Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:57:34 (1291174): wrapper (7.7.26015): starting
23:57:34 (1291174): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 23:57:34] Arguments: --nthreads 4
[2024-05-15 23:57:34] Threads: 4
[2024-05-15 23:57:34] Checking for CVMFS
[2024-05-15 23:57:34] No cvmfs_config command found, will try listing directly
[2024-05-15 23:57:34] CVMFS is ok
[2024-05-15 23:57:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 23:57:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 23:57:34] Further information can be found at the LHC@home message board.
[2024-05-15 23:57:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 23:57:34] Checking for apptainer binary...
[2024-05-15 23:57:34] which: no apptainer in ((null))
[2024-05-15 23:57:34] apptainer is not installed, using version from CVMFS
[2024-05-15 23:57:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 23:57:35] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2024-05-15 23:57:35] apptainer works
[2024-05-15 23:57:35] Set ATHENA_PROC_NUMBER=4
[2024-05-15 23:57:35] Set ATHENA_CORE_NUMBER=4
[2024-05-15 23:57:35] Starting ATLAS job with PandaID=6201795313
[2024-05-15 23:57:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 22:19:37]  *** The last 200 lines of the pilot log: ***
[2024-05-16 22:19:37] 2024-05-16 20:19:19,063 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-16 22:19:37] 2024-05-16 20:19:19,120 | INFO     | job 6201795313 has state=finished
[2024-05-16 22:19:37] 2024-05-16 20:19:19,121 | INFO     | preparing for final server update for job 6201795313 in state='finished'
[2024-05-16 22:19:37] 2024-05-16 20:19:19,121 | INFO     | this job has now completed (state=finished)
[2024-05-16 22:19:37] 2024-05-16 20:19:19,121 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-16 22:19:37] 2024-05-16 20:19:19,121 | INFO     | job 6201795313 has finished - writing final server update
[2024-05-16 22:19:37] 2024-05-16 20:19:19,122 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2386800/.job.ad'
[2024-05-16 22:19:37] 2024-05-16 20:19:19,122 | INFO     | total number of processed events: 1950 (read)
[2024-05-16 22:19:37] 2024-05-16 20:19:19,126 | INFO     | executing command: lscpu
[2024-05-16 22:19:37] 2024-05-16 20:19:19,169 | INFO     | found 32 cores (16 cores per socket, 2 sockets)
[2024-05-16 22:19:37] 2024-05-16 20:19:19,169 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-16 22:19:37] 2024-05-16 20:19:19,203 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-16 22:19:37] 2024-05-16 20:19:19,623 | INFO     | monitor loop #6057: job 0:6201795313 is in state 'finished'
[2024-05-16 22:19:37] 2024-05-16 20:19:19,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 22:19:37] 2024-05-16 20:19:22,126 | INFO     | monitor loop #6058: job 0:6201795313 is in state 'finished'
[2024-05-16 22:19:37] 2024-05-16 20:19:22,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 22:19:37] 2024-05-16 20:19:22,794 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-16 22:19:37] 2024-05-16 20:19:22,794 | INFO     | using path: /scratch/boinc/var/slot52/slots/1/PanDA_Pilot-6201795313/memory_monitor_summary.json (trf name=prmon)
[2024-05-16 22:19:37] 2024-05-16 20:19:22,796 | INFO     | extracted standard info from prmon json
[2024-05-16 22:19:37] 2024-05-16 20:19:22,796 | INFO     | extracted standard memory fields from prmon json
[2024-05-16 22:19:37] 2024-05-16 20:19:22,796 | WARNING  | GPU info not found in prmon json
[2024-05-16 22:19:37] 2024-05-16 20:19:22,808 | INFO     | fitting pss+swap vs Time
[2024-05-16 22:19:37] 2024-05-16 20:19:22,809 | INFO     | model: linear, x: [1715810290.0, 1715810351.0, 1715810412.0, 1715810473.0, 1715810534.0, 1715810595.0, 1715810656.0, 1715810717.0, 1715810778.0, 1715810839.0, 1715
[2024-05-16 22:19:37] 2024-05-16 20:19:22,809 | INFO     | sum of square deviations: 713181334690.0
[2024-05-16 22:19:37] 2024-05-16 20:19:22,831 | INFO     | sum of deviations: 2921249188285.4995
[2024-05-16 22:19:37] 2024-05-16 20:19:22,831 | INFO     | mean x: 1715850519.5
[2024-05-16 22:19:37] 2024-05-16 20:19:22,831 | INFO     | mean y: 2647588.54469697
[2024-05-16 22:19:37] 2024-05-16 20:19:22,831 | INFO     | -- intersect: -7025616744.098542
[2024-05-16 22:19:37] 2024-05-16 20:19:22,831 | INFO     | intersect: -7025616744.098542
[2024-05-16 22:19:37] 2024-05-16 20:19:22,832 | INFO     | chi2: 15.382904645940961
[2024-05-16 22:19:37] 2024-05-16 20:19:22,833 | INFO     | model: linear, x: [1715810290.0, 1715810351.0, 1715810412.0, 1715810473.0, 1715810534.0, 1715810595.0, 1715810656.0, 1715810717.0, 1715810778.0, 1715810839.0, 1715
[2024-05-16 22:19:37] 2024-05-16 20:19:22,833 | INFO     | sum of square deviations: 705107657730.0
[2024-05-16 22:19:37] 2024-05-16 20:19:22,854 | INFO     | sum of deviations: 3336614798433.0005
[2024-05-16 22:19:37] 2024-05-16 20:19:22,854 | INFO     | mean x: 1715850367.0
[2024-05-16 22:19:37] 2024-05-16 20:19:22,854 | INFO     | mean y: 2655433.2479087454
[2024-05-16 22:19:37] 2024-05-16 20:19:22,854 | INFO     | -- intersect: -8116858890.08279
[2024-05-16 22:19:37] 2024-05-16 20:19:22,854 | INFO     | intersect: -8116858890.08279
[2024-05-16 22:19:37] 2024-05-16 20:19:22,855 | INFO     | chi2: 12.21894534858625
[2024-05-16 22:19:37] 2024-05-16 20:19:22,856 | INFO     | current chi2=12.21894534858625 (change=20.568022556062427 %)
[2024-05-16 22:19:37] 2024-05-16 20:19:22,856 | INFO     | right removable region: 1314
[2024-05-16 22:19:37] 2024-05-16 20:19:22,856 | INFO     | model: linear, x: [1715810595.0, 1715810656.0, 1715810717.0, 1715810778.0, 1715810839.0, 1715810900.0, 1715810961.0, 1715811022.0, 1715811083.0, 1715811144.0, 1715
[2024-05-16 22:19:37] 2024-05-16 20:19:22,857 | INFO     | sum of square deviations: 705107657730.0
[2024-05-16 22:19:37] 2024-05-16 20:19:22,877 | INFO     | sum of deviations: 2521773561407.0
[2024-05-16 22:19:37] 2024-05-16 20:19:22,877 | INFO     | mean x: 1715850672.0
[2024-05-16 22:19:37] 2024-05-16 20:19:22,878 | INFO     | mean y: 2655131.808365019
[2024-05-16 22:19:37] 2024-05-16 20:19:22,878 | INFO     | -- intersect: -6133977781.670679
[2024-05-16 22:19:37] 2024-05-16 20:19:22,878 | INFO     | intersect: -6133977781.670679
[2024-05-16 22:19:37] 2024-05-16 20:19:22,878 | INFO     | chi2: 12.479172084277426
[2024-05-16 22:19:37] 2024-05-16 20:19:22,879 | INFO     | current chi2=12.479172084277426 (change=18.876360664627363 %)
[2024-05-16 22:19:37] 2024-05-16 20:19:22,879 | INFO     | left removable region: 10
[2024-05-16 22:19:37] 2024-05-16 20:19:22,879 | INFO     | model: linear, x: [1715810900.0, 1715810961.0, 1715811022.0, 1715811083.0, 1715811144.0, 1715811205.0, 1715811266.0, 1715811327.0, 1715811388.0, 1715811449.0, 1715
[2024-05-16 22:19:37] 2024-05-16 20:19:22,880 | INFO     | sum of square deviations: 687560538030.0
[2024-05-16 22:19:37] 2024-05-16 20:19:22,900 | INFO     | sum of deviations: 2688050444042.0005
[2024-05-16 22:19:37] 2024-05-16 20:19:22,901 | INFO     | mean x: 1715850641.5
[2024-05-16 22:19:37] 2024-05-16 20:19:22,901 | INFO     | mean y: 2670990.829754601
[2024-05-16 22:19:37] 2024-05-16 20:19:22,901 | INFO     | -- intersect: -6705528249.35494
[2024-05-16 22:19:37] 2024-05-16 20:19:22,901 | INFO     | intersect: -6705528249.35494
[2024-05-16 22:19:37] 2024-05-16 20:19:22,902 | INFO     | chi2: 6.789449987000544
[2024-05-16 22:19:37] 2024-05-16 20:19:22,902 | INFO     | -- intersect: -6705528249.35494
[2024-05-16 22:19:37] 2024-05-16 20:19:22,902 | INFO     | current memory leak: 3.91 B/s (using 1304 data points, chi2=6.79)
[2024-05-16 22:19:37] 2024-05-16 20:19:22,903 | INFO     | ..............................
[2024-05-16 22:19:37] 2024-05-16 20:19:22,903 | INFO     | . Timing measurements:
[2024-05-16 22:19:37] 2024-05-16 20:19:22,903 | INFO     | . get job = 0 s
[2024-05-16 22:19:37] 2024-05-16 20:19:22,903 | INFO     | . initial setup = 1 s
[2024-05-16 22:19:37] 2024-05-16 20:19:22,903 | INFO     | . payload setup = 7 s
[2024-05-16 22:19:37] 2024-05-16 20:19:22,903 | INFO     | . stage-in = 0 s
[2024-05-16 22:19:37] 2024-05-16 20:19:22,903 | INFO     | . payload execution = 80467 s
[2024-05-16 22:19:37] 2024-05-16 20:19:22,903 | INFO     | . stage-out = 2 s
[2024-05-16 22:19:37] 2024-05-16 20:19:22,903 | INFO     | . log creation = 0 s
[2024-05-16 22:19:37] 2024-05-16 20:19:22,903 | INFO     | ..............................
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | 
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | job summary report
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | --------------------------------------------------
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | PanDA job id: 6201795313
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | task id: 38734053
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | errors: (none)
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | pilot state: finished 
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | transexitcode: 0
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | exeerrorcode: 0
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | exeerrordiag: 
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | exitcode: 0
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | exitmsg: OK
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | cpuconsumptiontime: 315772 s
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | nevents: 1950
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | neventsw: 0
[2024-05-16 22:19:37] 2024-05-16 20:19:22,958 | INFO     | pid: 1303268
[2024-05-16 22:19:37] 2024-05-16 20:19:22,959 | INFO     | pgrp: 1303268
[2024-05-16 22:19:37] 2024-05-16 20:19:22,959 | INFO     | corecount: 4
[2024-05-16 22:19:37] 2024-05-16 20:19:22,959 | INFO     | event service: False
[2024-05-16 22:19:37] 2024-05-16 20:19:22,959 | INFO     | sizes: {0: 2392601, 4: 2392807, 11: 2392835, 80476: 2473517, 80479: 2482499, 80481: 2482555, 80485: 2482905}
[2024-05-16 22:19:37] 2024-05-16 20:19:22,959 | INFO     | --------------------------------------------------
[2024-05-16 22:19:37] 2024-05-16 20:19:22,959 | INFO     | 
[2024-05-16 22:19:37] 2024-05-16 20:19:22,959 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/1
[2024-05-16 22:19:37] 2024-05-16 20:19:22,974 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,974 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,974 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,974 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,974 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,974 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,974 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | job 6201795313 has completed (purged errors)
[2024-05-16 22:19:37] 2024-05-16 20:19:22,975 | INFO     | overall cleanup function is called
[2024-05-16 22:19:37] 2024-05-16 20:19:23,986 | INFO     | --- collectZombieJob: --- 10, [1303268]
[2024-05-16 22:19:37] 2024-05-16 20:19:23,986 | INFO     | zombie collector waiting for pid 1303268
[2024-05-16 22:19:37] 2024-05-16 20:19:23,986 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 22:19:37] 2024-05-16 20:19:24,991 | INFO     | collected zombie processes
[2024-05-16 22:19:37] 2024-05-16 20:19:24,991 | INFO     | will now attempt to kill all subprocesses of pid=1303268
[2024-05-16 22:19:37] 2024-05-16 20:19:25,147 | INFO     | process IDs to be killed: [1303268] (in reverse order)
[2024-05-16 22:19:37] 2024-05-16 20:19:25,261 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 22:19:37] 2024-05-16 20:19:25,261 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 22:19:37] 2024-05-16 20:19:25,269 | INFO     | did not find any defunct processes belonging to 1303268
[2024-05-16 22:19:37] 2024-05-16 20:19:25,276 | INFO     | did not find any defunct processes belonging to 1303268
[2024-05-16 22:19:37] 2024-05-16 20:19:25,276 | INFO     | ready for new job
[2024-05-16 22:19:37] 2024-05-16 20:19:25,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 22:19:37] 2024-05-16 20:19:25,281 | INFO     | *************************************
[2024-05-16 22:19:37] 2024-05-16 20:19:25,281 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 22:19:37] 2024-05-16 20:19:25,282 | INFO     | *************************************
[2024-05-16 22:19:37] 2024-05-16 20:19:25,282 | INFO     | 
[2024-05-16 22:19:37] 2024-05-16 20:19:25,285 | INFO     | architecture information:
[2024-05-16 22:19:37] 2024-05-16 20:19:25,285 | INFO     | executing command: cat /etc/os-release
[2024-05-16 22:19:37] 2024-05-16 20:19:25,299 | INFO     | cat /etc/os-release:
[2024-05-16 22:19:37] NAME="CentOS Linux"
[2024-05-16 22:19:37] VERSION="7 (Core)"
[2024-05-16 22:19:37] ID="centos"
[2024-05-16 22:19:37] ID_LIKE="rhel fedora"
[2024-05-16 22:19:37] VERSION_ID="7"
[2024-05-16 22:19:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 22:19:37] ANSI_COLOR="0;31"
[2024-05-16 22:19:37] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 22:19:37] HOME_URL="https://www.centos.org/"
[2024-05-16 22:19:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 22:19:37] 
[2024-05-16 22:19:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 22:19:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 22:19:37] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 22:19:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 22:19:37] 
[2024-05-16 22:19:37] 2024-05-16 20:19:25,299 | INFO     | *************************************
[2024-05-16 22:19:37] 2024-05-16 20:19:25,802 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/1
[2024-05-16 22:19:37] 2024-05-16 20:19:25,825 | INFO     | sufficient remaining disk space (552320630784 B)
[2024-05-16 22:19:37] 2024-05-16 20:19:25,825 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 22:19:37] 2024-05-16 20:19:25,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 22:19:37] 2024-05-16 20:19:25,826 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 22:19:37] 2024-05-16 20:19:25,826 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 22:19:37] 2024-05-16 20:19:25,826 | INFO     | aborting loop
[2024-05-16 22:19:37] 2024-05-16 20:19:26,006 | INFO     | all data control threads have been joined
[2024-05-16 22:19:37] 2024-05-16 20:19:26,721 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 22:19:37] 2024-05-16 20:19:26,721 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 22:19:37] 2024-05-16 20:19:26,721 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 22:19:37] 2024-05-16 20:19:26,830 | INFO     | [job] retrieve thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:26,831 | INFO     | [job] job monitor thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:27,011 | INFO     | [data] control thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:27,043 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:27,149 | INFO     | [payload] failed_post thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:27,227 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 22:19:37] 2024-05-16 20:19:27,288 | INFO     | all payload control threads have been joined
[2024-05-16 22:19:37] 2024-05-16 20:19:27,495 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:27,518 | INFO     | all job control threads have been joined
[2024-05-16 22:19:37] 2024-05-16 20:19:27,642 | INFO     | [job] validate thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:27,754 | INFO     | [payload] validate_post thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:27,886 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:27,924 | INFO     | [data] copytool_in thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:27,967 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 22:19:37] 2024-05-16 20:19:28,158 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:28,293 | INFO     | [payload] control thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:28,523 | INFO     | [job] control thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:28,972 | INFO     | [job] queue monitor thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:29,232 | INFO     | [data] copytool_out thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:29,831 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 22:19:37] 2024-05-16 20:19:31,292 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 46971246146624)>', '<ExcThread(monitor, started 46971417396992)>']
[2024-05-16 22:19:37] 2024-05-16 20:19:31,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 22:19:37] 2024-05-16 20:19:31,746 | INFO     | [monitor] control thread has ended
[2024-05-16 22:19:37] 2024-05-16 20:19:36,317 | INFO     | all workflow threads have been joined
[2024-05-16 22:19:37] 2024-05-16 20:19:36,317 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 22:19:37] 2024-05-16 20:19:36,317 | INFO     | traces error code: 0
[2024-05-16 22:19:37] 2024-05-16 20:19:36,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 22:19:37] 2024-05-16 20:19:36,424 [wrapper] ==== pilot stdout END ====
[2024-05-16 22:19:37] 2024-05-16 20:19:36,427 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 22:19:37] 2024-05-16 20:19:36,429 [wrapper] pilotpid: 1295542
[2024-05-16 22:19:37] 2024-05-16 20:19:36,431 [wrapper] Pilot exit status: 0
[2024-05-16 22:19:37] 2024-05-16 20:19:36,440 [wrapper] pandaids: 6201795313
[2024-05-16 22:19:37] 2024-05-16 20:19:36,523 [wrapper] cleanup: SIGTERM to supervisor_pilot  350220 1295543
[2024-05-16 22:19:37] 2024-05-16 20:19:36,526 [wrapper] Test setup, not cleaning
[2024-05-16 22:19:37] 2024-05-16 20:19:36,527 [wrapper] ==== wrapper stdout END ====
[2024-05-16 22:19:37] 2024-05-16 20:19:36,529 [wrapper] ==== wrapper stderr END ====
[2024-05-16 22:19:37] 2024-05-16 20:19:36,533 [wrapper] apfmon messages muted
[2024-05-16 22:19:37]  *** Error codes and diagnostics ***
[2024-05-16 22:19:37]     "exeErrorCode": 0,
[2024-05-16 22:19:37]     "exeErrorDiag": "",
[2024-05-16 22:19:37]     "pilotErrorCode": 0,
[2024-05-16 22:19:37]     "pilotErrorDiag": "",
[2024-05-16 22:19:37]  *** Listing of results directory ***
[2024-05-16 22:19:37] total 1515504
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc     467845 May 10 20:00 pilot3.tar.gz
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc       5633 May 10 20:02 queuedata.json
[2024-05-16 22:19:37] -rwx------ 1 boinc boinc      32251 May 10 20:02 runpilot2-wrapper.sh
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc        100 May 15 23:57 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 22:19:37] -rwxr-xr-x 1 boinc boinc       7986 May 15 23:57 run_atlas
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc        105 May 15 23:57 job.xml
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc       6663 May 15 23:57 init_data.xml
[2024-05-16 22:19:37] -rw-r--r-- 2 boinc boinc  330106347 May 15 23:57 EVNT.38734051._000944.pool.root.1
[2024-05-16 22:19:37] -rw-r--r-- 2 boinc boinc      17537 May 15 23:57 start_atlas.sh
[2024-05-16 22:19:37] drwxrwx--x 2 boinc boinc       4096 May 15 23:57 shared
[2024-05-16 22:19:37] -rw-r--r-- 2 boinc boinc     480167 May 15 23:57 input.tar.gz
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc          0 May 15 23:57 boinc_lockfile
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc       2853 May 15 23:57 pandaJob.out
[2024-05-16 22:19:37] -rw------- 1 boinc boinc        424 May 15 23:57 setup.sh.local
[2024-05-16 22:19:37] -rw------- 1 boinc boinc    1011331 May 15 23:57 agis_schedconf.cvmfs.json
[2024-05-16 22:19:37] -rw------- 1 boinc boinc    1324701 May 15 23:57 cric_ddmendpoints.json
[2024-05-16 22:19:37] drwx------ 4 boinc boinc       4096 May 15 23:57 pilot3
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc        533 May 16 22:10 boinc_task_state.xml
[2024-05-16 22:19:37] -rw------- 1 boinc boinc 1191327443 May 16 22:18 HITS.38734053._005152.pool.root.1
[2024-05-16 22:19:37] -rw------- 1 boinc boinc         95 May 16 22:18 pilot_heartbeat.json
[2024-05-16 22:19:37] -rw------- 1 boinc boinc       1067 May 16 22:19 memory_monitor_summary.json
[2024-05-16 22:19:37] -rw------- 1 boinc boinc          0 May 16 22:19 agis_ddmendpoints.agis.ALL.json
[2024-05-16 22:19:37] -rw------- 1 boinc boinc    2197427 May 16 22:19 log.38734053._005152.job.log.tgz.1
[2024-05-16 22:19:37] -rw------- 1 boinc boinc      27017 May 16 22:19 heartbeat.json
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc       8192 May 16 22:19 boinc_mmap_file
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc         29 May 16 22:19 wrapper_checkpoint.txt
[2024-05-16 22:19:37] -rw------- 1 boinc boinc       4221 May 16 22:19 pilotlog.txt
[2024-05-16 22:19:37] -rw------- 1 boinc boinc   11241740 May 16 22:19 log.38734053._005152.job.log.1
[2024-05-16 22:19:37] -rw------- 1 boinc boinc        353 May 16 22:19 output.list
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc        620 May 16 22:19 runtime_log
[2024-05-16 22:19:37] -rw------- 1 boinc boinc   13475840 May 16 22:19 result.tar.gz
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc      11410 May 16 22:19 runtime_log.err
[2024-05-16 22:19:37] -rw------- 1 boinc boinc        665 May 16 22:19 41WLDmpkjP5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmA2FKDmyOJFQn.diag
[2024-05-16 22:19:37] -rw-r--r-- 1 boinc boinc      21679 May 16 22:19 stderr.txt
[2024-05-16 22:19:37] HITS file was successfully produced:
[2024-05-16 22:19:37] -rw------- 1 boinc boinc 1191327443 May 16 22:18 shared/HITS.pool.root.1
[2024-05-16 22:19:37]  *** Contents of shared directory: ***
[2024-05-16 22:19:37] total 1499440
[2024-05-16 22:19:37] -rw-r--r-- 2 boinc boinc  330106347 May 15 23:57 ATLAS.root_0
[2024-05-16 22:19:37] -rw-r--r-- 2 boinc boinc      17537 May 15 23:57 start_atlas.sh
[2024-05-16 22:19:37] -rw-r--r-- 2 boinc boinc     480167 May 15 23:57 input.tar.gz
[2024-05-16 22:19:37] -rw------- 1 boinc boinc 1191327443 May 16 22:18 HITS.pool.root.1
[2024-05-16 22:19:37] -rw------- 1 boinc boinc   13475840 May 16 22:19 result.tar.gz
22:19:39 (1291174): run_atlas exited; CPU time 313282.343597
22:19:39 (1291174): called boinc_finish(0)

</stderr_txt>
]]>

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