Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:30:27 (2095343): wrapper (7.7.26015): starting
04:30:27 (2095343): wrapper: running run_atlas (--nthreads 4)
[2024-05-17 04:30:27] Arguments: --nthreads 4
[2024-05-17 04:30:27] Threads: 4
[2024-05-17 04:30:27] Checking for CVMFS
[2024-05-17 04:30:27] No cvmfs_config command found, will try listing directly
[2024-05-17 04:30:27] CVMFS is ok
[2024-05-17 04:30:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 04:30:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 04:30:27] Further information can be found at the LHC@home message board.
[2024-05-17 04:30:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 04:30:27] Checking for apptainer binary...
[2024-05-17 04:30:27] which: no apptainer in ((null))
[2024-05-17 04:30:27] apptainer is not installed, using version from CVMFS
[2024-05-17 04:30:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 04:30:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2024-05-17 04:30:28] apptainer works
[2024-05-17 04:30:28] Set ATHENA_PROC_NUMBER=4
[2024-05-17 04:30:28] Set ATHENA_CORE_NUMBER=4
[2024-05-17 04:30:28] Starting ATLAS job with PandaID=6201810551
[2024-05-17 04:30:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 23:45:09]  *** The last 200 lines of the pilot log: ***
[2024-05-17 23:45:09] 2024-05-17 21:44:43,924 | INFO     | job 6201810551 has state=finished
[2024-05-17 23:45:09] 2024-05-17 21:44:43,924 | INFO     | preparing for final server update for job 6201810551 in state='finished'
[2024-05-17 23:45:09] 2024-05-17 21:44:43,925 | INFO     | this job has now completed (state=finished)
[2024-05-17 23:45:09] 2024-05-17 21:44:43,925 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 23:45:09] 2024-05-17 21:44:43,925 | INFO     | job 6201810551 has finished - writing final server update
[2024-05-17 23:45:09] 2024-05-17 21:44:43,925 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2044521/.job.ad'
[2024-05-17 23:45:09] 2024-05-17 21:44:43,925 | INFO     | total number of processed events: 1950 (read)
[2024-05-17 23:45:09] 2024-05-17 21:44:43,927 | INFO     | executing command: lscpu
[2024-05-17 23:45:09] 2024-05-17 21:44:43,955 | INFO     | found 20 cores (10 cores per socket, 2 sockets)
[2024-05-17 23:45:09] 2024-05-17 21:44:43,955 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 23:45:09] 2024-05-17 21:44:43,976 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 23:45:09] 2024-05-17 21:44:45,854 | INFO     | monitor loop #5362: job 0:6201810551 is in state 'finished'
[2024-05-17 23:45:09] 2024-05-17 21:44:45,854 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 23:45:09] 2024-05-17 21:44:47,476 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-17 23:45:09] 2024-05-17 21:44:47,476 | INFO     | using path: /scratch/boinc/var/slot40/slots/1/PanDA_Pilot-6201810551/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 23:45:09] 2024-05-17 21:44:47,477 | INFO     | extracted standard info from prmon json
[2024-05-17 23:45:09] 2024-05-17 21:44:47,477 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 23:45:09] 2024-05-17 21:44:47,477 | WARNING  | GPU info not found in prmon json
[2024-05-17 23:45:09] 2024-05-17 21:44:47,497 | INFO     | fitting pss+swap vs Time
[2024-05-17 23:45:09] 2024-05-17 21:44:47,499 | INFO     | model: linear, x: [1715913061.0, 1715913122.0, 1715913183.0, 1715913244.0, 1715913305.0, 1715913366.0, 1715913427.0, 1715913488.0, 1715913549.0, 1715913610.0, 1715
[2024-05-17 23:45:09] 2024-05-17 21:44:47,499 | INFO     | sum of square deviations: 453383458920.0
[2024-05-17 23:45:09] 2024-05-17 21:44:47,527 | INFO     | sum of deviations: 2222527559708.0
[2024-05-17 23:45:09] 2024-05-17 21:44:47,527 | INFO     | mean x: 1715947648.0
[2024-05-17 23:45:09] 2024-05-17 21:44:47,527 | INFO     | mean y: 2728310.216740088
[2024-05-17 23:45:09] 2024-05-17 21:44:47,528 | INFO     | -- intersect: -8409005430.093934
[2024-05-17 23:45:09] 2024-05-17 21:44:47,528 | INFO     | intersect: -8409005430.093934
[2024-05-17 23:45:09] 2024-05-17 21:44:47,528 | INFO     | chi2: 15.443446654523704
[2024-05-17 23:45:09] 2024-05-17 21:44:47,529 | INFO     | model: linear, x: [1715913061.0, 1715913122.0, 1715913183.0, 1715913244.0, 1715913305.0, 1715913366.0, 1715913427.0, 1715913488.0, 1715913549.0, 1715913610.0, 1715
[2024-05-17 23:45:09] 2024-05-17 21:44:47,530 | INFO     | sum of square deviations: 447417961022.5
[2024-05-17 23:45:09] 2024-05-17 21:44:47,547 | INFO     | sum of deviations: 2560306809884.9995
[2024-05-17 23:45:09] 2024-05-17 21:44:47,547 | INFO     | mean x: 1715947495.5
[2024-05-17 23:45:09] 2024-05-17 21:44:47,547 | INFO     | mean y: 2736945.877876106
[2024-05-17 23:45:09] 2024-05-17 21:44:47,547 | INFO     | -- intersect: -9816609707.290623
[2024-05-17 23:45:09] 2024-05-17 21:44:47,547 | INFO     | intersect: -9816609707.290623
[2024-05-17 23:45:09] 2024-05-17 21:44:47,548 | INFO     | chi2: 12.78408622308306
[2024-05-17 23:45:09] 2024-05-17 21:44:47,548 | INFO     | current chi2=12.78408622308306 (change=17.219992990759373 %)
[2024-05-17 23:45:09] 2024-05-17 21:44:47,548 | INFO     | right removable region: 1129
[2024-05-17 23:45:09] 2024-05-17 21:44:47,549 | INFO     | model: linear, x: [1715913366.0, 1715913427.0, 1715913488.0, 1715913549.0, 1715913610.0, 1715913671.0, 1715913732.0, 1715913793.0, 1715913854.0, 1715913915.0, 1715
[2024-05-17 23:45:09] 2024-05-17 21:44:47,549 | INFO     | sum of square deviations: 447417961022.5
[2024-05-17 23:45:09] 2024-05-17 21:44:47,566 | INFO     | sum of deviations: 1851790309711.9998
[2024-05-17 23:45:09] 2024-05-17 21:44:47,566 | INFO     | mean x: 1715947800.5
[2024-05-17 23:45:09] 2024-05-17 21:44:47,566 | INFO     | mean y: 2737784.9115044246
[2024-05-17 23:45:09] 2024-05-17 21:44:47,567 | INFO     | -- intersect: -7099291605.405537
[2024-05-17 23:45:09] 2024-05-17 21:44:47,567 | INFO     | intersect: -7099291605.405537
[2024-05-17 23:45:09] 2024-05-17 21:44:47,567 | INFO     | chi2: 12.228285363768151
[2024-05-17 23:45:09] 2024-05-17 21:44:47,568 | INFO     | current chi2=12.228285363768151 (change=20.818936100729598 %)
[2024-05-17 23:45:09] 2024-05-17 21:44:47,568 | INFO     | left removable region: 10
[2024-05-17 23:45:09] 2024-05-17 21:44:47,568 | INFO     | model: linear, x: [1715913671.0, 1715913732.0, 1715913793.0, 1715913854.0, 1715913915.0, 1715913976.0, 1715914037.0, 1715914098.0, 1715914159.0, 1715914220.0, 1715
[2024-05-17 23:45:09] 2024-05-17 21:44:47,569 | INFO     | sum of square deviations: 434478546320.0
[2024-05-17 23:45:09] 2024-05-17 21:44:47,585 | INFO     | sum of deviations: 1948448733781.0002
[2024-05-17 23:45:09] 2024-05-17 21:44:47,586 | INFO     | mean x: 1715947770.0
[2024-05-17 23:45:09] 2024-05-17 21:44:47,586 | INFO     | mean y: 2756761.412868633
[2024-05-17 23:45:09] 2024-05-17 21:44:47,586 | INFO     | -- intersect: -7692528283.175593
[2024-05-17 23:45:09] 2024-05-17 21:44:47,586 | INFO     | intersect: -7692528283.175593
[2024-05-17 23:45:09] 2024-05-17 21:44:47,587 | INFO     | chi2: 6.6223447436557334
[2024-05-17 23:45:09] 2024-05-17 21:44:47,587 | INFO     | -- intersect: -7692528283.175593
[2024-05-17 23:45:09] 2024-05-17 21:44:47,587 | INFO     | current memory leak: 4.48 B/s (using 1119 data points, chi2=6.62)
[2024-05-17 23:45:09] 2024-05-17 21:44:47,588 | INFO     | ..............................
[2024-05-17 23:45:09] 2024-05-17 21:44:47,588 | INFO     | . Timing measurements:
[2024-05-17 23:45:09] 2024-05-17 21:44:47,588 | INFO     | . get job = 0 s
[2024-05-17 23:45:09] 2024-05-17 21:44:47,588 | INFO     | . initial setup = 1 s
[2024-05-17 23:45:09] 2024-05-17 21:44:47,588 | INFO     | . payload setup = 7 s
[2024-05-17 23:45:09] 2024-05-17 21:44:47,588 | INFO     | . stage-in = 0 s
[2024-05-17 23:45:09] 2024-05-17 21:44:47,588 | INFO     | . payload execution = 69215 s
[2024-05-17 23:45:09] 2024-05-17 21:44:47,588 | INFO     | . stage-out = 2 s
[2024-05-17 23:45:09] 2024-05-17 21:44:47,588 | INFO     | . log creation = 0 s
[2024-05-17 23:45:09] 2024-05-17 21:44:47,588 | INFO     | ..............................
[2024-05-17 23:45:09] 2024-05-17 21:44:47,786 | INFO     | 
[2024-05-17 23:45:09] 2024-05-17 21:44:47,787 | INFO     | job summary report
[2024-05-17 23:45:09] 2024-05-17 21:44:47,787 | INFO     | --------------------------------------------------
[2024-05-17 23:45:09] 2024-05-17 21:44:47,787 | INFO     | PanDA job id: 6201810551
[2024-05-17 23:45:09] 2024-05-17 21:44:47,787 | INFO     | task id: 38734053
[2024-05-17 23:45:09] 2024-05-17 21:44:47,787 | INFO     | errors: (none)
[2024-05-17 23:45:09] 2024-05-17 21:44:47,787 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 23:45:09] 2024-05-17 21:44:47,787 | INFO     | pilot state: finished 
[2024-05-17 23:45:09] 2024-05-17 21:44:47,787 | INFO     | transexitcode: 0
[2024-05-17 23:45:09] 2024-05-17 21:44:47,787 | INFO     | exeerrorcode: 0
[2024-05-17 23:45:09] 2024-05-17 21:44:47,788 | INFO     | exeerrordiag: 
[2024-05-17 23:45:09] 2024-05-17 21:44:47,788 | INFO     | exitcode: 0
[2024-05-17 23:45:09] 2024-05-17 21:44:47,788 | INFO     | exitmsg: OK
[2024-05-17 23:45:09] 2024-05-17 21:44:47,788 | INFO     | cpuconsumptiontime: 270825 s
[2024-05-17 23:45:09] 2024-05-17 21:44:47,788 | INFO     | nevents: 1950
[2024-05-17 23:45:09] 2024-05-17 21:44:47,788 | INFO     | neventsw: 0
[2024-05-17 23:45:09] 2024-05-17 21:44:47,788 | INFO     | pid: 2107117
[2024-05-17 23:45:09] 2024-05-17 21:44:47,788 | INFO     | pgrp: 2107117
[2024-05-17 23:45:09] 2024-05-17 21:44:47,788 | INFO     | corecount: 4
[2024-05-17 23:45:09] 2024-05-17 21:44:47,788 | INFO     | event service: False
[2024-05-17 23:45:09] 2024-05-17 21:44:47,789 | INFO     | sizes: {0: 2392650, 3: 2392856, 11: 2392884, 69226: 2469402, 69228: 2478384, 69231: 2478440, 69237: 2478790}
[2024-05-17 23:45:09] 2024-05-17 21:44:47,789 | INFO     | --------------------------------------------------
[2024-05-17 23:45:09] 2024-05-17 21:44:47,789 | INFO     | 
[2024-05-17 23:45:09] 2024-05-17 21:44:47,789 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/1
[2024-05-17 23:45:09] 2024-05-17 21:44:47,804 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,805 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,805 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,805 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,805 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,805 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,805 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,805 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,805 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,805 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,806 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,806 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,806 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,806 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,806 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,806 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,806 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,806 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 23:45:09] 2024-05-17 21:44:47,806 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,806 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 23:45:09] 2024-05-17 21:44:47,807 | INFO     | job 6201810551 has completed (purged errors)
[2024-05-17 23:45:09] 2024-05-17 21:44:47,807 | INFO     | overall cleanup function is called
[2024-05-17 23:45:09] 2024-05-17 21:44:48,828 | INFO     | --- collectZombieJob: --- 10, [2107117]
[2024-05-17 23:45:09] 2024-05-17 21:44:48,828 | INFO     | zombie collector waiting for pid 2107117
[2024-05-17 23:45:09] 2024-05-17 21:44:48,828 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 23:45:09] 2024-05-17 21:44:49,831 | INFO     | collected zombie processes
[2024-05-17 23:45:09] 2024-05-17 21:44:49,831 | INFO     | will now attempt to kill all subprocesses of pid=2107117
[2024-05-17 23:45:09] 2024-05-17 21:44:49,926 | INFO     | process IDs to be killed: [2107117] (in reverse order)
[2024-05-17 23:45:09] 2024-05-17 21:44:49,991 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 23:45:09] 2024-05-17 21:44:49,992 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 23:45:09] 2024-05-17 21:44:49,996 | INFO     | did not find any defunct processes belonging to 2107117
[2024-05-17 23:45:09] 2024-05-17 21:44:50,000 | INFO     | did not find any defunct processes belonging to 2107117
[2024-05-17 23:45:09] 2024-05-17 21:44:50,000 | INFO     | ready for new job
[2024-05-17 23:45:09] 2024-05-17 21:44:50,001 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 23:45:09] 2024-05-17 21:44:50,005 | INFO     | *************************************
[2024-05-17 23:45:09] 2024-05-17 21:44:50,005 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 23:45:09] 2024-05-17 21:44:50,005 | INFO     | *************************************
[2024-05-17 23:45:09] 2024-05-17 21:44:50,005 | INFO     | 
[2024-05-17 23:45:09] 2024-05-17 21:44:50,007 | INFO     | architecture information:
[2024-05-17 23:45:09] 2024-05-17 21:44:50,007 | INFO     | executing command: cat /etc/os-release
[2024-05-17 23:45:09] 2024-05-17 21:44:50,017 | INFO     | cat /etc/os-release:
[2024-05-17 23:45:09] NAME="CentOS Linux"
[2024-05-17 23:45:09] VERSION="7 (Core)"
[2024-05-17 23:45:09] ID="centos"
[2024-05-17 23:45:09] ID_LIKE="rhel fedora"
[2024-05-17 23:45:09] VERSION_ID="7"
[2024-05-17 23:45:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 23:45:09] ANSI_COLOR="0;31"
[2024-05-17 23:45:09] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 23:45:09] HOME_URL="https://www.centos.org/"
[2024-05-17 23:45:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 23:45:09] 
[2024-05-17 23:45:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 23:45:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 23:45:09] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 23:45:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 23:45:09] 
[2024-05-17 23:45:09] 2024-05-17 21:44:50,017 | INFO     | *************************************
[2024-05-17 23:45:09] 2024-05-17 21:44:50,520 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/1
[2024-05-17 23:45:09] 2024-05-17 21:44:50,535 | INFO     | sufficient remaining disk space (1617193598976 B)
[2024-05-17 23:45:09] 2024-05-17 21:44:50,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 23:45:09] 2024-05-17 21:44:50,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 23:45:09] 2024-05-17 21:44:50,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 23:45:09] 2024-05-17 21:44:50,864 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-17 23:45:09] 2024-05-17 21:44:50,865 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-17 23:45:09] 2024-05-17 21:44:50,865 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 23:45:09] 2024-05-17 21:44:50,865 | INFO     | will abort loop
[2024-05-17 23:45:09] 2024-05-17 21:44:50,950 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 23:45:09] 2024-05-17 21:44:50,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 23:45:09] 2024-05-17 21:44:50,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 23:45:09] 2024-05-17 21:44:50,990 | INFO     | all job control threads have been joined
[2024-05-17 23:45:09] 2024-05-17 21:44:51,085 | INFO     | all data control threads have been joined
[2024-05-17 23:45:09] 2024-05-17 21:44:51,535 | INFO     | all payload control threads have been joined
[2024-05-17 23:45:09] 2024-05-17 21:44:51,541 | INFO     | [job] retrieve thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:51,621 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:51,645 | INFO     | [job] validate thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:51,674 | INFO     | [payload] failed_post thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:51,787 | INFO     | [payload] validate_post thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:51,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 23:45:09] 2024-05-17 21:44:51,871 | INFO     | [job] job monitor thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:51,996 | INFO     | [job] control thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:52,091 | INFO     | [data] control thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:52,195 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:52,293 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:52,540 | INFO     | [payload] control thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:52,541 | INFO     | [data] copytool_out thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:52,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 23:45:09] 2024-05-17 21:44:52,704 | INFO     | [data] copytool_in thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:53,660 | INFO     | [job] queue monitor thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:44:55,798 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:45:00,940 | INFO     | job.realtimelogging is not enabled
[2024-05-17 23:45:09] 2024-05-17 21:45:01,945 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 23:45:09] 2024-05-17 21:45:03,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47766999921728)>', '<ExcThread(monitor, started 47767173273344)>']
[2024-05-17 23:45:09] 2024-05-17 21:45:04,013 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 23:45:09] 2024-05-17 21:45:04,013 | INFO     | [monitor] control thread has ended
[2024-05-17 23:45:09] 2024-05-17 21:45:09,010 | INFO     | all workflow threads have been joined
[2024-05-17 23:45:09] 2024-05-17 21:45:09,010 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 23:45:09] 2024-05-17 21:45:09,011 | INFO     | traces error code: 0
[2024-05-17 23:45:09] 2024-05-17 21:45:09,011 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 23:45:09] 2024-05-17 21:45:09,107 [wrapper] ==== pilot stdout END ====
[2024-05-17 23:45:09] 2024-05-17 21:45:09,109 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 23:45:09] 2024-05-17 21:45:09,110 [wrapper] pilotpid: 2099621
[2024-05-17 23:45:09] 2024-05-17 21:45:09,112 [wrapper] Pilot exit status: 0
[2024-05-17 23:45:09] 2024-05-17 21:45:09,118 [wrapper] pandaids: 6201810551
[2024-05-17 23:45:09] 2024-05-17 21:45:09,161 [wrapper] cleanup: SIGTERM to supervisor_pilot 3696484 2099622
[2024-05-17 23:45:09] 2024-05-17 21:45:09,163 [wrapper] Test setup, not cleaning
[2024-05-17 23:45:09] 2024-05-17 21:45:09,165 [wrapper] ==== wrapper stdout END ====
[2024-05-17 23:45:09] 2024-05-17 21:45:09,167 [wrapper] ==== wrapper stderr END ====
[2024-05-17 23:45:09] 2024-05-17 21:45:09,171 [wrapper] apfmon messages muted
[2024-05-17 23:45:09]  *** Error codes and diagnostics ***
[2024-05-17 23:45:09]     "exeErrorCode": 0,
[2024-05-17 23:45:09]     "exeErrorDiag": "",
[2024-05-17 23:45:09]     "pilotErrorCode": 0,
[2024-05-17 23:45:09]     "pilotErrorDiag": "",
[2024-05-17 23:45:09]  *** Listing of results directory ***
[2024-05-17 23:45:09] total 1527204
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc     467845 May 10 20:00 pilot3.tar.gz
[2024-05-17 23:45:09] -rwx------ 1 boinc boinc      32251 May 10 20:30 runpilot2-wrapper.sh
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc       5633 May 10 20:30 queuedata.json
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc        100 May 17 04:30 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 23:45:09] -rwxr-xr-x 1 boinc boinc       7986 May 17 04:30 run_atlas
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc        105 May 17 04:30 job.xml
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc       6457 May 17 04:30 init_data.xml
[2024-05-17 23:45:09] -rw-r--r-- 2 boinc boinc  328899818 May 17 04:30 EVNT.38734051._000799.pool.root.1
[2024-05-17 23:45:09] drwxrwx--x 2 boinc boinc       4096 May 17 04:30 shared
[2024-05-17 23:45:09] -rw-r--r-- 2 boinc boinc     480175 May 17 04:30 input.tar.gz
[2024-05-17 23:45:09] -rw-r--r-- 2 boinc boinc      17537 May 17 04:30 start_atlas.sh
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc          0 May 17 04:30 boinc_lockfile
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc       2852 May 17 04:30 pandaJob.out
[2024-05-17 23:45:09] -rw------- 1 boinc boinc        424 May 17 04:30 setup.sh.local
[2024-05-17 23:45:09] -rw------- 1 boinc boinc    1019310 May 17 04:30 agis_schedconf.cvmfs.json
[2024-05-17 23:45:09] -rw------- 1 boinc boinc    1324701 May 17 04:30 cric_ddmendpoints.json
[2024-05-17 23:45:09] drwx------ 4 boinc boinc       4096 May 17 04:30 pilot3
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc        533 May 17 23:35 boinc_task_state.xml
[2024-05-17 23:45:09] -rw------- 1 boinc boinc 1203122336 May 17 23:44 HITS.38734053._005316.pool.root.1
[2024-05-17 23:45:09] -rw------- 1 boinc boinc       1062 May 17 23:44 memory_monitor_summary.json
[2024-05-17 23:45:09] -rw------- 1 boinc boinc         95 May 17 23:44 pilot_heartbeat.json
[2024-05-17 23:45:09] -rw------- 1 boinc boinc          0 May 17 23:44 agis_ddmendpoints.agis.ALL.json
[2024-05-17 23:45:09] -rw------- 1 boinc boinc    2063842 May 17 23:44 log.38734053._005316.job.log.tgz.1
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc         29 May 17 23:44 wrapper_checkpoint.txt
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc       8192 May 17 23:44 boinc_mmap_file
[2024-05-17 23:45:09] -rw------- 1 boinc boinc      27401 May 17 23:44 heartbeat.json
[2024-05-17 23:45:09] -rw------- 1 boinc boinc       4480 May 17 23:45 pilotlog.txt
[2024-05-17 23:45:09] -rw------- 1 boinc boinc   12070071 May 17 23:45 log.38734053._005316.job.log.1
[2024-05-17 23:45:09] -rw------- 1 boinc boinc        353 May 17 23:45 output.list
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc        620 May 17 23:45 runtime_log
[2024-05-17 23:45:09] -rw------- 1 boinc boinc   14172160 May 17 23:45 result.tar.gz
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc      11410 May 17 23:45 runtime_log.err
[2024-05-17 23:45:09] -rw------- 1 boinc boinc        666 May 17 23:45 W3dMDm5BkP5nsSi4apGgGQJmABFKDmABFKDm4ySLDmg4IKDmMs46mn.diag
[2024-05-17 23:45:09] -rw-r--r-- 1 boinc boinc      21619 May 17 23:45 stderr.txt
[2024-05-17 23:45:09] HITS file was successfully produced:
[2024-05-17 23:45:09] -rw------- 1 boinc boinc 1203122336 May 17 23:44 shared/HITS.pool.root.1
[2024-05-17 23:45:09]  *** Contents of shared directory: ***
[2024-05-17 23:45:09] total 1510456
[2024-05-17 23:45:09] -rw-r--r-- 2 boinc boinc  328899818 May 17 04:30 ATLAS.root_0
[2024-05-17 23:45:09] -rw-r--r-- 2 boinc boinc     480175 May 17 04:30 input.tar.gz
[2024-05-17 23:45:09] -rw-r--r-- 2 boinc boinc      17537 May 17 04:30 start_atlas.sh
[2024-05-17 23:45:09] -rw------- 1 boinc boinc 1203122336 May 17 23:44 HITS.pool.root.1
[2024-05-17 23:45:09] -rw------- 1 boinc boinc   14172160 May 17 23:45 result.tar.gz
23:45:11 (2095343): run_atlas exited; CPU time 267973.280119
23:45:11 (2095343): called boinc_finish(0)

</stderr_txt>
]]>

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