024-05-14 21:50:30] + export GRID_GLOBAL_JOBID=TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-14 21:50:30] + GRID_GLOBAL_JOBID=TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-14 21:50:30] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-14 21:50:30] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-14 21:50:30] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-14 21:50:30] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-14 21:50:30] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-14 21:50:30] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-14 21:50:30] ++ pwd
[2024-05-14 21:50:30] + RUNTIME_JOB_DIR=/tmp/boinchome/slots/0
[2024-05-14 21:50:30] + RUNTIME_JOB_STDIN=/dev/null
[2024-05-14 21:50:30] ++ pwd
[2024-05-14 21:50:30] + RUNTIME_JOB_STDOUT=/tmp/boinchome/slots/0/log.38734053._006960.job.log.1
[2024-05-14 21:50:30] ++ pwd
[2024-05-14 21:50:30] + RUNTIME_JOB_STDERR=/tmp/boinchome/slots/0/log.38734053._006960.job.log.1
[2024-05-14 21:50:30] ++ pwd
[2024-05-14 21:50:30] + RUNTIME_JOB_DIAG=/tmp/boinchome/slots/0.diag
[2024-05-14 21:50:30] + '[' '!' -z '' ']'
[2024-05-14 21:50:30] + RUNTIME_LOCAL_SCRATCH_DIR=
[2024-05-14 21:50:30] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2024-05-14 21:50:30] + RUNTIME_FRONTEND_SEES_NODE=
[2024-05-14 21:50:30] + RUNTIME_NODE_SEES_FRONTEND=yes
[2024-05-14 21:50:30] + '[' '!' -z '' ']'
[2024-05-14 21:50:30] + '[' -z yes ']'
[2024-05-14 21:50:30] ++ pwd
[2024-05-14 21:50:30] + RUNTIME_JOB_DIAG=/tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag
[2024-05-14 21:50:30] + runtimeenvironments=
[2024-05-14 21:50:30] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-14 21:50:30] + RTE_function_0 1
[2024-05-14 21:50:30] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-14 21:50:30] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-14 21:50:30] + export BOINC_APP=ATLAS
[2024-05-14 21:50:30] + BOINC_APP=ATLAS
[2024-05-14 21:50:30] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-14 21:50:30] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-14 21:50:30] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-14 21:50:30] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-14 21:50:30] + '[' -z 1 ']'
[2024-05-14 21:50:30] + '[' 1 == 1 ']'
[2024-05-14 21:50:30] + shift
[2024-05-14 21:50:30] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2024-05-14 21:50:30] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-14 21:50:30] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2024-05-14 21:50:30] + export ATLAS_LOCAL_AREA=/tmp/boinchome/slots/0/
[2024-05-14 21:50:30] + ATLAS_LOCAL_AREA=/tmp/boinchome/slots/0/
[2024-05-14 21:50:30] + '[' -e /tmp/boinchome/slots/0/init_data.xml ']'
[2024-05-14 21:50:30] + grep '<use_http_proxy/>' /tmp/boinchome/slots/0/init_data.xml
[2024-05-14 21:50:30] ++ sed -e '/<proxy_info>/,/<\/proxy_info>/ s/^.*<http_server_name>\([^<]*\).*/\1/p' -n /tmp/boinchome/slots/0/init_data.xml
[2024-05-14 21:50:30] + PROXY_HOST=sl-um-es2.slateci.io
[2024-05-14 21:50:30] ++ sed -e '/<proxy_info>/,/<\/proxy_info>/ s/^.*<http_server_port>\([^<]*\).*/\1/p' -n /tmp/boinchome/slots/0/init_data.xml
[2024-05-14 21:50:30] + PROXY_PORT=6081
[2024-05-14 21:50:30] + '[' -n sl-um-es2.slateci.io ']'
[2024-05-14 21:50:30] + '[' -n 6081 ']'
[2024-05-14 21:50:30] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2024-05-14 21:50:30] + FRONTIER_PROXY_URLS='(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-14 21:50:30] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2024-05-14 21:50:30] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-14 21:50:30] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-14 21:50:30] + '[' 0 -ne 0 ']'
[2024-05-14 21:50:30] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2024-05-14 21:50:30] + '[' -f /etc/os-release ']'
[2024-05-14 21:50:30] +++ cat /etc/os-release
[2024-05-14 21:50:30] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2024-05-14 21:50:30] +++ NAME='CentOS Linux'
[2024-05-14 21:50:30] +++ VERSION='7 (Core)'
[2024-05-14 21:50:30] +++ ID=centos
[2024-05-14 21:50:30] +++ ID_LIKE='rhel fedora'
[2024-05-14 21:50:30] +++ VERSION_ID=7
[2024-05-14 21:50:30] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2024-05-14 21:50:30] +++ ANSI_COLOR='0;31'
[2024-05-14 21:50:30] +++ CPE_NAME=cpe:/o:centos:centos:7
[2024-05-14 21:50:30] +++ HOME_URL=https://www.centos.org/
[2024-05-14 21:50:30] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2024-05-14 21:50:30] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2024-05-14 21:50:30] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2024-05-14 21:50:30] +++ REDHAT_SUPPORT_PRODUCT=centos
[2024-05-14 21:50:30] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2024-05-14 21:50:30] ++ echo 'CentOS Linux 7 (Core)'
[2024-05-14 21:50:30] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2024-05-14 21:50:30] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2024-05-14 21:50:30] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2024-05-14 21:50:30] + HOME=/tmp/boinchome/slots/0
[2024-05-14 21:50:30] + export HOME
[2024-05-14 21:50:30] + cd /tmp/boinchome/slots/0
[2024-05-14 21:50:30] + '[' '!' -z '' ']'
[2024-05-14 21:50:30] + '[' -z '' ']'
[2024-05-14 21:50:30] ++ /bin/hostname -f
[2024-05-14 21:50:30] + nodename=c-212-11.aglt2.org
[2024-05-14 21:50:30] + echo nodename=c-212-11.aglt2.org
[2024-05-14 21:50:30] + echo Processors=1
[2024-05-14 21:50:30] + echo Benchmark=HEPSPEC:1.0
[2024-05-14 21:50:30] + executable=./runpilot2-wrapper.sh
[2024-05-14 21:50:30] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2024-05-14 21:50:30] ++ tr -d '\0'
[2024-05-14 21:50:30] ++ dd if=./runpilot2-wrapper.sh count=1
[2024-05-14 21:50:30] ++ head -n 1
[2024-05-14 21:50:30] + line1='#!/bin/bash'
[2024-05-14 21:50:30] ++ echo '#!/bin/bash'
[2024-05-14 21:50:30] ++ sed -n 's/^#! *//p'
[2024-05-14 21:50:30] + shebang=/bin/bash
[2024-05-14 21:50:30] ++ echo /bin/bash
[2024-05-14 21:50:30] ++ awk '{print $1}'
[2024-05-14 21:50:30] + interpreter=/bin/bash
[2024-05-14 21:50:30] + '[' /bin/bash = /usr/bin/env ']'
[2024-05-14 21:50:30] + '[' x/bin/bash = x ']'
[2024-05-14 21:50:30] + type /bin/bash
[2024-05-14 21:50:30] + '[' xgnutime = xgnutime ']'
[2024-05-14 21:50:30] + /usr/bin/time -o /tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.5.4 -z -t --piloturl local --mute --container
[2024-05-14 21:50:30] + RESULT=2
[2024-05-14 21:50:30] + sed -i -e /nodename=/d /tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag
[2024-05-14 21:50:30] ++ awk -F '<' '{print $1}'
[2024-05-14 21:50:30] ++ sed -e 's# #_#g'
[2024-05-14 21:50:30] ++ awk -F '>' '{print $2}'
[2024-05-14 21:50:30] ++ grep domain_name init_data.xml
[2024-05-14 21:50:30] + hostname=c-212-11.aglt2.org
[2024-05-14 21:50:30] ++ grep user_name init_data.xml
[2024-05-14 21:50:30] ++ awk -F '>' '{print $2}'
[2024-05-14 21:50:30] ++ awk -F '<' '{print $1}'
[2024-05-14 21:50:30] ++ sed -e 's# #_#g'
[2024-05-14 21:50:30] + username=AGLT2
[2024-05-14 21:50:30] + nodename=AGLT2@c-212-11.aglt2.org
[2024-05-14 21:50:30] + echo nodename=AGLT2@c-212-11.aglt2.org
[2024-05-14 21:50:30] + '[' -n 8 ']'
[2024-05-14 21:50:30] + sed -i -e s/Processors=1/Processors=8/ /tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag
[2024-05-14 21:50:30] + echo exitcode=2
[2024-05-14 21:50:30] + runtimeenvironments=
[2024-05-14 21:50:30] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-14 21:50:30] + RTE_function_0 2
[2024-05-14 21:50:30] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-14 21:50:30] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-14 21:50:30] + export BOINC_APP=ATLAS
[2024-05-14 21:50:30] + BOINC_APP=ATLAS
[2024-05-14 21:50:30] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-14 21:50:30] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-14 21:50:30] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-14 21:50:30] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-14 21:50:30] + '[' -z 2 ']'
[2024-05-14 21:50:30] + '[' 2 == 1 ']'
[2024-05-14 21:50:30] + '[' 0 -ne 0 ']'
[2024-05-14 21:50:30] + echo 'zip all output files'
[2024-05-14 21:50:30] + flist='*.diag '
[2024-05-14 21:50:30] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-14 21:50:30] + '[' -e ./heartbeat.json ']'
[2024-05-14 21:50:30] + flist='*.diag  ./heartbeat.json'
[2024-05-14 21:50:30] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-14 21:50:30] + '[' -e ./output.list ']'
[2024-05-14 21:50:30] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-14 21:50:30] + '[' -e ./log.38734053._006960.job.log.1 ']'
[2024-05-14 21:50:30] + flist='*.diag  ./heartbeat.json ./log.38734053._006960.job.log.1'
[2024-05-14 21:50:30] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-14 21:50:30] + '[' -e ./log.38734053._006960.job.log.1 ']'
[2024-05-14 21:50:30] + flist='*.diag  ./heartbeat.json ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1'
[2024-05-14 21:50:30] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-14 21:50:30] + '[' -e ./gmlog/ ']'
[2024-05-14 21:50:30] + '[' -f output.list ']'
[2024-05-14 21:50:30] + tar cvf result.tar.gz TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag ./heartbeat.json ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1
[2024-05-14 21:50:30] + '[' xgnutime = xcgroup ']'
[2024-05-14 21:50:30] + '[' -n '' ']'
[2024-05-14 21:50:30] + '[' -n '' ']'
[2024-05-14 21:50:30] ++ date +%s
[2024-05-14 21:50:30] + ACCOUNTING_ENDTIME=1715737829
[2024-05-14 21:50:30] ++ date -d '1970-01-01 UTC 1715737635 seconds' +%Y%m%d%H%M%SZ
[2024-05-14 21:50:30] + echo LRMSStartTime=20240514214715Z
[2024-05-14 21:50:30] ++ date -d '1970-01-01 UTC 1715737829 seconds' +%Y%m%d%H%M%SZ
[2024-05-14 21:50:30] + echo LRMSEndTime=20240514215029Z
[2024-05-14 21:50:30] + echo walltime=194
[2024-05-14 21:50:30] + echo exitcode=2
[2024-05-14 21:50:30] + exit 2
[2024-05-14 21:50:30] INFO:    Cleanup error: while stopping driver for /var/lib/apptainer/mnt/session/final: fuse-overlayfs exited
[2024-05-14 21:50:30] ./runtime_log
[2024-05-14 21:50:30] ./pilot3/pilot/util/realtimelogger.py
[2024-05-14 21:50:30] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2024-05-14 21:50:30] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2024-05-14 21:50:30] ./pilot3/pilot/util/loggingsupport.py
[2024-05-14 21:50:30] ./runtime_log.err
[2024-05-14 21:50:30] ./pilotlog.txt
[2024-05-14 21:50:30] ./log.38734053._006960.job.log.1
[2024-05-14 21:50:30] ./PanDA_Pilot-6205594702/PoolFileCatalog.xml
[2024-05-14 21:50:30] ./PanDA_Pilot-6205594702/PoolFileCatalog.xml.AthenaMP-saved
[2024-05-14 21:50:30] ./PanDA_Pilot-6205594702/log.EVNTtoHITS
[2024-05-14 21:50:30] ./PanDA_Pilot-6205594702/pilotlog.txt
[2024-05-14 21:50:30] ./PanDA_Pilot-6205594702/prmon.log
[2024-05-14 21:50:30] ./PanDA_Pilot-6205594702/PoolFileCatalog.xml.BAK
22:09:34 (66616): wrapper (7.7.26015): starting
22:09:34 (66616): wrapper: running run_atlas (--nthreads 8)
[2024-05-14 22:09:34] Arguments: --nthreads 8
[2024-05-14 22:09:34] Threads: 8
[2024-05-14 22:09:34] This job has been restarted, cleaning up previous attempt
[2024-05-14 22:09:34] Checking for CVMFS
[2024-05-14 22:09:35] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-14 22:09:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-14 22:09:35] Running cvmfs_config stat atlas.cern.ch
[2024-05-14 22:09:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-14 22:09:35] 2.11.2.0 21919 1039 98484 132742 1 371 15115088 18432001 17280 130560 0 6239648 98.047 24103084 45861 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-05-14 22:09:35] CVMFS is ok
[2024-05-14 22:09:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-14 22:09:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-14 22:09:35] Further information can be found at the LHC@home message board.
[2024-05-14 22:09:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-14 22:09:35] Checking for apptainer binary...
[2024-05-14 22:09:35] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-14 22:09:35] Running /usr/bin/apptainer --version
[2024-05-14 22:09:35] apptainer version 1.3.0-1.el7
[2024-05-14 22:09:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-14 22:09:37] c-212-11.aglt2.org
[2024-05-14 22:09:37] apptainer works
[2024-05-14 22:09:37] Set ATHENA_PROC_NUMBER=8
[2024-05-14 22:09:37] Set ATHENA_CORE_NUMBER=8
[2024-05-14 22:09:37] Starting ATLAS job with PandaID=6205594702
[2024-05-14 22:09:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:00:10 (66616): BOINC client no longer exists - exiting
11:00:10 (66616): timer handler: client dead, exiting
11:13:11 (83836): wrapper (7.7.26015): starting
11:13:11 (83836): wrapper: running run_atlas (--nthreads 8)
[2024-05-15 11:13:11] Arguments: --nthreads 8
[2024-05-15 11:13:11] Threads: 8
[2024-05-15 11:13:11] This job has been restarted, cleaning up previous attempt
[2024-05-15 11:13:11] Checking for CVMFS
[2024-05-15 11:13:12] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-15 11:13:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-15 11:13:12] Running cvmfs_config stat atlas.cern.ch
[2024-05-15 11:13:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-15 11:13:12] 2.11.2.0 21919 1823 135352 132763 2 603 11409908 18432000 31655 130560 0 12814901 98.110 47971366 49145 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-05-15 11:13:12] CVMFS is ok
[2024-05-15 11:13:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 11:13:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 11:13:12] Further information can be found at the LHC@home message board.
[2024-05-15 11:13:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 11:13:12] Checking for apptainer binary...
[2024-05-15 11:13:12] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-15 11:13:12] Running /usr/bin/apptainer --version
[2024-05-15 11:13:12] apptainer version 1.3.0-1.el7
[2024-05-15 11:13:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 11:13:14] c-212-11.aglt2.org
[2024-05-15 11:13:14] apptainer works
[2024-05-15 11:13:15] Set ATHENA_PROC_NUMBER=8
[2024-05-15 11:13:15] Set ATHENA_CORE_NUMBER=8
[2024-05-15 11:13:15] Starting ATLAS job with PandaID=6205594702
[2024-05-15 11:13:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:26:31 (83836): BOINC client no longer exists - exiting
16:26:31 (83836): timer handler: client dead, exiting
16:47:52 (26931): wrapper (7.7.26015): starting
16:47:52 (26931): wrapper: running run_atlas (--nthreads 8)
[2024-05-15 16:47:52] Arguments: --nthreads 8
[2024-05-15 16:47:52] Threads: 8
[2024-05-15 16:47:52] This job has been restarted, cleaning up previous attempt
[2024-05-15 16:47:52] Checking for CVMFS
[2024-05-15 16:47:52] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-15 16:47:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-15 16:47:52] Running cvmfs_config stat atlas.cern.ch
[2024-05-15 16:47:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-15 16:47:52] 2.11.2.0 42489 61 99032 132773 2 359 14902042 18432000 10089 130560 0 1131499 96.963 6895307 63647 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-05-15 16:47:52] CVMFS is ok
[2024-05-15 16:47:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 16:47:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 16:47:52] Further information can be found at the LHC@home message board.
[2024-05-15 16:47:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 16:47:52] Checking for apptainer binary...
[2024-05-15 16:47:52] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-15 16:47:52] Running /usr/bin/apptainer --version
[2024-05-15 16:47:52] apptainer version 1.3.0-1.el7
[2024-05-15 16:47:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 16:47:54] c-212-11.aglt2.org
[2024-05-15 16:47:54] apptainer works
[2024-05-15 16:47:54] Set ATHENA_PROC_NUMBER=8
[2024-05-15 16:47:54] Set ATHENA_CORE_NUMBER=8
[2024-05-15 16:47:54] Starting ATLAS job with PandaID=6205594702
[2024-05-15 16:47:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 16:51:03] Job failed
[2024-05-15 16:51:03] ++ pwd
[2024-05-15 16:51:03] + export RUNTIME_CONFIG_DIR=/tmp/boinchome/slots/0/
[2024-05-15 16:51:03] + RUNTIME_CONFIG_DIR=/tmp/boinchome/slots/0/
[2024-05-15 16:51:03] + mv ATLAS.root_0 EVNT.38734051._000299.pool.root.1
[2024-05-15 16:51:03] mv: &#226;&#128;&#152;ATLAS.root_0&#226;&#128;&#153; and &#226;&#128;&#152;EVNT.38734051._000299.pool.root.1&#226;&#128;&#153; are the same file
[2024-05-15 16:51:03] + tar --strip-components=5 -xvf input.tar.gz
[2024-05-15 16:51:03] + umask 077
[2024-05-15 16:51:03] ++ date +%s
[2024-05-15 16:51:03] + ACCOUNTING_STARTTIME=1715806075
[2024-05-15 16:51:03] + echo 'Detecting resource accounting method available for the job.'
[2024-05-15 16:51:03] Detecting resource accounting method available for the job.
[2024-05-15 16:51:03] + JOB_ACCOUNTING=
[2024-05-15 16:51:03] + command -v arc-job-cgroup
[2024-05-15 16:51:03] + '[' -z '' ']'
[2024-05-15 16:51:03] + GNU_TIME=/usr/bin/time
[2024-05-15 16:51:03] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2024-05-15 16:51:03] Looking for /usr/bin/time tool for accounting measurements
[2024-05-15 16:51:03] + '[' '!' -z /usr/bin/time ']'
[2024-05-15 16:51:03] + /usr/bin/time --version
[2024-05-15 16:51:03] + echo 'GNU time found and will be used for job accounting.'
[2024-05-15 16:51:03] GNU time found and will be used for job accounting.
[2024-05-15 16:51:03] + JOB_ACCOUNTING=gnutime
[2024-05-15 16:51:03] + '[' -z gnutime ']'
[2024-05-15 16:51:03] + export PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-15 16:51:03] + PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-15 16:51:03] + export GTAG=http://aipanda403.cern.ch/data/jobs/2024-05-13/BOINC_MCORE/6205594702.out
[2024-05-15 16:51:03] + GTAG=http://aipanda403.cern.ch/data/jobs/2024-05-13/BOINC_MCORE/6205594702.out
[2024-05-15 16:51:03] + export PILOT_NOKILL=YES
[2024-05-15 16:51:03] + PILOT_NOKILL=YES
[2024-05-15 16:51:03] + export GRID_GLOBAL_JOBID=TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-15 16:51:03] + GRID_GLOBAL_JOBID=TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-15 16:51:03] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-15 16:51:03] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-15 16:51:03] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-15 16:51:03] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-15 16:51:03] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-15 16:51:03] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-15 16:51:03] ++ pwd
[2024-05-15 16:51:03] + RUNTIME_JOB_DIR=/tmp/boinchome/slots/0
[2024-05-15 16:51:03] + RUNTIME_JOB_STDIN=/dev/null
[2024-05-15 16:51:03] ++ pwd
[2024-05-15 16:51:03] + RUNTIME_JOB_STDOUT=/tmp/boinchome/slots/0/log.38734053._006960.job.log.1
[2024-05-15 16:51:03] ++ pwd
[2024-05-15 16:51:03] + RUNTIME_JOB_STDERR=/tmp/boinchome/slots/0/log.38734053._006960.job.log.1
[2024-05-15 16:51:03] ++ pwd
[2024-05-15 16:51:03] + RUNTIME_JOB_DIAG=/tmp/boinchome/slots/0.diag
[2024-05-15 16:51:03] + '[' '!' -z '' ']'
[2024-05-15 16:51:03] + RUNTIME_LOCAL_SCRATCH_DIR=
[2024-05-15 16:51:03] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2024-05-15 16:51:03] + RUNTIME_FRONTEND_SEES_NODE=
[2024-05-15 16:51:03] + RUNTIME_NODE_SEES_FRONTEND=yes
[2024-05-15 16:51:03] + '[' '!' -z '' ']'
[2024-05-15 16:51:03] + '[' -z yes ']'
[2024-05-15 16:51:03] ++ pwd
[2024-05-15 16:51:03] + RUNTIME_JOB_DIAG=/tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag
[2024-05-15 16:51:03] + runtimeenvironments=
[2024-05-15 16:51:03] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-15 16:51:03] + RTE_function_0 1
[2024-05-15 16:51:03] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-15 16:51:03] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-15 16:51:03] + export BOINC_APP=ATLAS
[2024-05-15 16:51:03] + BOINC_APP=ATLAS
[2024-05-15 16:51:03] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-15 16:51:03] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-15 16:51:03] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-15 16:51:03] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-15 16:51:03] + '[' -z 1 ']'
[2024-05-15 16:51:03] + '[' 1 == 1 ']'
[2024-05-15 16:51:03] + shift
[2024-05-15 16:51:03] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2024-05-15 16:51:03] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-15 16:51:03] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2024-05-15 16:51:03] + export ATLAS_LOCAL_AREA=/tmp/boinchome/slots/0/
[2024-05-15 16:51:03] + ATLAS_LOCAL_AREA=/tmp/boinchome/slots/0/
[2024-05-15 16:51:03] + '[' -e /tmp/boinchome/slots/0/init_data.xml ']'
[2024-05-15 16:51:03] + grep '<use_http_proxy/>' /tmp/boinchome/slots/0/init_data.xml
[2024-05-15 16:51:03] ++ sed -e '/<proxy_info>/,/<\/proxy_info>/ s/^.*<http_server_name>\([^<]*\).*/\1/p' -n /tmp/boinchome/slots/0/init_data.xml
[2024-05-15 16:51:03] + PROXY_HOST=sl-um-es2.slateci.io
[2024-05-15 16:51:03] ++ sed -e '/<proxy_info>/,/<\/proxy_info>/ s/^.*<http_server_port>\([^<]*\).*/\1/p' -n /tmp/boinchome/slots/0/init_data.xml
[2024-05-15 16:51:03] + PROXY_PORT=6081
[2024-05-15 16:51:03] + '[' -n sl-um-es2.slateci.io ']'
[2024-05-15 16:51:03] + '[' -n 6081 ']'
[2024-05-15 16:51:03] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2024-05-15 16:51:03] + FRONTIER_PROXY_URLS='(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-15 16:51:03] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2024-05-15 16:51:03] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-15 16:51:03] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-15 16:51:03] + '[' 0 -ne 0 ']'
[2024-05-15 16:51:03] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2024-05-15 16:51:03] + '[' -f /etc/os-release ']'
[2024-05-15 16:51:03] +++ cat /etc/os-release
[2024-05-15 16:51:03] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2024-05-15 16:51:03] +++ NAME='CentOS Linux'
[2024-05-15 16:51:03] +++ VERSION='7 (Core)'
[2024-05-15 16:51:03] +++ ID=centos
[2024-05-15 16:51:03] +++ ID_LIKE='rhel fedora'
[2024-05-15 16:51:03] +++ VERSION_ID=7
[2024-05-15 16:51:03] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2024-05-15 16:51:03] +++ ANSI_COLOR='0;31'
[2024-05-15 16:51:03] +++ CPE_NAME=cpe:/o:centos:centos:7
[2024-05-15 16:51:03] +++ HOME_URL=https://www.centos.org/
[2024-05-15 16:51:03] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2024-05-15 16:51:03] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2024-05-15 16:51:03] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2024-05-15 16:51:03] +++ REDHAT_SUPPORT_PRODUCT=centos
[2024-05-15 16:51:03] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2024-05-15 16:51:03] ++ echo 'CentOS Linux 7 (Core)'
[2024-05-15 16:51:03] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2024-05-15 16:51:03] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2024-05-15 16:51:03] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2024-05-15 16:51:03] + HOME=/tmp/boinchome/slots/0
[2024-05-15 16:51:03] + export HOME
[2024-05-15 16:51:03] + cd /tmp/boinchome/slots/0
[2024-05-15 16:51:03] + '[' '!' -z '' ']'
[2024-05-15 16:51:03] + '[' -z '' ']'
[2024-05-15 16:51:03] ++ /bin/hostname -f
[2024-05-15 16:51:03] + nodename=c-212-11.aglt2.org
[2024-05-15 16:51:03] + echo nodename=c-212-11.aglt2.org
[2024-05-15 16:51:03] + echo Processors=1
[2024-05-15 16:51:03] + echo Benchmark=HEPSPEC:1.0
[2024-05-15 16:51:03] + executable=./runpilot2-wrapper.sh
[2024-05-15 16:51:03] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2024-05-15 16:51:03] ++ dd if=./runpilot2-wrapper.sh count=1
[2024-05-15 16:51:03] ++ head -n 1
[2024-05-15 16:51:03] ++ tr -d '\0'
[2024-05-15 16:51:03] + line1='#!/bin/bash'
[2024-05-15 16:51:03] ++ echo '#!/bin/bash'
[2024-05-15 16:51:03] ++ sed -n 's/^#! *//p'
[2024-05-15 16:51:03] + shebang=/bin/bash
[2024-05-15 16:51:03] ++ echo /bin/bash
[2024-05-15 16:51:03] ++ awk '{print $1}'
[2024-05-15 16:51:03] + interpreter=/bin/bash
[2024-05-15 16:51:03] + '[' /bin/bash = /usr/bin/env ']'
[2024-05-15 16:51:03] + '[' x/bin/bash = x ']'
[2024-05-15 16:51:03] + type /bin/bash
[2024-05-15 16:51:03] + '[' xgnutime = xgnutime ']'
[2024-05-15 16:51:03] + /usr/bin/time -o /tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.5.4 -z -t --piloturl local --mute --container
[2024-05-15 16:51:03] + RESULT=2
[2024-05-15 16:51:03] + sed -i -e /nodename=/d /tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag
[2024-05-15 16:51:03] ++ grep domain_name init_data.xml
[2024-05-15 16:51:03] ++ awk -F '>' '{print $2}'
[2024-05-15 16:51:03] ++ awk -F '<' '{print $1}'
[2024-05-15 16:51:03] ++ sed -e 's# #_#g'
[2024-05-15 16:51:03] + hostname=c-212-11.aglt2.org
[2024-05-15 16:51:03] ++ grep user_name init_data.xml
[2024-05-15 16:51:03] ++ awk -F '>' '{print $2}'
[2024-05-15 16:51:03] ++ awk -F '<' '{print $1}'
[2024-05-15 16:51:03] ++ sed -e 's# #_#g'
[2024-05-15 16:51:03] + username=AGLT2
[2024-05-15 16:51:03] + nodename=AGLT2@c-212-11.aglt2.org
[2024-05-15 16:51:03] + echo nodename=AGLT2@c-212-11.aglt2.org
[2024-05-15 16:51:03] + '[' -n 8 ']'
[2024-05-15 16:51:03] + sed -i -e s/Processors=1/Processors=8/ /tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag
[2024-05-15 16:51:03] + echo exitcode=2
[2024-05-15 16:51:03] + runtimeenvironments=
[2024-05-15 16:51:03] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-15 16:51:03] + RTE_function_0 2
[2024-05-15 16:51:03] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-15 16:51:03] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-15 16:51:03] + export BOINC_APP=ATLAS
[2024-05-15 16:51:03] + BOINC_APP=ATLAS
[2024-05-15 16:51:03] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-15 16:51:03] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-15 16:51:03] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-15 16:51:03] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-15 16:51:03] + '[' -z 2 ']'
[2024-05-15 16:51:03] + '[' 2 == 1 ']'
[2024-05-15 16:51:03] + '[' 0 -ne 0 ']'
[2024-05-15 16:51:03] + echo 'zip all output files'
[2024-05-15 16:51:03] + flist='*.diag '
[2024-05-15 16:51:03] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-15 16:51:03] + '[' -e ./heartbeat.json ']'
[2024-05-15 16:51:03] + flist='*.diag  ./heartbeat.json'
[2024-05-15 16:51:03] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-15 16:51:03] + '[' -e ./output.list ']'
[2024-05-15 16:51:03] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-15 16:51:03] + '[' -e ./log.38734053._006960.job.log.1 ']'
[2024-05-15 16:51:03] + flist='*.diag  ./heartbeat.json ./log.38734053._006960.job.log.1'
[2024-05-15 16:51:03] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-15 16:51:03] + '[' -e ./log.38734053._006960.job.log.1 ']'
[2024-05-15 16:51:03] + flist='*.diag  ./heartbeat.json ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1'
[2024-05-15 16:51:03] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-15 16:51:03] + '[' -e ./gmlog/ ']'
[2024-05-15 16:51:03] + '[' -f output.list ']'
[2024-05-15 16:51:03] + tar cvf result.tar.gz TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag ./heartbeat.json ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1
[2024-05-15 16:51:03] + '[' xgnutime = xcgroup ']'
[2024-05-15 16:51:03] + '[' -n '' ']'
[2024-05-15 16:51:03] + '[' -n '' ']'
[2024-05-15 16:51:03] ++ date +%s
[2024-05-15 16:51:03] + ACCOUNTING_ENDTIME=1715806262
[2024-05-15 16:51:03] ++ date -d '1970-01-01 UTC 1715806075 seconds' +%Y%m%d%H%M%SZ
[2024-05-15 16:51:03] + echo LRMSStartTime=20240515164755Z
[2024-05-15 16:51:03] ++ date -d '1970-01-01 UTC 1715806262 seconds' +%Y%m%d%H%M%SZ
[2024-05-15 16:51:03] + echo LRMSEndTime=20240515165102Z
[2024-05-15 16:51:03] + echo walltime=187
[2024-05-15 16:51:03] + echo exitcode=2
[2024-05-15 16:51:03] + exit 2
[2024-05-15 16:51:03] INFO:    Cleanup error: while stopping driver for /var/lib/apptainer/mnt/session/final: fuse-overlayfs exited
[2024-05-15 16:51:03] ./runtime_log
[2024-05-15 16:51:03] ./pilot3/pilot/util/realtimelogger.py
[2024-05-15 16:51:03] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2024-05-15 16:51:03] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2024-05-15 16:51:03] ./pilot3/pilot/util/loggingsupport.py
[2024-05-15 16:51:03] ./runtime_log.err
[2024-05-15 16:51:03] ./pilotlog.txt
[2024-05-15 16:51:03] ./log.38734053._006960.job.log.1
[2024-05-15 16:51:03] ./PanDA_Pilot-6205594702/PoolFileCatalog.xml
[2024-05-15 16:51:03] ./PanDA_Pilot-6205594702/PoolFileCatalog.xml.AthenaMP-saved
[2024-05-15 16:51:03] ./PanDA_Pilot-6205594702/log.EVNTtoHITS
[2024-05-15 16:51:03] ./PanDA_Pilot-6205594702/pilotlog.txt
[2024-05-15 16:51:03] ./PanDA_Pilot-6205594702/prmon.log
[2024-05-15 16:51:03] ./PanDA_Pilot-6205594702/PoolFileCatalog.xml.BAK
17:11:13 (27190): wrapper (7.7.26015): starting
17:11:13 (27190): wrapper: running run_atlas (--nthreads 8)
[2024-05-15 17:11:13] Arguments: --nthreads 8
[2024-05-15 17:11:13] Threads: 8
[2024-05-15 17:11:13] This job has been restarted, cleaning up previous attempt
[2024-05-15 17:11:13] Checking for CVMFS
[2024-05-15 17:11:13] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-15 17:11:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-15 17:11:13] Running cvmfs_config stat atlas.cern.ch
[2024-05-15 17:11:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-15 17:11:13] 2.11.2.0 42489 84 126152 132773 3 541 16781280 18432000 10432 130560 0 1572824 97.422 7600836 65083 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-05-15 17:11:13] CVMFS is ok
[2024-05-15 17:11:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 17:11:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 17:11:13] Further information can be found at the LHC@home message board.
[2024-05-15 17:11:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 17:11:13] Checking for apptainer binary...
[2024-05-15 17:11:13] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-15 17:11:13] Running /usr/bin/apptainer --version
[2024-05-15 17:11:13] apptainer version 1.3.0-1.el7
[2024-05-15 17:11:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 17:11:14] c-212-11.aglt2.org
[2024-05-15 17:11:14] apptainer works
[2024-05-15 17:11:14] Set ATHENA_PROC_NUMBER=8
[2024-05-15 17:11:14] Set ATHENA_CORE_NUMBER=8
[2024-05-15 17:11:14] Starting ATLAS job with PandaID=6205594702
[2024-05-15 17:11:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 19:22:23] Job failed
[2024-05-15 19:22:23] ++ pwd
[2024-05-15 19:22:23] + export RUNTIME_CONFIG_DIR=/tmp/boinchome/slots/0/
[2024-05-15 19:22:23] + RUNTIME_CONFIG_DIR=/tmp/boinchome/slots/0/
[2024-05-15 19:22:23] + mv ATLAS.root_0 EVNT.38734051._000299.pool.root.1
[2024-05-15 19:22:23] mv: &#226;&#128;&#152;ATLAS.root_0&#226;&#128;&#153; and &#226;&#128;&#152;EVNT.38734051._000299.pool.root.1&#226;&#128;&#153; are the same file
[2024-05-15 19:22:23] + tar --strip-components=5 -xvf input.tar.gz
[2024-05-15 19:22:23] + umask 077
[2024-05-15 19:22:23] ++ date +%s
[2024-05-15 19:22:23] + ACCOUNTING_STARTTIME=1715807475
[2024-05-15 19:22:23] + echo 'Detecting resource accounting method available for the job.'
[2024-05-15 19:22:23] Detecting resource accounting method available for the job.
[2024-05-15 19:22:23] + JOB_ACCOUNTING=
[2024-05-15 19:22:23] + command -v arc-job-cgroup
[2024-05-15 19:22:23] + '[' -z '' ']'
[2024-05-15 19:22:23] + GNU_TIME=/usr/bin/time
[2024-05-15 19:22:23] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2024-05-15 19:22:23] Looking for /usr/bin/time tool for accounting measurements
[2024-05-15 19:22:23] + '[' '!' -z /usr/bin/time ']'
[2024-05-15 19:22:23] + /usr/bin/time --version
[2024-05-15 19:22:23] + echo 'GNU time found and will be used for job accounting.'
[2024-05-15 19:22:23] GNU time found and will be used for job accounting.
[2024-05-15 19:22:23] + JOB_ACCOUNTING=gnutime
[2024-05-15 19:22:23] + '[' -z gnutime ']'
[2024-05-15 19:22:23] + export PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-15 19:22:23] + PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-15 19:22:23] + export GTAG=http://aipanda403.cern.ch/data/jobs/2024-05-13/BOINC_MCORE/6205594702.out
[2024-05-15 19:22:23] + GTAG=http://aipanda403.cern.ch/data/jobs/2024-05-13/BOINC_MCORE/6205594702.out
[2024-05-15 19:22:23] + export PILOT_NOKILL=YES
[2024-05-15 19:22:23] + PILOT_NOKILL=YES
[2024-05-15 19:22:23] + export GRID_GLOBAL_JOBID=TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-15 19:22:23] + GRID_GLOBAL_JOBID=TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-15 19:22:23] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-15 19:22:23] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn
[2024-05-15 19:22:23] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-15 19:22:23] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-15 19:22:23] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-15 19:22:23] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-15 19:22:23] ++ pwd
[2024-05-15 19:22:23] + RUNTIME_JOB_DIR=/tmp/boinchome/slots/0
[2024-05-15 19:22:23] + RUNTIME_JOB_STDIN=/dev/null
[2024-05-15 19:22:23] ++ pwd
[2024-05-15 19:22:23] + RUNTIME_JOB_STDOUT=/tmp/boinchome/slots/0/log.38734053._006960.job.log.1
[2024-05-15 19:22:23] ++ pwd
[2024-05-15 19:22:23] + RUNTIME_JOB_STDERR=/tmp/boinchome/slots/0/log.38734053._006960.job.log.1
[2024-05-15 19:22:23] ++ pwd
[2024-05-15 19:22:23] + RUNTIME_JOB_DIAG=/tmp/boinchome/slots/0.diag
[2024-05-15 19:22:23] + '[' '!' -z '' ']'
[2024-05-15 19:22:23] + RUNTIME_LOCAL_SCRATCH_DIR=
[2024-05-15 19:22:23] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2024-05-15 19:22:23] + RUNTIME_FRONTEND_SEES_NODE=
[2024-05-15 19:22:23] + RUNTIME_NODE_SEES_FRONTEND=yes
[2024-05-15 19:22:23] + '[' '!' -z '' ']'
[2024-05-15 19:22:23] + '[' -z yes ']'
[2024-05-15 19:22:23] ++ pwd
[2024-05-15 19:22:23] + RUNTIME_JOB_DIAG=/tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag
[2024-05-15 19:22:23] + runtimeenvironments=
[2024-05-15 19:22:23] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-15 19:22:23] + RTE_function_0 1
[2024-05-15 19:22:23] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-15 19:22:23] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-15 19:22:23] + export BOINC_APP=ATLAS
[2024-05-15 19:22:23] + BOINC_APP=ATLAS
[2024-05-15 19:22:23] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-15 19:22:23] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-15 19:22:23] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-15 19:22:23] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-15 19:22:23] + '[' -z 1 ']'
[2024-05-15 19:22:23] + '[' 1 == 1 ']'
[2024-05-15 19:22:23] + shift
[2024-05-15 19:22:23] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2024-05-15 19:22:23] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-15 19:22:23] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2024-05-15 19:22:23] + export ATLAS_LOCAL_AREA=/tmp/boinchome/slots/0/
[2024-05-15 19:22:23] + ATLAS_LOCAL_AREA=/tmp/boinchome/slots/0/
[2024-05-15 19:22:23] + '[' -e /tmp/boinchome/slots/0/init_data.xml ']'
[2024-05-15 19:22:23] + grep '<use_http_proxy/>' /tmp/boinchome/slots/0/init_data.xml
[2024-05-15 19:22:23] ++ sed -e '/<proxy_info>/,/<\/proxy_info>/ s/^.*<http_server_name>\([^<]*\).*/\1/p' -n /tmp/boinchome/slots/0/init_data.xml
[2024-05-15 19:22:23] + PROXY_HOST=sl-um-es2.slateci.io
[2024-05-15 19:22:23] ++ sed -e '/<proxy_info>/,/<\/proxy_info>/ s/^.*<http_server_port>\([^<]*\).*/\1/p' -n /tmp/boinchome/slots/0/init_data.xml
[2024-05-15 19:22:23] + PROXY_PORT=6081
[2024-05-15 19:22:23] + '[' -n sl-um-es2.slateci.io ']'
[2024-05-15 19:22:23] + '[' -n 6081 ']'
[2024-05-15 19:22:23] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2024-05-15 19:22:23] + FRONTIER_PROXY_URLS='(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-15 19:22:23] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2024-05-15 19:22:23] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-15 19:22:23] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-15 19:22:23] + '[' 0 -ne 0 ']'
[2024-05-15 19:22:23] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2024-05-15 19:22:23] + '[' -f /etc/os-release ']'
[2024-05-15 19:22:23] +++ cat /etc/os-release
[2024-05-15 19:22:23] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2024-05-15 19:22:23] +++ NAME='CentOS Linux'
[2024-05-15 19:22:23] +++ VERSION='7 (Core)'
[2024-05-15 19:22:23] +++ ID=centos
[2024-05-15 19:22:23] +++ ID_LIKE='rhel fedora'
[2024-05-15 19:22:23] +++ VERSION_ID=7
[2024-05-15 19:22:23] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2024-05-15 19:22:23] +++ ANSI_COLOR='0;31'
[2024-05-15 19:22:23] +++ CPE_NAME=cpe:/o:centos:centos:7
[2024-05-15 19:22:23] +++ HOME_URL=https://www.centos.org/
[2024-05-15 19:22:23] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2024-05-15 19:22:23] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2024-05-15 19:22:23] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2024-05-15 19:22:23] +++ REDHAT_SUPPORT_PRODUCT=centos
[2024-05-15 19:22:23] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2024-05-15 19:22:23] ++ echo 'CentOS Linux 7 (Core)'
[2024-05-15 19:22:23] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2024-05-15 19:22:23] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2024-05-15 19:22:23] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2024-05-15 19:22:23] + HOME=/tmp/boinchome/slots/0
[2024-05-15 19:22:23] + export HOME
[2024-05-15 19:22:23] + cd /tmp/boinchome/slots/0
[2024-05-15 19:22:23] + '[' '!' -z '' ']'
[2024-05-15 19:22:23] + '[' -z '' ']'
[2024-05-15 19:22:23] ++ /bin/hostname -f
[2024-05-15 19:22:23] + nodename=c-212-11.aglt2.org
[2024-05-15 19:22:23] + echo nodename=c-212-11.aglt2.org
[2024-05-15 19:22:23] + echo Processors=1
[2024-05-15 19:22:23] + echo Benchmark=HEPSPEC:1.0
[2024-05-15 19:22:23] + executable=./runpilot2-wrapper.sh
[2024-05-15 19:22:23] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2024-05-15 19:22:23] ++ dd if=./runpilot2-wrapper.sh count=1
[2024-05-15 19:22:23] ++ head -n 1
[2024-05-15 19:22:23] ++ tr -d '\0'
[2024-05-15 19:22:23] + line1='#!/bin/bash'
[2024-05-15 19:22:23] ++ echo '#!/bin/bash'
[2024-05-15 19:22:23] ++ sed -n 's/^#! *//p'
[2024-05-15 19:22:23] + shebang=/bin/bash
[2024-05-15 19:22:23] ++ echo /bin/bash
[2024-05-15 19:22:23] ++ awk '{print $1}'
[2024-05-15 19:22:23] + interpreter=/bin/bash
[2024-05-15 19:22:23] + '[' /bin/bash = /usr/bin/env ']'
[2024-05-15 19:22:23] + '[' x/bin/bash = x ']'
[2024-05-15 19:22:23] + type /bin/bash
[2024-05-15 19:22:23] + '[' xgnutime = xgnutime ']'
[2024-05-15 19:22:23] + /usr/bin/time -o /tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.5.4 -z -t --piloturl local --mute --container
[2024-05-15 19:22:23] start_atlas.sh: line 257: 29517 Bus error               $GNU_TIME -o "$RUNTIME_JOB_DIAG" -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' "./runpilot2-wrapper.sh" "-q" "BOINC_MCORE" "-j" "managed" "--pilot-user" "ATLAS" "--harvester-submit-mode" "PUSH" "-w" "generic" "--job-type" "managed" "--resource-type" "SCORE_HIMEM" "--pilotversion" "3.7.5.4" "-z" "-t" "--piloturl" "local" "--mute" "--container" < $RUNTIME_JOB_STDIN > $RUNTIME_JOB_STDOUT 2>&1
[2024-05-15 19:22:23] + RESULT=135
[2024-05-15 19:22:23] + sed -i -e /nodename=/d /tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag
[2024-05-15 19:22:23] start_atlas.sh: line 260: /usr/bin/sed: Transport endpoint is not connected
[2024-05-15 19:22:23] ++ grep domain_name init_data.xml
[2024-05-15 19:22:23] ++ awk -F '>' '{print $2}'
[2024-05-15 19:22:23] start_atlas.sh: line 261: /usr/bin/grep: Transport endpoint is not connected
[2024-05-15 19:22:23] ++ awk -F '<' '{print $1}'
[2024-05-15 19:22:23] start_atlas.sh: line 261: awk: command not found
[2024-05-15 19:22:23] ++ sed -e 's# #_#g'
[2024-05-15 19:22:23] start_atlas.sh: line 261: awk: command not found
[2024-05-15 19:22:23] start_atlas.sh: line 261: /usr/bin/sed: Transport endpoint is not connected
[2024-05-15 19:22:23] + hostname=
[2024-05-15 19:22:23] ++ grep user_name init_data.xml
[2024-05-15 19:22:23] ++ awk -F '>' '{print $2}'
[2024-05-15 19:22:23] start_atlas.sh: line 262: /usr/bin/grep: Transport endpoint is not connected
[2024-05-15 19:22:23] ++ awk -F '<' '{print $1}'
[2024-05-15 19:22:23] start_atlas.sh: line 262: awk: command not found
[2024-05-15 19:22:23] start_atlas.sh: line 262: awk: command not found
[2024-05-15 19:22:23] ++ sed -e 's# #_#g'
[2024-05-15 19:22:23] start_atlas.sh: line 262: /usr/bin/sed: Transport endpoint is not connected
[2024-05-15 19:22:23] + username=
[2024-05-15 19:22:23] + nodename=@
[2024-05-15 19:22:23] + echo nodename=@
[2024-05-15 19:22:23] + '[' -n 8 ']'
[2024-05-15 19:22:23] + sed -i -e s/Processors=1/Processors=8/ /tmp/boinchome/slots/0/TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag
[2024-05-15 19:22:23] start_atlas.sh: line 265: /usr/bin/sed: Transport endpoint is not connected
[2024-05-15 19:22:23] + echo exitcode=135
[2024-05-15 19:22:23] + runtimeenvironments=
[2024-05-15 19:22:23] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-15 19:22:23] + RTE_function_0 2
[2024-05-15 19:22:23] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-15 19:22:23] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-15 19:22:23] + export BOINC_APP=ATLAS
[2024-05-15 19:22:23] + BOINC_APP=ATLAS
[2024-05-15 19:22:23] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-15 19:22:23] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-15 19:22:23] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-15 19:22:23] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-15 19:22:23] + '[' -z 2 ']'
[2024-05-15 19:22:23] + '[' 2 == 1 ']'
[2024-05-15 19:22:23] + '[' 0 -ne 0 ']'
[2024-05-15 19:22:23] + echo 'zip all output files'
[2024-05-15 19:22:23] + flist='*.diag '
[2024-05-15 19:22:23] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-15 19:22:23] + '[' -e ./heartbeat.json ']'
[2024-05-15 19:22:23] + flist='*.diag  ./heartbeat.json'
[2024-05-15 19:22:23] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-15 19:22:23] + '[' -e ./output.list ']'
[2024-05-15 19:22:23] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-15 19:22:23] + '[' -e ./log.38734053._006960.job.log.1 ']'
[2024-05-15 19:22:23] + flist='*.diag  ./heartbeat.json ./log.38734053._006960.job.log.1'
[2024-05-15 19:22:23] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-15 19:22:23] + '[' -e ./log.38734053._006960.job.log.1 ']'
[2024-05-15 19:22:23] + flist='*.diag  ./heartbeat.json ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1'
[2024-05-15 19:22:23] + for f in ./heartbeat.json ./output.list ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1 ./gmlog/
[2024-05-15 19:22:23] + '[' -e ./gmlog/ ']'
[2024-05-15 19:22:23] + '[' -f output.list ']'
[2024-05-15 19:22:23] + tar cvf result.tar.gz TXnNDmjBcQ5nsSi4apGgGQJmABFKDmABFKDm4ySLDmgNJKDm1xXgPn.diag ./heartbeat.json ./log.38734053._006960.job.log.1 ./log.38734053._006960.job.log.1
[2024-05-15 19:22:23] start_atlas.sh: line 297: /usr/bin/tar: Transport endpoint is not connected
[2024-05-15 19:22:23] + '[' xgnutime = xcgroup ']'
[2024-05-15 19:22:23] + '[' -n '' ']'
[2024-05-15 19:22:23] + '[' -n '' ']'
[2024-05-15 19:22:23] ++ date +%s
[2024-05-15 19:22:23] start_atlas.sh: line 349: /usr/bin/date: Transport endpoint is not connected
[2024-05-15 19:22:23] + ACCOUNTING_ENDTIME=
[2024-05-15 19:22:23] ++ date -d '1970-01-01 UTC 1715807475 seconds' +%Y%m%d%H%M%SZ
[2024-05-15 19:22:23] start_atlas.sh: line 351: /usr/bin/date: Transport endpoint is not connected
[2024-05-15 19:22:23] + echo LRMSStartTime=
[2024-05-15 19:22:23] ++ date -d '1970-01-01 UTC  seconds' +%Y%m%d%H%M%SZ
[2024-05-15 19:22:23] start_atlas.sh: line 352: /usr/bin/date: Transport endpoint is not connected
[2024-05-15 19:22:23] + echo LRMSEndTime=
[2024-05-15 19:22:23] + echo walltime=-1715807475
[2024-05-15 19:22:23] + echo exitcode=135
[2024-05-15 19:22:23] + exit 135
[2024-05-15 19:22:23] INFO:    Cleanup error: while stopping driver for /var/lib/apptainer/mnt/session/final: fuse-overlayfs exited
[2024-05-15 19:22:23] ./runtime_log
[2024-05-15 19:22:23] ./pilot3/pilot/util/realtimelogger.py
[2024-05-15 19:22:23] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2024-05-15 19:22:23] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2024-05-15 19:22:23] ./pilot3/pilot/util/loggingsupport.py
[2024-05-15 19:22:23] ./runtime_log.err
[2024-05-15 19:22:23] ./pilotlog.txt
[2024-05-15 19:22:23] ./log.38734053._006960.job.log.1
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/PoolFileCatalog.xml
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/PoolFileCatalog.xml.AthenaMP-saved
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/log.EVNTtoHITS
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_5/PoolFileCatalog.xml
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_5/PoolFileCatalog.xml.BAK
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_5/AthenaMP.log
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_0/PoolFileCatalog.xml
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_0/PoolFileCatalog.xml.BAK
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_0/AthenaMP.log
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_4/PoolFileCatalog.xml
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_4/PoolFileCatalog.xml.BAK
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_4/AthenaMP.log
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_6/PoolFileCatalog.xml
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_6/PoolFileCatalog.xml.BAK
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_6/AthenaMP.log
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/evt_counter/PoolFileCatalog.xml
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/evt_counter/PoolFileCatalog.xml.BAK
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/evt_counter/AthenaMP.log
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_1/PoolFileCatalog.xml
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_1/PoolFileCatalog.xml.BAK
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_1/AthenaMP.log
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_7/PoolFileCatalog.xml
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_7/PoolFileCatalog.xml.BAK
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_7/AthenaMP.log
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_2/PoolFileCatalog.xml
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_2/PoolFileCatalog.xml.BAK
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_2/AthenaMP.log
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_3/PoolFileCatalog.xml
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_3/PoolFileCatalog.xml.BAK
[2024-05-15 19:22:23] ./PanDA_Pilot-6205594702/athenaMP-workers-EVNTtoHITS-sim/worker_3/AthenaMP.log
[2024-05-15 19:22:23] ./PanDA_Pilot-62055947

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