Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:47:10 (3279008): wrapper (7.7.26015): starting
19:47:10 (3279008): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 19:47:10] Arguments: --nthreads 4
[2024-05-15 19:47:10] Threads: 4
[2024-05-15 19:47:10] Checking for CVMFS
[2024-05-15 19:47:10] No cvmfs_config command found, will try listing directly
[2024-05-15 19:47:10] CVMFS is ok
[2024-05-15 19:47:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 19:47:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 19:47:10] Further information can be found at the LHC@home message board.
[2024-05-15 19:47:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 19:47:10] Checking for apptainer binary...
[2024-05-15 19:47:10] which: no apptainer in ((null))
[2024-05-15 19:47:10] apptainer is not installed, using version from CVMFS
[2024-05-15 19:47:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 19:47:11] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2024-05-15 19:47:11] apptainer works
[2024-05-15 19:47:11] Set ATHENA_PROC_NUMBER=4
[2024-05-15 19:47:11] Set ATHENA_CORE_NUMBER=4
[2024-05-15 19:47:11] Starting ATLAS job with PandaID=6201810011
[2024-05-15 19:47:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 23:45:29]  *** The last 200 lines of the pilot log: ***
[2024-05-15 23:45:29] 2024-05-15 21:45:09,322 | INFO     | fitting pss+swap vs Time
[2024-05-15 23:45:29] 2024-05-15 21:45:09,323 | INFO     | model: linear, x: [1715795261.0, 1715795322.0, 1715795383.0, 1715795444.0, 1715795505.0, 1715795566.0, 1715795627.0, 1715795688.0, 1715795749.0, 1715795810.0, 1715
[2024-05-15 23:45:29] 2024-05-15 21:45:09,323 | INFO     | sum of square deviations: 3972995422.5
[2024-05-15 23:45:29] 2024-05-15 21:45:09,324 | INFO     | sum of deviations: 65000892064.50002
[2024-05-15 23:45:29] 2024-05-15 21:45:09,324 | INFO     | mean x: 1715802367.5
[2024-05-15 23:45:29] 2024-05-15 21:45:09,324 | INFO     | mean y: 2287035.576923077
[2024-05-15 23:45:29] 2024-05-15 21:45:09,324 | INFO     | -- intersect: -28069400100.59951
[2024-05-15 23:45:29] 2024-05-15 21:45:09,324 | INFO     | intersect: -28069400100.59951
[2024-05-15 23:45:29] 2024-05-15 21:45:09,325 | INFO     | chi2: 4.146474861053796
[2024-05-15 23:45:29] 2024-05-15 21:45:09,325 | INFO     | model: linear, x: [1715795261.0, 1715795322.0, 1715795383.0, 1715795444.0, 1715795505.0, 1715795566.0, 1715795627.0, 1715795688.0, 1715795749.0, 1715795810.0, 1715
[2024-05-15 23:45:29] 2024-05-15 21:45:09,325 | INFO     | sum of square deviations: 3723716330.0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,326 | INFO     | sum of deviations: 77965368678.0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,326 | INFO     | mean x: 1715802215.0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,327 | INFO     | mean y: 2294812.9257641924
[2024-05-15 23:45:29] 2024-05-15 21:45:09,327 | INFO     | -- intersect: -35922340797.27497
[2024-05-15 23:45:29] 2024-05-15 21:45:09,327 | INFO     | intersect: -35922340797.27497
[2024-05-15 23:45:29] 2024-05-15 21:45:09,327 | INFO     | chi2: 3.3866517713306865
[2024-05-15 23:45:29] 2024-05-15 21:45:09,327 | INFO     | current chi2=3.3866517713306865 (change=18.324555560672227 %)
[2024-05-15 23:45:29] 2024-05-15 21:45:09,327 | INFO     | right removable region: 228
[2024-05-15 23:45:29] 2024-05-15 21:45:09,327 | INFO     | model: linear, x: [1715795566.0, 1715795627.0, 1715795688.0, 1715795749.0, 1715795810.0, 1715795871.0, 1715795932.0, 1715795993.0, 1715796054.0, 1715796115.0, 1715
[2024-05-15 23:45:29] 2024-05-15 21:45:09,328 | INFO     | sum of square deviations: 3723716330.0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,329 | INFO     | sum of deviations: 15095202190.999998
[2024-05-15 23:45:29] 2024-05-15 21:45:09,329 | INFO     | mean x: 1715802520.0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,329 | INFO     | mean y: 2317464.7379912664
[2024-05-15 23:45:29] 2024-05-15 21:45:09,329 | INFO     | -- intersect: -6953203220.487597
[2024-05-15 23:45:29] 2024-05-15 21:45:09,329 | INFO     | intersect: -6953203220.487597
[2024-05-15 23:45:29] 2024-05-15 21:45:09,329 | INFO     | chi2: 1.964427409437723
[2024-05-15 23:45:29] 2024-05-15 21:45:09,329 | INFO     | current chi2=1.964427409437723 (change=52.624157259728854 %)
[2024-05-15 23:45:29] 2024-05-15 21:45:09,330 | INFO     | model: linear, x: [1715795871.0, 1715795932.0, 1715795993.0, 1715796054.0, 1715796115.0, 1715796176.0, 1715796237.0, 1715796298.0, 1715796359.0, 1715796420.0, 1715
[2024-05-15 23:45:29] 2024-05-15 21:45:09,330 | INFO     | sum of square deviations: 3485088600.0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,331 | INFO     | sum of deviations: -21387318305.5
[2024-05-15 23:45:29] 2024-05-15 21:45:09,331 | INFO     | mean x: 1715802672.5
[2024-05-15 23:45:29] 2024-05-15 21:45:09,331 | INFO     | mean y: 2340780.46875
[2024-05-15 23:45:29] 2024-05-15 21:45:09,331 | INFO     | -- intersect: 10531891709.585752
[2024-05-15 23:45:29] 2024-05-15 21:45:09,331 | INFO     | intersect: 10531891709.585752
[2024-05-15 23:45:29] 2024-05-15 21:45:09,331 | INFO     | chi2: 0.9109121729657199
[2024-05-15 23:45:29] 2024-05-15 21:45:09,331 | INFO     | current chi2=0.9109121729657199 (change=53.62963433571466 %)
[2024-05-15 23:45:29] 2024-05-15 21:45:09,331 | INFO     | model: linear, x: [1715796176.0, 1715796237.0, 1715796298.0, 1715796359.0, 1715796420.0, 1715796481.0, 1715796542.0, 1715796603.0, 1715796664.0, 1715796725.0, 1715
[2024-05-15 23:45:29] 2024-05-15 21:45:09,332 | INFO     | sum of square deviations: 3256879670.0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,332 | INFO     | sum of deviations: -21353018707.0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,333 | INFO     | mean x: 1715802825.0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,333 | INFO     | mean y: 2340696.228310502
[2024-05-15 23:45:29] 2024-05-15 21:45:09,333 | INFO     | -- intersect: 11251626372.093777
[2024-05-15 23:45:29] 2024-05-15 21:45:09,333 | INFO     | intersect: 11251626372.093777
[2024-05-15 23:45:29] 2024-05-15 21:45:09,333 | INFO     | chi2: 0.866826668875995
[2024-05-15 23:45:29] 2024-05-15 21:45:09,333 | INFO     | current chi2=0.866826668875995 (change=4.839709622739222 %)
[2024-05-15 23:45:29] 2024-05-15 21:45:09,333 | INFO     | left removable region: 30
[2024-05-15 23:45:29] 2024-05-15 21:45:09,333 | INFO     | model: linear, x: [1715797091.0, 1715797152.0, 1715797213.0, 1715797274.0, 1715797335.0, 1715797396.0, 1715797457.0, 1715797518.0, 1715797579.0, 1715797640.0, 1715
[2024-05-15 23:45:29] 2024-05-15 21:45:09,334 | INFO     | sum of square deviations: 2406926989.5
[2024-05-15 23:45:29] 2024-05-15 21:45:09,334 | INFO     | sum of deviations: 2297000902.5
[2024-05-15 23:45:29] 2024-05-15 21:45:09,334 | INFO     | mean x: 1715803099.5
[2024-05-15 23:45:29] 2024-05-15 21:45:09,334 | INFO     | mean y: 2343118.52020202
[2024-05-15 23:45:29] 2024-05-15 21:45:09,335 | INFO     | -- intersect: -1635098019.1864793
[2024-05-15 23:45:29] 2024-05-15 21:45:09,335 | INFO     | intersect: -1635098019.1864793
[2024-05-15 23:45:29] 2024-05-15 21:45:09,335 | INFO     | chi2: 0.0007033257318819848
[2024-05-15 23:45:29] 2024-05-15 21:45:09,335 | INFO     | -- intersect: -1635098019.1864793
[2024-05-15 23:45:29] 2024-05-15 21:45:09,335 | INFO     | current memory leak: 0.95 B/s (using 198 data points, chi2=0.00)
[2024-05-15 23:45:29] 2024-05-15 21:45:09,335 | INFO     | ..............................
[2024-05-15 23:45:29] 2024-05-15 21:45:09,335 | INFO     | . Timing measurements:
[2024-05-15 23:45:29] 2024-05-15 21:45:09,336 | INFO     | . get job = 0 s
[2024-05-15 23:45:29] 2024-05-15 21:45:09,336 | INFO     | . initial setup = 1 s
[2024-05-15 23:45:29] 2024-05-15 21:45:09,336 | INFO     | . payload setup = 4 s
[2024-05-15 23:45:29] 2024-05-15 21:45:09,336 | INFO     | . stage-in = 0 s
[2024-05-15 23:45:29] 2024-05-15 21:45:09,336 | INFO     | . payload execution = 14238 s
[2024-05-15 23:45:29] 2024-05-15 21:45:09,336 | INFO     | . stage-out = 0 s
[2024-05-15 23:45:29] 2024-05-15 21:45:09,336 | INFO     | . log creation = 0 s
[2024-05-15 23:45:29] 2024-05-15 21:45:09,336 | INFO     | ..............................
[2024-05-15 23:45:29] 2024-05-15 21:45:09,409 | WARNING  | process 3290037 is no longer using CPU - aborting
[2024-05-15 23:45:29] 2024-05-15 21:45:09,409 | INFO     | aborting job monitoring since job object (job id=6201810011) has expired
[2024-05-15 23:45:29] 2024-05-15 21:45:09,634 | INFO     | 
[2024-05-15 23:45:29] 2024-05-15 21:45:09,634 | INFO     | job summary report
[2024-05-15 23:45:29] 2024-05-15 21:45:09,634 | INFO     | --------------------------------------------------
[2024-05-15 23:45:29] 2024-05-15 21:45:09,634 | INFO     | PanDA job id: 6201810011
[2024-05-15 23:45:29] 2024-05-15 21:45:09,634 | INFO     | task id: 38744253
[2024-05-15 23:45:29] 2024-05-15 21:45:09,634 | INFO     | errors: (none)
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | pilot state: finished 
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | transexitcode: 0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | exeerrorcode: 0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | exeerrordiag: 
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | exitcode: 0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | exitmsg: OK
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | cpuconsumptiontime: 54104 s
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | nevents: 400
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | neventsw: 0
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | pid: 3290037
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | pgrp: 3290037
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | corecount: 4
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | event service: False
[2024-05-15 23:45:29] 2024-05-15 21:45:09,635 | INFO     | sizes: {0: 2391928, 1: 2392127, 4: 2392333, 11: 2392361, 14247: 2423069, 14248: 2432235, 14257: 2432349}
[2024-05-15 23:45:29] 2024-05-15 21:45:09,636 | INFO     | --------------------------------------------------
[2024-05-15 23:45:29] 2024-05-15 21:45:09,636 | INFO     | 
[2024-05-15 23:45:29] 2024-05-15 21:45:09,636 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/1
[2024-05-15 23:45:29] 2024-05-15 21:45:09,660 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,660 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,660 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,661 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,661 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,661 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,661 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,661 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,661 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,661 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,662 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,662 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,662 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,662 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,662 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,662 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,662 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,663 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 23:45:29] 2024-05-15 21:45:09,663 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,663 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 23:45:29] 2024-05-15 21:45:09,663 | INFO     | job 6201810011 has completed (purged errors)
[2024-05-15 23:45:29] 2024-05-15 21:45:09,663 | INFO     | overall cleanup function is called
[2024-05-15 23:45:29] 2024-05-15 21:45:10,671 | INFO     | --- collectZombieJob: --- 10, [3290037]
[2024-05-15 23:45:29] 2024-05-15 21:45:10,671 | INFO     | zombie collector waiting for pid 3290037
[2024-05-15 23:45:29] 2024-05-15 21:45:10,671 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 23:45:29] 2024-05-15 21:45:11,676 | INFO     | collected zombie processes
[2024-05-15 23:45:29] 2024-05-15 21:45:11,676 | INFO     | will now attempt to kill all subprocesses of pid=3290037
[2024-05-15 23:45:29] 2024-05-15 21:45:11,768 | INFO     | process IDs to be killed: [3290037] (in reverse order)
[2024-05-15 23:45:29] 2024-05-15 21:45:11,830 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 23:45:29] 2024-05-15 21:45:11,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 23:45:29] 2024-05-15 21:45:11,835 | INFO     | did not find any defunct processes belonging to 3290037
[2024-05-15 23:45:29] 2024-05-15 21:45:11,838 | INFO     | did not find any defunct processes belonging to 3290037
[2024-05-15 23:45:29] 2024-05-15 21:45:11,839 | INFO     | ready for new job
[2024-05-15 23:45:29] 2024-05-15 21:45:11,839 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 23:45:29] 2024-05-15 21:45:11,840 | INFO     | *************************************
[2024-05-15 23:45:29] 2024-05-15 21:45:11,840 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 23:45:29] 2024-05-15 21:45:11,840 | INFO     | *************************************
[2024-05-15 23:45:29] 2024-05-15 21:45:11,840 | INFO     | 
[2024-05-15 23:45:29] 2024-05-15 21:45:11,842 | INFO     | architecture information:
[2024-05-15 23:45:29] 2024-05-15 21:45:11,842 | INFO     | executing command: cat /etc/os-release
[2024-05-15 23:45:29] 2024-05-15 21:45:11,851 | INFO     | cat /etc/os-release:
[2024-05-15 23:45:29] NAME="CentOS Linux"
[2024-05-15 23:45:29] VERSION="7 (Core)"
[2024-05-15 23:45:29] ID="centos"
[2024-05-15 23:45:29] ID_LIKE="rhel fedora"
[2024-05-15 23:45:29] VERSION_ID="7"
[2024-05-15 23:45:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 23:45:29] ANSI_COLOR="0;31"
[2024-05-15 23:45:29] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 23:45:29] HOME_URL="https://www.centos.org/"
[2024-05-15 23:45:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 23:45:29] 
[2024-05-15 23:45:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 23:45:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 23:45:29] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 23:45:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 23:45:29] 
[2024-05-15 23:45:29] 2024-05-15 21:45:11,852 | INFO     | *************************************
[2024-05-15 23:45:29] 2024-05-15 21:45:12,355 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/1
[2024-05-15 23:45:29] 2024-05-15 21:45:12,369 | INFO     | sufficient remaining disk space (1622001319936 B)
[2024-05-15 23:45:29] 2024-05-15 21:45:12,370 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 23:45:29] 2024-05-15 21:45:12,370 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 23:45:29] 2024-05-15 21:45:12,597 | INFO     | all data control threads have been joined
[2024-05-15 23:45:29] 2024-05-15 21:45:12,728 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 23:45:29] 2024-05-15 21:45:12,728 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 23:45:29] 2024-05-15 21:45:12,728 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 23:45:29] 2024-05-15 21:45:12,917 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 23:45:29] 2024-05-15 21:45:12,917 | INFO     | aborting loop
[2024-05-15 23:45:29] 2024-05-15 21:45:13,256 | INFO     | all job control threads have been joined
[2024-05-15 23:45:29] 2024-05-15 21:45:13,375 | INFO     | [job] retrieve thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:13,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 23:45:29] 2024-05-15 21:45:13,602 | INFO     | [data] control thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:13,648 | INFO     | all payload control threads have been joined
[2024-05-15 23:45:29] 2024-05-15 21:45:13,688 | INFO     | [job] validate thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:13,922 | INFO     | [job] job monitor thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:13,963 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:14,020 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:14,221 | INFO     | [data] copytool_in thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:14,262 | INFO     | [job] control thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:14,382 | INFO     | [payload] failed_post thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:14,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 23:45:29] 2024-05-15 21:45:14,645 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:14,653 | INFO     | [payload] control thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:14,925 | INFO     | [payload] validate_post thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:15,410 | INFO     | [job] queue monitor thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:15,478 | INFO     | [data] copytool_out thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:15,527 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 23:45:29] 2024-05-15 21:45:19,532 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:22,538 | INFO     | job.realtimelogging is not enabled
[2024-05-15 23:45:29] 2024-05-15 21:45:23,543 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 23:45:29] 2024-05-15 21:45:23,594 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 46914195665984)>', '<ExcThread(monitor, started 46914369017600)>']
[2024-05-15 23:45:29] 2024-05-15 21:45:23,783 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 23:45:29] 2024-05-15 21:45:23,783 | INFO     | [monitor] control thread has ended
[2024-05-15 23:45:29] 2024-05-15 21:45:28,619 | INFO     | all workflow threads have been joined
[2024-05-15 23:45:29] 2024-05-15 21:45:28,619 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 23:45:29] 2024-05-15 21:45:28,619 | INFO     | traces error code: 0
[2024-05-15 23:45:29] 2024-05-15 21:45:28,620 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 23:45:29] 2024-05-15 21:45:28,686 [wrapper] ==== pilot stdout END ====
[2024-05-15 23:45:29] 2024-05-15 21:45:28,688 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 23:45:29] 2024-05-15 21:45:28,690 [wrapper] pilotpid: 3283235
[2024-05-15 23:45:29] 2024-05-15 21:45:28,692 [wrapper] Pilot exit status: 0
[2024-05-15 23:45:29] 2024-05-15 21:45:28,700 [wrapper] pandaids: 6201810011
[2024-05-15 23:45:29] 2024-05-15 21:45:28,763 [wrapper] cleanup: SIGTERM to supervisor_pilot 3666009 3283236
[2024-05-15 23:45:29] 2024-05-15 21:45:28,765 [wrapper] Test setup, not cleaning
[2024-05-15 23:45:29] 2024-05-15 21:45:28,767 [wrapper] ==== wrapper stdout END ====
[2024-05-15 23:45:29] 2024-05-15 21:45:28,769 [wrapper] ==== wrapper stderr END ====
[2024-05-15 23:45:29] 2024-05-15 21:45:28,773 [wrapper] apfmon messages muted
[2024-05-15 23:45:29]  *** Error codes and diagnostics ***
[2024-05-15 23:45:29]     "exeErrorCode": 0,
[2024-05-15 23:45:29]     "exeErrorDiag": "",
[2024-05-15 23:45:29]     "pilotErrorCode": 0,
[2024-05-15 23:45:29]     "pilotErrorDiag": "",
[2024-05-15 23:45:29]  *** Listing of results directory ***
[2024-05-15 23:45:29] total 807768
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc    467845 May 10 20:00 pilot3.tar.gz
[2024-05-15 23:45:29] -rwx------ 1 boinc boinc     32251 May 10 20:28 runpilot2-wrapper.sh
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc      5633 May 10 20:28 queuedata.json
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc       100 May 15 19:47 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 23:45:29] -rwxr-xr-x 1 boinc boinc      7986 May 15 19:47 run_atlas
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc       105 May 15 19:47 job.xml
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc      6456 May 15 19:47 init_data.xml
[2024-05-15 23:45:29] -rw-r--r-- 2 boinc boinc 589073481 May 15 19:47 EVNT.38744251._000005.pool.root.1
[2024-05-15 23:45:29] drwxrwx--x 2 boinc boinc      4096 May 15 19:47 shared
[2024-05-15 23:45:29] -rw-r--r-- 2 boinc boinc    479969 May 15 19:47 input.tar.gz
[2024-05-15 23:45:29] -rw-r--r-- 2 boinc boinc     17537 May 15 19:47 start_atlas.sh
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc         0 May 15 19:47 boinc_lockfile
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc      2517 May 15 19:47 pandaJob.out
[2024-05-15 23:45:29] -rw------- 1 boinc boinc       424 May 15 19:47 setup.sh.local
[2024-05-15 23:45:29] -rw------- 1 boinc boinc   1011265 May 15 19:47 agis_schedconf.cvmfs.json
[2024-05-15 23:45:29] -rw------- 1 boinc boinc   1324701 May 15 19:47 cric_ddmendpoints.json
[2024-05-15 23:45:29] drwx------ 4 boinc boinc      4096 May 15 19:47 pilot3
[2024-05-15 23:45:29] -rw------- 1 boinc boinc 230706614 May 15 23:44 HITS.38744253._000700.pool.root.1
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc       532 May 15 23:44 boinc_task_state.xml
[2024-05-15 23:45:29] -rw------- 1 boinc boinc      1050 May 15 23:44 memory_monitor_summary.json
[2024-05-15 23:45:29] -rw------- 1 boinc boinc        95 May 15 23:44 pilot_heartbeat.json
[2024-05-15 23:45:29] -rw------- 1 boinc boinc         0 May 15 23:44 agis_ddmendpoints.agis.ALL.json
[2024-05-15 23:45:29] -rw------- 1 boinc boinc    352607 May 15 23:45 log.38744253._000700.job.log.tgz.1
[2024-05-15 23:45:29] -rw------- 1 boinc boinc      7763 May 15 23:45 heartbeat.json
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc      8192 May 15 23:45 boinc_mmap_file
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc        28 May 15 23:45 wrapper_checkpoint.txt
[2024-05-15 23:45:29] -rw------- 1 boinc boinc      4294 May 15 23:45 pilotlog.txt
[2024-05-15 23:45:29] -rw------- 1 boinc boinc   1569725 May 15 23:45 log.38744253._000700.job.log.1
[2024-05-15 23:45:29] -rw------- 1 boinc boinc       357 May 15 23:45 output.list
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc       620 May 15 23:45 runtime_log
[2024-05-15 23:45:29] -rw------- 1 boinc boinc   1945600 May 15 23:45 result.tar.gz
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc     11410 May 15 23:45 runtime_log.err
[2024-05-15 23:45:29] -rw------- 1 boinc boinc       658 May 15 23:45 SWQKDm49jP5nsSi4apGgGQJmABFKDmABFKDm4ySLDmX4IKDm6nltMm.diag
[2024-05-15 23:45:29] -rw-r--r-- 1 boinc boinc     21305 May 15 23:45 stderr.txt
[2024-05-15 23:45:29] HITS file was successfully produced:
[2024-05-15 23:45:29] -rw------- 1 boinc boinc 230706614 May 15 23:44 shared/HITS.pool.root.1
[2024-05-15 23:45:29]  *** Contents of shared directory: ***
[2024-05-15 23:45:29] total 802968
[2024-05-15 23:45:29] -rw-r--r-- 2 boinc boinc 589073481 May 15 19:47 ATLAS.root_0
[2024-05-15 23:45:29] -rw-r--r-- 2 boinc boinc    479969 May 15 19:47 input.tar.gz
[2024-05-15 23:45:29] -rw-r--r-- 2 boinc boinc     17537 May 15 19:47 start_atlas.sh
[2024-05-15 23:45:29] -rw------- 1 boinc boinc 230706614 May 15 23:44 HITS.pool.root.1
[2024-05-15 23:45:29] -rw------- 1 boinc boinc   1945600 May 15 23:45 result.tar.gz
23:45:30 (3279008): run_atlas exited; CPU time 53858.007682
23:45:30 (3279008): called boinc_finish(0)

</stderr_txt>
]]>

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