Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:29:08 (2044455): wrapper (7.7.26015): starting
21:29:08 (2044455): wrapper: running run_atlas (--nthreads 4)
[2024-05-14 21:29:08] Arguments: --nthreads 4
[2024-05-14 21:29:08] Threads: 4
[2024-05-14 21:29:08] Checking for CVMFS
[2024-05-14 21:29:08] No cvmfs_config command found, will try listing directly
[2024-05-14 21:29:08] CVMFS is ok
[2024-05-14 21:29:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-14 21:29:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-14 21:29:08] Further information can be found at the LHC@home message board.
[2024-05-14 21:29:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-14 21:29:08] Checking for apptainer binary...
[2024-05-14 21:29:08] which: no apptainer in ((null))
[2024-05-14 21:29:08] apptainer is not installed, using version from CVMFS
[2024-05-14 21:29:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-14 21:29:09] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2024-05-14 21:29:09] apptainer works
[2024-05-14 21:29:09] Set ATHENA_PROC_NUMBER=4
[2024-05-14 21:29:09] Set ATHENA_CORE_NUMBER=4
[2024-05-14 21:29:09] Starting ATLAS job with PandaID=6201790763
[2024-05-14 21:29:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:51:42 (896908): wrapper (7.7.26015): starting
17:51:42 (896908): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 17:51:42] Arguments: --nthreads 4
[2024-05-15 17:51:42] Threads: 4
[2024-05-15 17:51:42] This job has been restarted, cleaning up previous attempt
[2024-05-15 17:51:42] Checking for CVMFS
[2024-05-15 17:51:42] No cvmfs_config command found, will try listing directly
[2024-05-15 17:51:42] CVMFS is ok
[2024-05-15 17:51:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 17:51:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 17:51:42] Further information can be found at the LHC@home message board.
[2024-05-15 17:51:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 17:51:42] Checking for apptainer binary...
[2024-05-15 17:51:42] which: no apptainer in ((null))
[2024-05-15 17:51:42] apptainer is not installed, using version from CVMFS
[2024-05-15 17:51:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 17:51:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2024-05-15 17:51:44] apptainer works
[2024-05-15 17:51:44] Set ATHENA_PROC_NUMBER=4
[2024-05-15 17:51:44] Set ATHENA_CORE_NUMBER=4
[2024-05-15 17:51:44] Starting ATLAS job with PandaID=6201790763
[2024-05-15 17:51:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 14:38:02]  *** The last 200 lines of the pilot log: ***
[2024-05-16 14:38:02] 2024-05-16 12:37:37,904 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-16 14:38:02] 2024-05-16 12:37:37,969 | INFO     | job 6201790763 has state=finished
[2024-05-16 14:38:02] 2024-05-16 12:37:37,969 | INFO     | preparing for final server update for job 6201790763 in state='finished'
[2024-05-16 14:38:02] 2024-05-16 12:37:37,970 | INFO     | this job has now completed (state=finished)
[2024-05-16 14:38:02] 2024-05-16 12:37:37,970 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-16 14:38:02] 2024-05-16 12:37:37,970 | INFO     | job 6201790763 has finished - writing final server update
[2024-05-16 14:38:02] 2024-05-16 12:37:37,970 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_893211/.job.ad'
[2024-05-16 14:38:02] 2024-05-16 12:37:37,970 | INFO     | total number of processed events: 1950 (read)
[2024-05-16 14:38:02] 2024-05-16 12:37:37,973 | INFO     | executing command: lscpu
[2024-05-16 14:38:02] 2024-05-16 12:37:38,017 | INFO     | found 32 cores (16 cores per socket, 2 sockets)
[2024-05-16 14:38:02] 2024-05-16 12:37:38,017 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-16 14:38:02] 2024-05-16 12:37:38,049 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-16 14:38:02] 2024-05-16 12:37:41,665 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-16 14:38:02] 2024-05-16 12:37:41,671 | INFO     | using path: /scratch/boinc/var/slot28/slots/1/PanDA_Pilot-6201790763/memory_monitor_summary.json (trf name=prmon)
[2024-05-16 14:38:02] 2024-05-16 12:37:41,673 | INFO     | extracted standard info from prmon json
[2024-05-16 14:38:02] 2024-05-16 12:37:41,673 | INFO     | extracted standard memory fields from prmon json
[2024-05-16 14:38:02] 2024-05-16 12:37:41,673 | WARNING  | GPU info not found in prmon json
[2024-05-16 14:38:02] 2024-05-16 12:37:41,692 | INFO     | fitting pss+swap vs Time
[2024-05-16 14:38:02] 2024-05-16 12:37:41,693 | INFO     | model: linear, x: [1715788339.0, 1715788400.0, 1715788461.0, 1715788522.0, 1715788583.0, 1715788644.0, 1715788705.0, 1715788766.0, 1715788827.0, 1715788888.0, 1715
[2024-05-16 14:38:02] 2024-05-16 12:37:41,693 | INFO     | sum of square deviations: 570015152700.0
[2024-05-16 14:38:02] 2024-05-16 12:37:41,713 | INFO     | sum of deviations: 2371591079568.001
[2024-05-16 14:38:02] 2024-05-16 12:37:41,713 | INFO     | mean x: 1715825671.0
[2024-05-16 14:38:02] 2024-05-16 12:37:41,713 | INFO     | mean y: 2638462.0318367346
[2024-05-16 14:38:02] 2024-05-16 12:37:41,713 | INFO     | -- intersect: -7136183788.854933
[2024-05-16 14:38:02] 2024-05-16 12:37:41,713 | INFO     | intersect: -7136183788.854933
[2024-05-16 14:38:02] 2024-05-16 12:37:41,714 | INFO     | chi2: 13.412829418095836
[2024-05-16 14:38:02] 2024-05-16 12:37:41,715 | INFO     | model: linear, x: [1715788339.0, 1715788400.0, 1715788461.0, 1715788522.0, 1715788583.0, 1715788644.0, 1715788705.0, 1715788766.0, 1715788827.0, 1715788888.0, 1715
[2024-05-16 14:38:02] 2024-05-16 12:37:41,715 | INFO     | sum of square deviations: 563063822365.0
[2024-05-16 14:38:02] 2024-05-16 12:37:41,735 | INFO     | sum of deviations: 2722094551331.5
[2024-05-16 14:38:02] 2024-05-16 12:37:41,735 | INFO     | mean x: 1715825518.5
[2024-05-16 14:38:02] 2024-05-16 12:37:41,735 | INFO     | mean y: 2646152.2040983606
[2024-05-16 14:38:02] 2024-05-16 12:37:41,735 | INFO     | -- intersect: -8292398049.58215
[2024-05-16 14:38:02] 2024-05-16 12:37:41,735 | INFO     | intersect: -8292398049.58215
[2024-05-16 14:38:02] 2024-05-16 12:37:41,736 | INFO     | chi2: 10.788147918587056
[2024-05-16 14:38:02] 2024-05-16 12:37:41,736 | INFO     | current chi2=10.788147918587056 (change=19.568440167946274 %)
[2024-05-16 14:38:02] 2024-05-16 12:37:41,736 | INFO     | right removable region: 1219
[2024-05-16 14:38:02] 2024-05-16 12:37:41,737 | INFO     | model: linear, x: [1715788644.0, 1715788705.0, 1715788766.0, 1715788827.0, 1715788888.0, 1715788949.0, 1715789010.0, 1715789071.0, 1715789132.0, 1715789193.0, 1715
[2024-05-16 14:38:02] 2024-05-16 12:37:41,737 | INFO     | sum of square deviations: 563063822365.0
[2024-05-16 14:38:02] 2024-05-16 12:37:41,756 | INFO     | sum of deviations: 2001942743866.0002
[2024-05-16 14:38:02] 2024-05-16 12:37:41,756 | INFO     | mean x: 1715825823.5
[2024-05-16 14:38:02] 2024-05-16 12:37:41,756 | INFO     | mean y: 2646568.8491803277
[2024-05-16 14:38:02] 2024-05-16 12:37:41,756 | INFO     | -- intersect: -6097878665.867529
[2024-05-16 14:38:02] 2024-05-16 12:37:41,756 | INFO     | intersect: -6097878665.867529
[2024-05-16 14:38:02] 2024-05-16 12:37:41,757 | INFO     | chi2: 10.486456197662704
[2024-05-16 14:38:02] 2024-05-16 12:37:41,757 | INFO     | current chi2=10.486456197662704 (change=21.81771741974913 %)
[2024-05-16 14:38:02] 2024-05-16 12:37:41,757 | INFO     | left removable region: 10
[2024-05-16 14:38:02] 2024-05-16 12:37:41,758 | INFO     | model: linear, x: [1715788949.0, 1715789010.0, 1715789071.0, 1715789132.0, 1715789193.0, 1715789254.0, 1715789315.0, 1715789376.0, 1715789437.0, 1715789498.0, 1715
[2024-05-16 14:38:02] 2024-05-16 12:37:41,758 | INFO     | sum of square deviations: 547970311460.0
[2024-05-16 14:38:02] 2024-05-16 12:37:41,777 | INFO     | sum of deviations: 2121763372100.0
[2024-05-16 14:38:02] 2024-05-16 12:37:41,777 | INFO     | mean x: 1715825793.0
[2024-05-16 14:38:02] 2024-05-16 12:37:41,777 | INFO     | mean y: 2662894.1861042185
[2024-05-16 14:38:02] 2024-05-16 12:37:41,777 | INFO     | -- intersect: -6641084484.740257
[2024-05-16 14:38:02] 2024-05-16 12:37:41,777 | INFO     | intersect: -6641084484.740257
[2024-05-16 14:38:02] 2024-05-16 12:37:41,778 | INFO     | chi2: 5.316370394289521
[2024-05-16 14:38:02] 2024-05-16 12:37:41,778 | INFO     | -- intersect: -6641084484.740257
[2024-05-16 14:38:02] 2024-05-16 12:37:41,778 | INFO     | current memory leak: 3.87 B/s (using 1209 data points, chi2=5.32)
[2024-05-16 14:38:02] 2024-05-16 12:37:41,779 | INFO     | ..............................
[2024-05-16 14:38:02] 2024-05-16 12:37:41,779 | INFO     | . Timing measurements:
[2024-05-16 14:38:02] 2024-05-16 12:37:41,779 | INFO     | . get job = 0 s
[2024-05-16 14:38:02] 2024-05-16 12:37:41,779 | INFO     | . initial setup = 0 s
[2024-05-16 14:38:02] 2024-05-16 12:37:41,779 | INFO     | . payload setup = 7 s
[2024-05-16 14:38:02] 2024-05-16 12:37:41,779 | INFO     | . stage-in = 0 s
[2024-05-16 14:38:02] 2024-05-16 12:37:41,779 | INFO     | . payload execution = 74716 s
[2024-05-16 14:38:02] 2024-05-16 12:37:41,779 | INFO     | . stage-out = 2 s
[2024-05-16 14:38:02] 2024-05-16 12:37:41,779 | INFO     | . log creation = 0 s
[2024-05-16 14:38:02] 2024-05-16 12:37:41,779 | INFO     | ..............................
[2024-05-16 14:38:02] 2024-05-16 12:37:41,836 | INFO     | 
[2024-05-16 14:38:02] 2024-05-16 12:37:41,837 | INFO     | job summary report
[2024-05-16 14:38:02] 2024-05-16 12:37:41,837 | INFO     | --------------------------------------------------
[2024-05-16 14:38:02] 2024-05-16 12:37:41,842 | WARNING  | process 911462 is no longer using CPU - aborting
[2024-05-16 14:38:02] 2024-05-16 12:37:41,842 | INFO     | PanDA job id: 6201790763
[2024-05-16 14:38:02] 2024-05-16 12:37:41,842 | INFO     | aborting job monitoring since job object (job id=6201790763) has expired
[2024-05-16 14:38:02] 2024-05-16 12:37:41,842 | INFO     | task id: 38734053
[2024-05-16 14:38:02] 2024-05-16 12:37:41,842 | INFO     | errors: (none)
[2024-05-16 14:38:02] 2024-05-16 12:37:41,842 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 14:38:02] 2024-05-16 12:37:41,842 | INFO     | pilot state: finished 
[2024-05-16 14:38:02] 2024-05-16 12:37:41,842 | INFO     | transexitcode: 0
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | exeerrorcode: 0
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | exeerrordiag: 
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | exitcode: 0
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | exitmsg: OK
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | cpuconsumptiontime: 293850 s
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | nevents: 1950
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | neventsw: 0
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | pid: 911462
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | pgrp: 911462
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | corecount: 4
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | event service: False
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | sizes: {0: 2394736, 1: 2394935, 4: 2395141, 11: 2395169, 74727: 2473514, 74730: 2482680, 74734: 2482846}
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | --------------------------------------------------
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | 
[2024-05-16 14:38:02] 2024-05-16 12:37:41,843 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/1
[2024-05-16 14:38:02] 2024-05-16 12:37:41,861 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,861 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,861 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,861 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 14:38:02] 2024-05-16 12:37:41,862 | INFO     | job 6201790763 has completed (purged errors)
[2024-05-16 14:38:02] 2024-05-16 12:37:41,863 | INFO     | overall cleanup function is called
[2024-05-16 14:38:02] 2024-05-16 12:37:42,874 | INFO     | --- collectZombieJob: --- 10, [911462]
[2024-05-16 14:38:02] 2024-05-16 12:37:42,874 | INFO     | zombie collector waiting for pid 911462
[2024-05-16 14:38:02] 2024-05-16 12:37:42,874 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 14:38:02] 2024-05-16 12:37:43,879 | INFO     | collected zombie processes
[2024-05-16 14:38:02] 2024-05-16 12:37:43,879 | INFO     | will now attempt to kill all subprocesses of pid=911462
[2024-05-16 14:38:02] 2024-05-16 12:37:44,042 | INFO     | process IDs to be killed: [911462] (in reverse order)
[2024-05-16 14:38:02] 2024-05-16 12:37:44,158 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 14:38:02] 2024-05-16 12:37:44,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 14:38:02] 2024-05-16 12:37:44,166 | INFO     | did not find any defunct processes belonging to 911462
[2024-05-16 14:38:02] 2024-05-16 12:37:44,173 | INFO     | did not find any defunct processes belonging to 911462
[2024-05-16 14:38:02] 2024-05-16 12:37:44,173 | INFO     | ready for new job
[2024-05-16 14:38:02] 2024-05-16 12:37:44,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 14:38:02] 2024-05-16 12:37:44,179 | INFO     | *************************************
[2024-05-16 14:38:02] 2024-05-16 12:37:44,179 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 14:38:02] 2024-05-16 12:37:44,179 | INFO     | *************************************
[2024-05-16 14:38:02] 2024-05-16 12:37:44,179 | INFO     | 
[2024-05-16 14:38:02] 2024-05-16 12:37:44,182 | INFO     | architecture information:
[2024-05-16 14:38:02] 2024-05-16 12:37:44,182 | INFO     | executing command: cat /etc/os-release
[2024-05-16 14:38:02] 2024-05-16 12:37:44,196 | INFO     | cat /etc/os-release:
[2024-05-16 14:38:02] NAME="CentOS Linux"
[2024-05-16 14:38:02] VERSION="7 (Core)"
[2024-05-16 14:38:02] ID="centos"
[2024-05-16 14:38:02] ID_LIKE="rhel fedora"
[2024-05-16 14:38:02] VERSION_ID="7"
[2024-05-16 14:38:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 14:38:02] ANSI_COLOR="0;31"
[2024-05-16 14:38:02] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 14:38:02] HOME_URL="https://www.centos.org/"
[2024-05-16 14:38:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 14:38:02] 
[2024-05-16 14:38:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 14:38:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 14:38:02] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 14:38:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 14:38:02] 
[2024-05-16 14:38:02] 2024-05-16 12:37:44,197 | INFO     | *************************************
[2024-05-16 14:38:02] 2024-05-16 12:37:44,700 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/1
[2024-05-16 14:38:02] 2024-05-16 12:37:44,721 | INFO     | sufficient remaining disk space (563940950016 B)
[2024-05-16 14:38:02] 2024-05-16 12:37:44,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 14:38:02] 2024-05-16 12:37:44,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 14:38:02] 2024-05-16 12:37:44,722 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-16 14:38:02] 2024-05-16 12:37:44,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 14:38:02] 2024-05-16 12:37:44,723 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 14:38:02] 2024-05-16 12:37:44,723 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 14:38:02] 2024-05-16 12:37:44,723 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 14:38:02] 2024-05-16 12:37:45,317 | INFO     | all data control threads have been joined
[2024-05-16 14:38:02] 2024-05-16 12:37:45,350 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 14:38:02] 2024-05-16 12:37:45,350 | INFO     | aborting loop
[2024-05-16 14:38:02] 2024-05-16 12:37:45,418 | INFO     | all payload control threads have been joined
[2024-05-16 14:38:02] 2024-05-16 12:37:45,727 | INFO     | [job] retrieve thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:45,793 | INFO     | [payload] validate_post thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:45,887 | INFO     | [data] copytool_in thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:45,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 14:38:02] 2024-05-16 12:37:46,220 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:46,264 | INFO     | all job control threads have been joined
[2024-05-16 14:38:02] 2024-05-16 12:37:46,323 | INFO     | [data] control thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:46,355 | INFO     | [job] job monitor thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:46,424 | INFO     | [payload] control thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:46,464 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:46,515 | INFO     | [payload] failed_post thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:46,562 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:46,846 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 14:38:02] 2024-05-16 12:37:47,219 | INFO     | [job] validate thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:47,269 | INFO     | [job] control thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:47,851 | INFO     | [job] queue monitor thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:47,919 | INFO     | [data] copytool_out thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:48,728 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:54,927 | INFO     | job.realtimelogging is not enabled
[2024-05-16 14:38:02] 2024-05-16 12:37:55,932 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 14:38:02] 2024-05-16 12:37:56,076 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47641670321216)>', '<ExcThread(monitor, started 47641843443456)>']
[2024-05-16 14:38:02] 2024-05-16 12:37:56,783 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 14:38:02] 2024-05-16 12:37:56,783 | INFO     | [monitor] control thread has ended
[2024-05-16 14:38:02] 2024-05-16 12:38:01,102 | INFO     | all workflow threads have been joined
[2024-05-16 14:38:02] 2024-05-16 12:38:01,102 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 14:38:02] 2024-05-16 12:38:01,102 | INFO     | traces error code: 0
[2024-05-16 14:38:02] 2024-05-16 12:38:01,103 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 14:38:02] 2024-05-16 12:38:01,210 [wrapper] ==== pilot stdout END ====
[2024-05-16 14:38:02] 2024-05-16 12:38:01,213 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 14:38:02] 2024-05-16 12:38:01,215 [wrapper] pilotpid: 901568
[2024-05-16 14:38:02] 2024-05-16 12:38:01,217 [wrapper] Pilot exit status: 0
[2024-05-16 14:38:02] 2024-05-16 12:38:01,225 [wrapper] pandaids: 6201790763 6201790763
[2024-05-16 14:38:02] 2024-05-16 12:38:01,293 [wrapper] cleanup: SIGTERM to supervisor_pilot 3800930 901569
[2024-05-16 14:38:02] 2024-05-16 12:38:01,295 [wrapper] Test setup, not cleaning
[2024-05-16 14:38:02] 2024-05-16 12:38:01,297 [wrapper] ==== wrapper stdout END ====
[2024-05-16 14:38:02] 2024-05-16 12:38:01,299 [wrapper] ==== wrapper stderr END ====
[2024-05-16 14:38:02] 2024-05-16 12:38:01,303 [wrapper] apfmon messages muted
[2024-05-16 14:38:02]  *** Error codes and diagnostics ***
[2024-05-16 14:38:02]     "exeErrorCode": 0,
[2024-05-16 14:38:02]     "exeErrorDiag": "",
[2024-05-16 14:38:02]     "pilotErrorCode": 0,
[2024-05-16 14:38:02]     "pilotErrorDiag": "",
[2024-05-16 14:38:02]  *** Listing of results directory ***
[2024-05-16 14:38:02] total 1841340
[2024-05-16 14:38:02] drwx------ 4 boinc boinc       4096 May  8 14:24 pilot3
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc     467845 May 10 20:00 pilot3.tar.gz
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc       5633 May 10 20:03 queuedata.json
[2024-05-16 14:38:02] -rwx------ 1 boinc boinc      32251 May 10 20:03 runpilot2-wrapper.sh
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc        100 May 14 21:29 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 14:38:02] -rwxr-xr-x 1 boinc boinc       7986 May 14 21:29 run_atlas
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc        105 May 14 21:29 job.xml
[2024-05-16 14:38:02] -rw-r--r-- 3 boinc boinc  329149273 May 14 21:29 EVNT.38734051._000926.pool.root.1
[2024-05-16 14:38:02] -rw-r--r-- 3 boinc boinc  329149273 May 14 21:29 ATLAS.root_0
[2024-05-16 14:38:02] -rw-r--r-- 2 boinc boinc      17537 May 14 21:29 start_atlas.sh
[2024-05-16 14:38:02] drwxrwx--x 2 boinc boinc       4096 May 14 21:29 shared
[2024-05-16 14:38:02] -rw-r--r-- 2 boinc boinc     480170 May 14 21:29 input.tar.gz
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc          0 May 14 21:29 boinc_lockfile
[2024-05-16 14:38:02] -rw------- 1 boinc boinc    1324588 May 14 21:29 cric_ddmendpoints.json
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc       2853 May 15 17:51 pandaJob.out
[2024-05-16 14:38:02] -rw------- 1 boinc boinc        424 May 15 17:51 setup.sh.local
[2024-05-16 14:38:02] -rw------- 1 boinc boinc    1010542 May 15 17:51 agis_schedconf.cvmfs.json
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc       6671 May 15 18:31 init_data.xml
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc        534 May 16 14:29 boinc_task_state.xml
[2024-05-16 14:38:02] -rw------- 1 boinc boinc 1192456057 May 16 14:37 HITS.38734053._005050.pool.root.1
[2024-05-16 14:38:02] -rw------- 1 boinc boinc         97 May 16 14:37 pilot_heartbeat.json
[2024-05-16 14:38:02] -rw------- 1 boinc boinc       1060 May 16 14:37 memory_monitor_summary.json
[2024-05-16 14:38:02] -rw------- 1 boinc boinc          0 May 16 14:37 agis_ddmendpoints.agis.ALL.json
[2024-05-16 14:38:02] -rw------- 1 boinc boinc    2142230 May 16 14:37 log.38734053._005050.job.log.tgz.1
[2024-05-16 14:38:02] -rw------- 1 boinc boinc      27614 May 16 14:37 heartbeat.json
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc       8192 May 16 14:37 boinc_mmap_file
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc         30 May 16 14:37 wrapper_checkpoint.txt
[2024-05-16 14:38:02] -rw------- 1 boinc boinc       4416 May 16 14:38 pilotlog.txt
[2024-05-16 14:38:02] -rw------- 1 boinc boinc   13467578 May 16 14:38 log.38734053._005050.job.log.1
[2024-05-16 14:38:02] -rw------- 1 boinc boinc        353 May 16 14:38 output.list
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc        620 May 16 14:38 runtime_log
[2024-05-16 14:38:02] -rw------- 1 boinc boinc   15646720 May 16 14:38 result.tar.gz
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc      11487 May 16 14:38 runtime_log.err
[2024-05-16 14:38:02] -rw------- 1 boinc boinc        778 May 16 14:38 5PoKDmCmjP5nsSi4apGgGQJmABFKDmABFKDm4ySLDmX2IKDmbAMgGo.diag
[2024-05-16 14:38:02] -rw-r--r-- 1 boinc boinc      23545 May 16 14:38 stderr.txt
[2024-05-16 14:38:02] HITS file was successfully produced:
[2024-05-16 14:38:02] -rw------- 1 boinc boinc 1192456057 May 16 14:37 shared/HITS.pool.root.1
[2024-05-16 14:38:02]  *** Contents of shared directory: ***
[2024-05-16 14:38:02] total 1501720
[2024-05-16 14:38:02] -rw-r--r-- 3 boinc boinc  329149273 May 14 21:29 ATLAS.root_0
[2024-05-16 14:38:02] -rw-r--r-- 2 boinc boinc      17537 May 14 21:29 start_atlas.sh
[2024-05-16 14:38:02] -rw-r--r-- 2 boinc boinc     480170 May 14 21:29 input.tar.gz
[2024-05-16 14:38:02] -rw------- 1 boinc boinc 1192456057 May 16 14:37 HITS.pool.root.1
[2024-05-16 14:38:02] -rw------- 1 boinc boinc   15646720 May 16 14:38 result.tar.gz
14:38:04 (896908): run_atlas exited; CPU time 290978.491387
14:38:04 (896908): called boinc_finish(0)

</stderr_txt>
]]>

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