Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:31:32 (3378004): wrapper (7.7.26015): starting
07:31:32 (3378004): wrapper: running run_atlas (--nthreads 4)
[2024-05-16 07:31:33] Arguments: --nthreads 4
[2024-05-16 07:31:33] Threads: 4
[2024-05-16 07:31:33] Checking for CVMFS
[2024-05-16 07:31:33] No cvmfs_config command found, will try listing directly
[2024-05-16 07:31:33] CVMFS is ok
[2024-05-16 07:31:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-16 07:31:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-16 07:31:33] Further information can be found at the LHC@home message board.
[2024-05-16 07:31:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-16 07:31:33] Checking for apptainer binary...
[2024-05-16 07:31:33] which: no apptainer in ((null))
[2024-05-16 07:31:33] apptainer is not installed, using version from CVMFS
[2024-05-16 07:31:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-16 07:31:34] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2024-05-16 07:31:34] apptainer works
[2024-05-16 07:31:34] Set ATHENA_PROC_NUMBER=4
[2024-05-16 07:31:34] Set ATHENA_CORE_NUMBER=4
[2024-05-16 07:31:35] Starting ATLAS job with PandaID=6201836305
[2024-05-16 07:31:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 01:12:23]  *** The last 200 lines of the pilot log: ***
[2024-05-17 01:12:23] 2024-05-16 23:11:58,742 | INFO     | preparing for final server update for job 6201836305 in state='finished'
[2024-05-17 01:12:23] 2024-05-16 23:11:58,743 | INFO     | this job has now completed (state=finished)
[2024-05-17 01:12:23] 2024-05-16 23:11:58,743 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 01:12:23] 2024-05-16 23:11:58,743 | INFO     | job 6201836305 has finished - writing final server update
[2024-05-17 01:12:23] 2024-05-16 23:11:58,743 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_23775/.job.ad'
[2024-05-17 01:12:23] 2024-05-16 23:11:58,743 | INFO     | total number of processed events: 1950 (read)
[2024-05-17 01:12:23] 2024-05-16 23:11:58,750 | INFO     | executing command: lscpu
[2024-05-17 01:12:23] 2024-05-16 23:11:58,794 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-05-17 01:12:23] 2024-05-16 23:11:58,794 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 01:12:23] 2024-05-16 23:11:58,834 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 01:12:23] 2024-05-16 23:12:00,069 | INFO     | monitor loop #4744: job 0:6201836305 is in state 'finished'
[2024-05-17 01:12:23] 2024-05-16 23:12:00,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 01:12:23] 2024-05-16 23:12:02,573 | INFO     | monitor loop #4745: job 0:6201836305 is in state 'finished'
[2024-05-17 01:12:23] 2024-05-16 23:12:02,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 01:12:23] 2024-05-16 23:12:02,862 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-17 01:12:23] 2024-05-16 23:12:02,862 | INFO     | using path: /scratch/boinc/var/slot128/slots/1/PanDA_Pilot-6201836305/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 01:12:23] 2024-05-16 23:12:02,863 | INFO     | extracted standard info from prmon json
[2024-05-17 01:12:23] 2024-05-16 23:12:02,864 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 01:12:23] 2024-05-16 23:12:02,864 | WARNING  | GPU info not found in prmon json
[2024-05-17 01:12:23] 2024-05-16 23:12:02,878 | INFO     | fitting pss+swap vs Time
[2024-05-17 01:12:23] 2024-05-16 23:12:02,879 | INFO     | model: linear, x: [1715837585.0, 1715837646.0, 1715837707.0, 1715837768.0, 1715837829.0, 1715837890.0, 1715837951.0, 1715838012.0, 1715838073.0, 1715838134.0, 1715
[2024-05-17 01:12:23] 2024-05-16 23:12:02,880 | INFO     | sum of square deviations: 350817444680.5
[2024-05-17 01:12:23] 2024-05-16 23:12:02,897 | INFO     | sum of deviations: 2069939090950.4995
[2024-05-17 01:12:23] 2024-05-16 23:12:02,897 | INFO     | mean x: 1715869335.5
[2024-05-17 01:12:23] 2024-05-16 23:12:02,897 | INFO     | mean y: 2627406.158349328
[2024-05-17 01:12:23] 2024-05-16 23:12:02,897 | INFO     | -- intersect: -10121569854.754341
[2024-05-17 01:12:23] 2024-05-16 23:12:02,897 | INFO     | intersect: -10121569854.754341
[2024-05-17 01:12:23] 2024-05-16 23:12:02,898 | INFO     | chi2: 13.851716908424034
[2024-05-17 01:12:23] 2024-05-16 23:12:02,899 | INFO     | model: linear, x: [1715837585.0, 1715837646.0, 1715837707.0, 1715837768.0, 1715837829.0, 1715837890.0, 1715837951.0, 1715838012.0, 1715838073.0, 1715838134.0, 1715
[2024-05-17 01:12:23] 2024-05-16 23:12:02,899 | INFO     | sum of square deviations: 345791480678.0
[2024-05-17 01:12:23] 2024-05-16 23:12:02,916 | INFO     | sum of deviations: 2367696513828.0
[2024-05-17 01:12:23] 2024-05-16 23:12:02,916 | INFO     | mean x: 1715869183.0
[2024-05-17 01:12:23] 2024-05-16 23:12:02,916 | INFO     | mean y: 2636442.0086788815
[2024-05-17 01:12:23] 2024-05-16 23:12:02,916 | INFO     | -- intersect: -11746228726.121744
[2024-05-17 01:12:23] 2024-05-16 23:12:02,916 | INFO     | intersect: -11746228726.121744
[2024-05-17 01:12:23] 2024-05-16 23:12:02,917 | INFO     | chi2: 11.195816668699509
[2024-05-17 01:12:23] 2024-05-16 23:12:02,917 | INFO     | current chi2=11.195816668699509 (change=19.17379814562423 %)
[2024-05-17 01:12:23] 2024-05-16 23:12:02,917 | INFO     | right removable region: 1036
[2024-05-17 01:12:23] 2024-05-16 23:12:02,918 | INFO     | model: linear, x: [1715837890.0, 1715837951.0, 1715838012.0, 1715838073.0, 1715838134.0, 1715838195.0, 1715838256.0, 1715838317.0, 1715838378.0, 1715838439.0, 1715
[2024-05-17 01:12:23] 2024-05-16 23:12:02,918 | INFO     | sum of square deviations: 345791480678.0
[2024-05-17 01:12:23] 2024-05-16 23:12:02,934 | INFO     | sum of deviations: 1753829768601.9998
[2024-05-17 01:12:23] 2024-05-16 23:12:02,935 | INFO     | mean x: 1715869488.0
[2024-05-17 01:12:23] 2024-05-16 23:12:02,935 | INFO     | mean y: 2636994.25168756
[2024-05-17 01:12:23] 2024-05-16 23:12:02,935 | INFO     | -- intersect: -8700130873.799297
[2024-05-17 01:12:23] 2024-05-16 23:12:02,935 | INFO     | intersect: -8700130873.799297
[2024-05-17 01:12:23] 2024-05-16 23:12:02,936 | INFO     | chi2: 10.866225291539909
[2024-05-17 01:12:23] 2024-05-16 23:12:02,936 | INFO     | current chi2=10.866225291539909 (change=21.55322431595808 %)
[2024-05-17 01:12:23] 2024-05-16 23:12:02,936 | INFO     | left removable region: 10
[2024-05-17 01:12:23] 2024-05-16 23:12:02,937 | INFO     | model: linear, x: [1715838195.0, 1715838256.0, 1715838317.0, 1715838378.0, 1715838439.0, 1715838500.0, 1715838561.0, 1715838622.0, 1715838683.0, 1715838744.0, 1715
[2024-05-17 01:12:23] 2024-05-16 23:12:02,937 | INFO     | sum of square deviations: 334903814212.5
[2024-05-17 01:12:23] 2024-05-16 23:12:02,953 | INFO     | sum of deviations: 1849584385530.4998
[2024-05-17 01:12:23] 2024-05-16 23:12:02,953 | INFO     | mean x: 1715869457.5
[2024-05-17 01:12:23] 2024-05-16 23:12:02,953 | INFO     | mean y: 2656035.776803119
[2024-05-17 01:12:23] 2024-05-16 23:12:02,953 | INFO     | -- intersect: -9473633040.426365
[2024-05-17 01:12:23] 2024-05-16 23:12:02,953 | INFO     | intersect: -9473633040.426365
[2024-05-17 01:12:23] 2024-05-16 23:12:02,954 | INFO     | chi2: 5.753197646899274
[2024-05-17 01:12:23] 2024-05-16 23:12:02,954 | INFO     | -- intersect: -9473633040.426365
[2024-05-17 01:12:23] 2024-05-16 23:12:02,954 | INFO     | current memory leak: 5.52 B/s (using 1026 data points, chi2=5.75)
[2024-05-17 01:12:23] 2024-05-16 23:12:02,955 | INFO     | ..............................
[2024-05-17 01:12:23] 2024-05-16 23:12:02,955 | INFO     | . Timing measurements:
[2024-05-17 01:12:23] 2024-05-16 23:12:02,955 | INFO     | . get job = 0 s
[2024-05-17 01:12:23] 2024-05-16 23:12:02,955 | INFO     | . initial setup = 1 s
[2024-05-17 01:12:23] 2024-05-16 23:12:02,955 | INFO     | . payload setup = 29 s
[2024-05-17 01:12:23] 2024-05-16 23:12:02,955 | INFO     | . stage-in = 0 s
[2024-05-17 01:12:23] 2024-05-16 23:12:02,955 | INFO     | . payload execution = 63532 s
[2024-05-17 01:12:23] 2024-05-16 23:12:02,955 | INFO     | . stage-out = 2 s
[2024-05-17 01:12:23] 2024-05-16 23:12:02,956 | INFO     | . log creation = 0 s
[2024-05-17 01:12:23] 2024-05-16 23:12:02,956 | INFO     | ..............................
[2024-05-17 01:12:23] 2024-05-16 23:12:03,030 | INFO     | 
[2024-05-17 01:12:23] 2024-05-16 23:12:03,030 | INFO     | job summary report
[2024-05-17 01:12:23] 2024-05-16 23:12:03,030 | INFO     | --------------------------------------------------
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | PanDA job id: 6201836305
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | task id: 38734053
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | errors: (none)
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | pilot state: finished 
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | transexitcode: 0
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | exeerrorcode: 0
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | exeerrordiag: 
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | exitcode: 0
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | exitmsg: OK
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | cpuconsumptiontime: 248254 s
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | nevents: 1950
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | neventsw: 0
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | pid: 3395409
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | pgrp: 3395409
[2024-05-17 01:12:23] 2024-05-16 23:12:03,031 | INFO     | corecount: 4
[2024-05-17 01:12:23] 2024-05-16 23:12:03,032 | INFO     | event service: False
[2024-05-17 01:12:23] 2024-05-16 23:12:03,032 | INFO     | sizes: {0: 2392431, 1: 2392630, 11: 2392630, 12: 2392864, 22: 2392892, 63565: 2465880, 63567: 2474920, 63572: 2475086}
[2024-05-17 01:12:23] 2024-05-16 23:12:03,032 | INFO     | --------------------------------------------------
[2024-05-17 01:12:23] 2024-05-16 23:12:03,032 | INFO     | 
[2024-05-17 01:12:23] 2024-05-16 23:12:03,032 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/1
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,053 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,054 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,054 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,054 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,054 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,054 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 01:12:23] 2024-05-16 23:12:03,054 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,054 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 01:12:23] 2024-05-16 23:12:03,054 | INFO     | job 6201836305 has completed (purged errors)
[2024-05-17 01:12:23] 2024-05-16 23:12:03,054 | INFO     | overall cleanup function is called
[2024-05-17 01:12:23] 2024-05-16 23:12:04,064 | INFO     | --- collectZombieJob: --- 10, [3395409]
[2024-05-17 01:12:23] 2024-05-16 23:12:04,064 | INFO     | zombie collector waiting for pid 3395409
[2024-05-17 01:12:23] 2024-05-16 23:12:04,064 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 01:12:23] 2024-05-16 23:12:05,067 | INFO     | collected zombie processes
[2024-05-17 01:12:23] 2024-05-16 23:12:05,067 | INFO     | will now attempt to kill all subprocesses of pid=3395409
[2024-05-17 01:12:23] 2024-05-16 23:12:05,223 | INFO     | process IDs to be killed: [3395409] (in reverse order)
[2024-05-17 01:12:23] 2024-05-16 23:12:05,369 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 01:12:23] 2024-05-16 23:12:05,370 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 01:12:23] 2024-05-16 23:12:05,389 | INFO     | did not find any defunct processes belonging to 3395409
[2024-05-17 01:12:23] 2024-05-16 23:12:05,405 | INFO     | did not find any defunct processes belonging to 3395409
[2024-05-17 01:12:23] 2024-05-16 23:12:05,405 | INFO     | ready for new job
[2024-05-17 01:12:23] 2024-05-16 23:12:05,405 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 01:12:23] 2024-05-16 23:12:05,411 | INFO     | *************************************
[2024-05-17 01:12:23] 2024-05-16 23:12:05,411 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 01:12:23] 2024-05-16 23:12:05,411 | INFO     | *************************************
[2024-05-17 01:12:23] 2024-05-16 23:12:05,411 | INFO     | 
[2024-05-17 01:12:23] 2024-05-16 23:12:05,420 | INFO     | architecture information:
[2024-05-17 01:12:23] 2024-05-16 23:12:05,421 | INFO     | executing command: cat /etc/os-release
[2024-05-17 01:12:23] 2024-05-16 23:12:05,434 | INFO     | cat /etc/os-release:
[2024-05-17 01:12:23] NAME="CentOS Linux"
[2024-05-17 01:12:23] VERSION="7 (Core)"
[2024-05-17 01:12:23] ID="centos"
[2024-05-17 01:12:23] ID_LIKE="rhel fedora"
[2024-05-17 01:12:23] VERSION_ID="7"
[2024-05-17 01:12:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 01:12:23] ANSI_COLOR="0;31"
[2024-05-17 01:12:23] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 01:12:23] HOME_URL="https://www.centos.org/"
[2024-05-17 01:12:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 01:12:23] 
[2024-05-17 01:12:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 01:12:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 01:12:23] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 01:12:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 01:12:23] 
[2024-05-17 01:12:23] 2024-05-16 23:12:05,434 | INFO     | *************************************
[2024-05-17 01:12:23] 2024-05-16 23:12:05,937 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/1
[2024-05-17 01:12:23] 2024-05-16 23:12:05,956 | INFO     | sufficient remaining disk space (2981951963136 B)
[2024-05-17 01:12:23] 2024-05-16 23:12:05,956 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 01:12:23] 2024-05-16 23:12:05,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 01:12:23] 2024-05-16 23:12:05,957 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 01:12:23] 2024-05-16 23:12:05,957 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 01:12:23] 2024-05-16 23:12:05,957 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 01:12:23] 2024-05-16 23:12:05,957 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 01:12:23] 2024-05-16 23:12:06,081 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 01:12:23] 2024-05-16 23:12:06,082 | INFO     | aborting loop
[2024-05-17 01:12:23] 2024-05-16 23:12:06,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 01:12:23] 2024-05-16 23:12:06,394 | INFO     | all data control threads have been joined
[2024-05-17 01:12:23] 2024-05-16 23:12:06,701 | INFO     | all payload control threads have been joined
[2024-05-17 01:12:23] 2024-05-16 23:12:06,796 | INFO     | all job control threads have been joined
[2024-05-17 01:12:23] 2024-05-16 23:12:06,962 | INFO     | [job] retrieve thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:07,087 | INFO     | [job] job monitor thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:07,201 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:07,333 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:07,399 | INFO     | [data] control thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:07,523 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:07,706 | INFO     | [payload] control thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:07,760 | INFO     | [payload] failed_post thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:07,802 | INFO     | [job] control thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:08,002 | INFO     | [payload] validate_post thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:08,021 | INFO     | [job] validate thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:08,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 01:12:23] 2024-05-16 23:12:08,187 | INFO     | [data] copytool_out thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:08,202 | INFO     | [data] copytool_in thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:09,047 | INFO     | [job] queue monitor thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:09,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 01:12:23] 2024-05-16 23:12:13,054 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:16,250 | INFO     | job.realtimelogging is not enabled
[2024-05-17 01:12:23] 2024-05-16 23:12:17,256 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 01:12:23] 2024-05-16 23:12:17,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47352613598272)>', '<ExcThread(monitor, started 47352784848640)>']
[2024-05-17 01:12:23] 2024-05-16 23:12:18,018 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 01:12:23] 2024-05-16 23:12:18,019 | INFO     | [monitor] control thread has ended
[2024-05-17 01:12:23] 2024-05-16 23:12:22,370 | INFO     | all workflow threads have been joined
[2024-05-17 01:12:23] 2024-05-16 23:12:22,371 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 01:12:23] 2024-05-16 23:12:22,371 | INFO     | traces error code: 0
[2024-05-17 01:12:23] 2024-05-16 23:12:22,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 01:12:23] 2024-05-16 23:12:22,453 [wrapper] ==== pilot stdout END ====
[2024-05-17 01:12:23] 2024-05-16 23:12:22,455 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 01:12:23] 2024-05-16 23:12:22,457 [wrapper] pilotpid: 3385420
[2024-05-17 01:12:23] 2024-05-16 23:12:22,460 [wrapper] Pilot exit status: 0
[2024-05-17 01:12:23] 2024-05-16 23:12:22,469 [wrapper] pandaids: 6201836305
[2024-05-17 01:12:23] 2024-05-16 23:12:22,551 [wrapper] cleanup: SIGTERM to supervisor_pilot 1023252 3385421
[2024-05-17 01:12:23] 2024-05-16 23:12:22,553 [wrapper] Test setup, not cleaning
[2024-05-17 01:12:23] 2024-05-16 23:12:22,556 [wrapper] ==== wrapper stdout END ====
[2024-05-17 01:12:23] 2024-05-16 23:12:22,558 [wrapper] ==== wrapper stderr END ====
[2024-05-17 01:12:23] 2024-05-16 23:12:22,563 [wrapper] apfmon messages muted
[2024-05-17 01:12:23]  *** Error codes and diagnostics ***
[2024-05-17 01:12:23]     "exeErrorCode": 0,
[2024-05-17 01:12:23]     "exeErrorDiag": "",
[2024-05-17 01:12:23]     "pilotErrorCode": 0,
[2024-05-17 01:12:23]     "pilotErrorDiag": "",
[2024-05-17 01:12:23]  *** Listing of results directory ***
[2024-05-17 01:12:23] total 1509460
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc     467845 May 10 21:06 pilot3.tar.gz
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc       5633 May 10 21:16 queuedata.json
[2024-05-17 01:12:23] -rwx------ 1 boinc boinc      32251 May 10 21:19 runpilot2-wrapper.sh
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc        100 May 16 07:31 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 01:12:23] -rwxr-xr-x 1 boinc boinc       7986 May 16 07:31 run_atlas
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc        105 May 16 07:31 job.xml
[2024-05-17 01:12:23] -rw-r--r-- 2 boinc boinc  329147385 May 16 07:31 EVNT.38734051._000975.pool.root.1
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc       6644 May 16 07:31 init_data.xml
[2024-05-17 01:12:23] -rw-r--r-- 2 boinc boinc      17537 May 16 07:31 start_atlas.sh
[2024-05-17 01:12:23] drwxrwx--x 2 boinc boinc       4096 May 16 07:31 shared
[2024-05-17 01:12:23] -rw-r--r-- 2 boinc boinc     480170 May 16 07:31 input.tar.gz
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc          0 May 16 07:31 boinc_lockfile
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc       2853 May 16 07:31 pandaJob.out
[2024-05-17 01:12:23] -rw------- 1 boinc boinc        424 May 16 07:31 setup.sh.local
[2024-05-17 01:12:23] -rw------- 1 boinc boinc    1010627 May 16 07:31 agis_schedconf.cvmfs.json
[2024-05-17 01:12:23] -rw------- 1 boinc boinc    1324701 May 16 07:31 cric_ddmendpoints.json
[2024-05-17 01:12:23] drwx------ 4 boinc boinc       4096 May 16 07:32 pilot3
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc        533 May 17 01:04 boinc_task_state.xml
[2024-05-17 01:12:23] -rw------- 1 boinc boinc         95 May 17 01:11 pilot_heartbeat.json
[2024-05-17 01:12:23] -rw------- 1 boinc boinc 1188550946 May 17 01:11 HITS.38734053._005453.pool.root.1
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc       8192 May 17 01:11 boinc_mmap_file
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc         29 May 17 01:11 wrapper_checkpoint.txt
[2024-05-17 01:12:23] -rw------- 1 boinc boinc       1054 May 17 01:11 memory_monitor_summary.json
[2024-05-17 01:12:23] -rw------- 1 boinc boinc          0 May 17 01:11 agis_ddmendpoints.agis.ALL.json
[2024-05-17 01:12:23] -rw------- 1 boinc boinc    1941935 May 17 01:11 log.38734053._005453.job.log.tgz.1
[2024-05-17 01:12:23] -rw------- 1 boinc boinc      27572 May 17 01:12 heartbeat.json
[2024-05-17 01:12:23] -rw------- 1 boinc boinc       4418 May 17 01:12 pilotlog.txt
[2024-05-17 01:12:23] -rw------- 1 boinc boinc   10270057 May 17 01:12 log.38734053._005453.job.log.1
[2024-05-17 01:12:23] -rw------- 1 boinc boinc        353 May 17 01:12 output.list
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc        620 May 17 01:12 runtime_log
[2024-05-17 01:12:23] -rw------- 1 boinc boinc   12247040 May 17 01:12 result.tar.gz
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc      11429 May 17 01:12 runtime_log.err
[2024-05-17 01:12:23] -rw------- 1 boinc boinc        666 May 17 01:12 be4NDmBxkP5nsSi4apGgGQJmABFKDmABFKDm4ySLDmg6IKDmlzTgSm.diag
[2024-05-17 01:12:23] -rw-r--r-- 1 boinc boinc      21715 May 17 01:12 stderr.txt
[2024-05-17 01:12:23] HITS file was successfully produced:
[2024-05-17 01:12:23] -rw------- 1 boinc boinc 1188550946 May 17 01:11 shared/HITS.pool.root.1
[2024-05-17 01:12:23]  *** Contents of shared directory: ***
[2024-05-17 01:12:23] total 1494592
[2024-05-17 01:12:23] -rw-r--r-- 2 boinc boinc  329147385 May 16 07:31 ATLAS.root_0
[2024-05-17 01:12:23] -rw-r--r-- 2 boinc boinc      17537 May 16 07:31 start_atlas.sh
[2024-05-17 01:12:23] -rw-r--r-- 2 boinc boinc     480170 May 16 07:31 input.tar.gz
[2024-05-17 01:12:23] -rw------- 1 boinc boinc 1188550946 May 17 01:11 HITS.pool.root.1
[2024-05-17 01:12:23] -rw------- 1 boinc boinc   12247040 May 17 01:12 result.tar.gz
01:12:24 (3378004): run_atlas exited; CPU time 246466.666008
01:12:24 (3378004): called boinc_finish(0)

</stderr_txt>
]]>

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