Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:02:48 (1650326): wrapper (7.7.26015): starting
11:02:48 (1650326): wrapper: running run_atlas (--nthreads 4)
[2024-05-14 11:02:48] Arguments: --nthreads 4
[2024-05-14 11:02:48] Threads: 4
[2024-05-14 11:02:48] Checking for CVMFS
[2024-05-14 11:02:48] No cvmfs_config command found, will try listing directly
[2024-05-14 11:02:48] CVMFS is ok
[2024-05-14 11:02:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-14 11:02:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-14 11:02:48] Further information can be found at the LHC@home message board.
[2024-05-14 11:02:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-14 11:02:48] Checking for apptainer binary...
[2024-05-14 11:02:48] which: no apptainer in ((null))
[2024-05-14 11:02:48] apptainer is not installed, using version from CVMFS
[2024-05-14 11:02:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-14 11:02:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2024-05-14 11:02:49] apptainer works
[2024-05-14 11:02:49] Set ATHENA_PROC_NUMBER=4
[2024-05-14 11:02:49] Set ATHENA_CORE_NUMBER=4
[2024-05-14 11:02:49] Starting ATLAS job with PandaID=6201790180
[2024-05-14 11:02:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:28:37 (639376): wrapper (7.7.26015): starting
21:28:37 (639376): wrapper: running run_atlas (--nthreads 4)
[2024-05-14 21:28:37] Arguments: --nthreads 4
[2024-05-14 21:28:37] Threads: 4
[2024-05-14 21:28:37] This job has been restarted, cleaning up previous attempt
[2024-05-14 21:28:37] Checking for CVMFS
[2024-05-14 21:28:37] No cvmfs_config command found, will try listing directly
[2024-05-14 21:28:37] CVMFS is ok
[2024-05-14 21:28:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-14 21:28:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-14 21:28:37] Further information can be found at the LHC@home message board.
[2024-05-14 21:28:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-14 21:28:37] Checking for apptainer binary...
[2024-05-14 21:28:37] which: no apptainer in ((null))
[2024-05-14 21:28:37] apptainer is not installed, using version from CVMFS
[2024-05-14 21:28:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-14 21:28:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2024-05-14 21:28:38] apptainer works
[2024-05-14 21:28:38] Set ATHENA_PROC_NUMBER=4
[2024-05-14 21:28:38] Set ATHENA_CORE_NUMBER=4
[2024-05-14 21:28:38] Starting ATLAS job with PandaID=6201790180
[2024-05-14 21:28:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 16:17:59]  *** The last 200 lines of the pilot log: ***
[2024-05-15 16:17:59] 2024-05-15 14:17:33,080 | INFO     | preparing for final server update for job 6201790180 in state='finished'
[2024-05-15 16:17:59] 2024-05-15 14:17:33,080 | INFO     | this job has now completed (state=finished)
[2024-05-15 16:17:59] 2024-05-15 14:17:33,080 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-15 16:17:59] 2024-05-15 14:17:33,080 | INFO     | job 6201790180 has finished - writing final server update
[2024-05-15 16:17:59] 2024-05-15 14:17:33,081 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_607040/.job.ad'
[2024-05-15 16:17:59] 2024-05-15 14:17:33,081 | INFO     | total number of processed events: 1950 (read)
[2024-05-15 16:17:59] 2024-05-15 14:17:33,087 | INFO     | executing command: lscpu
[2024-05-15 16:17:59] 2024-05-15 14:17:33,157 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-05-15 16:17:59] 2024-05-15 14:17:33,157 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-15 16:17:59] 2024-05-15 14:17:33,205 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-15 16:17:59] 2024-05-15 14:17:33,905 | INFO     | monitor loop #5042: job 0:6201790180 is in state 'finished'
[2024-05-15 16:17:59] 2024-05-15 14:17:33,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 16:17:59] 2024-05-15 14:17:36,410 | INFO     | monitor loop #5043: job 0:6201790180 is in state 'finished'
[2024-05-15 16:17:59] 2024-05-15 14:17:36,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 16:17:59] 2024-05-15 14:17:37,088 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-15 16:17:59] 2024-05-15 14:17:37,089 | INFO     | using path: /scratch/boinc/var/slot72/slots/1/PanDA_Pilot-6201790180/memory_monitor_summary.json (trf name=prmon)
[2024-05-15 16:17:59] 2024-05-15 14:17:37,090 | INFO     | extracted standard info from prmon json
[2024-05-15 16:17:59] 2024-05-15 14:17:37,090 | INFO     | extracted standard memory fields from prmon json
[2024-05-15 16:17:59] 2024-05-15 14:17:37,090 | WARNING  | GPU info not found in prmon json
[2024-05-15 16:17:59] 2024-05-15 14:17:37,113 | INFO     | fitting pss+swap vs Time
[2024-05-15 16:17:59] 2024-05-15 14:17:37,114 | INFO     | model: linear, x: [1715714957.0, 1715715018.0, 1715715079.0, 1715715140.0, 1715715201.0, 1715715262.0, 1715715323.0, 1715715384.0, 1715715445.0, 1715715506.0, 1715
[2024-05-15 16:17:59] 2024-05-15 14:17:37,115 | INFO     | sum of square deviations: 424079235057.5
[2024-05-15 16:17:59] 2024-05-15 14:17:37,144 | INFO     | sum of deviations: 2337835308084.999
[2024-05-15 16:17:59] 2024-05-15 14:17:37,144 | INFO     | mean x: 1715748781.5
[2024-05-15 16:17:59] 2024-05-15 14:17:37,144 | INFO     | mean y: 2622260.4576576576
[2024-05-15 16:17:59] 2024-05-15 14:17:37,145 | INFO     | -- intersect: -9455841511.41425
[2024-05-15 16:17:59] 2024-05-15 14:17:37,145 | INFO     | intersect: -9455841511.41425
[2024-05-15 16:17:59] 2024-05-15 14:17:37,146 | INFO     | chi2: 15.159863145758715
[2024-05-15 16:17:59] 2024-05-15 14:17:37,148 | INFO     | model: linear, x: [1715714957.0, 1715715018.0, 1715715079.0, 1715715140.0, 1715715201.0, 1715715262.0, 1715715323.0, 1715715384.0, 1715715445.0, 1715715506.0, 1715
[2024-05-15 16:17:59] 2024-05-15 14:17:37,148 | INFO     | sum of square deviations: 418374207160.0
[2024-05-15 16:17:59] 2024-05-15 14:17:37,177 | INFO     | sum of deviations: 2677693663473.999
[2024-05-15 16:17:59] 2024-05-15 14:17:37,177 | INFO     | mean x: 1715748629.0
[2024-05-15 16:17:59] 2024-05-15 14:17:37,178 | INFO     | mean y: 2631346.104072398
[2024-05-15 16:17:59] 2024-05-15 14:17:37,178 | INFO     | -- intersect: -10978564801.655844
[2024-05-15 16:17:59] 2024-05-15 14:17:37,178 | INFO     | intersect: -10978564801.655844
[2024-05-15 16:17:59] 2024-05-15 14:17:37,179 | INFO     | chi2: 12.135389721150773
[2024-05-15 16:17:59] 2024-05-15 14:17:37,179 | INFO     | current chi2=12.135389721150773 (change=19.950532504998904 %)
[2024-05-15 16:17:59] 2024-05-15 14:17:37,179 | INFO     | right removable region: 1104
[2024-05-15 16:17:59] 2024-05-15 14:17:37,180 | INFO     | model: linear, x: [1715715262.0, 1715715323.0, 1715715384.0, 1715715445.0, 1715715506.0, 1715715567.0, 1715715628.0, 1715715689.0, 1715715750.0, 1715715811.0, 1715
[2024-05-15 16:17:59] 2024-05-15 14:17:37,180 | INFO     | sum of square deviations: 418374207160.0
[2024-05-15 16:17:59] 2024-05-15 14:17:37,200 | INFO     | sum of deviations: 1989547850268.9998
[2024-05-15 16:17:59] 2024-05-15 14:17:37,200 | INFO     | mean x: 1715748934.0
[2024-05-15 16:17:59] 2024-05-15 14:17:37,200 | INFO     | mean y: 2631567.7475113124
[2024-05-15 16:17:59] 2024-05-15 14:17:37,200 | INFO     | -- intersect: -8156486620.758716
[2024-05-15 16:17:59] 2024-05-15 14:17:37,200 | INFO     | intersect: -8156486620.758716
[2024-05-15 16:17:59] 2024-05-15 14:17:37,201 | INFO     | chi2: 11.965329079006503
[2024-05-15 16:17:59] 2024-05-15 14:17:37,201 | INFO     | current chi2=11.965329079006503 (change=21.07231467749726 %)
[2024-05-15 16:17:59] 2024-05-15 14:17:37,201 | INFO     | left removable region: 10
[2024-05-15 16:17:59] 2024-05-15 14:17:37,202 | INFO     | model: linear, x: [1715715567.0, 1715715628.0, 1715715689.0, 1715715750.0, 1715715811.0, 1715715872.0, 1715715933.0, 1715715994.0, 1715716055.0, 1715716116.0, 1715
[2024-05-15 16:17:59] 2024-05-15 14:17:37,203 | INFO     | sum of square deviations: 406003733357.5
[2024-05-15 16:17:59] 2024-05-15 14:17:37,221 | INFO     | sum of deviations: 2114565170647.5002
[2024-05-15 16:17:59] 2024-05-15 14:17:37,222 | INFO     | mean x: 1715748903.5
[2024-05-15 16:17:59] 2024-05-15 14:17:37,222 | INFO     | mean y: 2651226.386654479
[2024-05-15 16:17:59] 2024-05-15 14:17:37,222 | INFO     | -- intersect: -8933382053.196781
[2024-05-15 16:17:59] 2024-05-15 14:17:37,222 | INFO     | intersect: -8933382053.196781
[2024-05-15 16:17:59] 2024-05-15 14:17:37,223 | INFO     | chi2: 5.74032438249442
[2024-05-15 16:17:59] 2024-05-15 14:17:37,223 | INFO     | -- intersect: -8933382053.196781
[2024-05-15 16:17:59] 2024-05-15 14:17:37,223 | INFO     | current memory leak: 5.21 B/s (using 1094 data points, chi2=5.74)
[2024-05-15 16:17:59] 2024-05-15 14:17:37,224 | INFO     | ..............................
[2024-05-15 16:17:59] 2024-05-15 14:17:37,224 | INFO     | . Timing measurements:
[2024-05-15 16:17:59] 2024-05-15 14:17:37,224 | INFO     | . get job = 0 s
[2024-05-15 16:17:59] 2024-05-15 14:17:37,224 | INFO     | . initial setup = 1 s
[2024-05-15 16:17:59] 2024-05-15 14:17:37,224 | INFO     | . payload setup = 10 s
[2024-05-15 16:17:59] 2024-05-15 14:17:37,224 | INFO     | . stage-in = 0 s
[2024-05-15 16:17:59] 2024-05-15 14:17:37,224 | INFO     | . payload execution = 67691 s
[2024-05-15 16:17:59] 2024-05-15 14:17:37,224 | INFO     | . stage-out = 2 s
[2024-05-15 16:17:59] 2024-05-15 14:17:37,224 | INFO     | . log creation = 0 s
[2024-05-15 16:17:59] 2024-05-15 14:17:37,224 | INFO     | ..............................
[2024-05-15 16:17:59] 2024-05-15 14:17:37,453 | INFO     | 
[2024-05-15 16:17:59] 2024-05-15 14:17:37,453 | INFO     | job summary report
[2024-05-15 16:17:59] 2024-05-15 14:17:37,453 | INFO     | --------------------------------------------------
[2024-05-15 16:17:59] 2024-05-15 14:17:37,453 | INFO     | PanDA job id: 6201790180
[2024-05-15 16:17:59] 2024-05-15 14:17:37,453 | INFO     | task id: 38734053
[2024-05-15 16:17:59] 2024-05-15 14:17:37,453 | INFO     | errors: (none)
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | pilot state: finished 
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | transexitcode: 0
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | exeerrorcode: 0
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | exeerrordiag: 
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | exitcode: 0
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | exitmsg: OK
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | cpuconsumptiontime: 265055 s
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | nevents: 1950
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | neventsw: 0
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | pid: 735179
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | pgrp: 735179
[2024-05-15 16:17:59] 2024-05-15 14:17:37,454 | INFO     | corecount: 4
[2024-05-15 16:17:59] 2024-05-15 14:17:37,455 | INFO     | event service: False
[2024-05-15 16:17:59] 2024-05-15 14:17:37,455 | INFO     | sizes: {0: 2386090, 5: 2386296, 11: 2386352, 67704: 2460153, 67707: 2469135, 67710: 2469191, 67714: 2469541}
[2024-05-15 16:17:59] 2024-05-15 14:17:37,455 | INFO     | --------------------------------------------------
[2024-05-15 16:17:59] 2024-05-15 14:17:37,455 | INFO     | 
[2024-05-15 16:17:59] 2024-05-15 14:17:37,455 | INFO     | executing command: ls -lF /scratch/boinc/var/slot72/slots/1
[2024-05-15 16:17:59] 2024-05-15 14:17:37,476 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,476 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,477 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 16:17:59] 2024-05-15 14:17:37,478 | INFO     | job 6201790180 has completed (purged errors)
[2024-05-15 16:17:59] 2024-05-15 14:17:37,478 | INFO     | overall cleanup function is called
[2024-05-15 16:17:59] 2024-05-15 14:17:38,489 | INFO     | --- collectZombieJob: --- 10, [735179]
[2024-05-15 16:17:59] 2024-05-15 14:17:38,489 | INFO     | zombie collector waiting for pid 735179
[2024-05-15 16:17:59] 2024-05-15 14:17:38,489 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 16:17:59] 2024-05-15 14:17:39,495 | INFO     | collected zombie processes
[2024-05-15 16:17:59] 2024-05-15 14:17:39,495 | INFO     | will now attempt to kill all subprocesses of pid=735179
[2024-05-15 16:17:59] 2024-05-15 14:17:39,700 | INFO     | process IDs to be killed: [735179] (in reverse order)
[2024-05-15 16:17:59] 2024-05-15 14:17:39,906 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 16:17:59] 2024-05-15 14:17:39,906 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 16:17:59] 2024-05-15 14:17:39,923 | INFO     | did not find any defunct processes belonging to 735179
[2024-05-15 16:17:59] 2024-05-15 14:17:39,938 | INFO     | did not find any defunct processes belonging to 735179
[2024-05-15 16:17:59] 2024-05-15 14:17:39,938 | INFO     | ready for new job
[2024-05-15 16:17:59] 2024-05-15 14:17:39,938 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 16:17:59] 2024-05-15 14:17:39,943 | INFO     | *************************************
[2024-05-15 16:17:59] 2024-05-15 14:17:39,943 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 16:17:59] 2024-05-15 14:17:39,943 | INFO     | *************************************
[2024-05-15 16:17:59] 2024-05-15 14:17:39,943 | INFO     | 
[2024-05-15 16:17:59] 2024-05-15 14:17:39,950 | INFO     | architecture information:
[2024-05-15 16:17:59] 2024-05-15 14:17:39,950 | INFO     | executing command: cat /etc/os-release
[2024-05-15 16:17:59] 2024-05-15 14:17:39,970 | INFO     | cat /etc/os-release:
[2024-05-15 16:17:59] NAME="CentOS Linux"
[2024-05-15 16:17:59] VERSION="7 (Core)"
[2024-05-15 16:17:59] ID="centos"
[2024-05-15 16:17:59] ID_LIKE="rhel fedora"
[2024-05-15 16:17:59] VERSION_ID="7"
[2024-05-15 16:17:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 16:17:59] ANSI_COLOR="0;31"
[2024-05-15 16:17:59] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 16:17:59] HOME_URL="https://www.centos.org/"
[2024-05-15 16:17:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 16:17:59] 
[2024-05-15 16:17:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 16:17:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 16:17:59] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 16:17:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 16:17:59] 
[2024-05-15 16:17:59] 2024-05-15 14:17:39,970 | INFO     | *************************************
[2024-05-15 16:17:59] 2024-05-15 14:17:40,473 | INFO     | executing command: df -mP /scratch/boinc/var/slot72/slots/1
[2024-05-15 16:17:59] 2024-05-15 14:17:40,496 | INFO     | sufficient remaining disk space (3115821563904 B)
[2024-05-15 16:17:59] 2024-05-15 14:17:40,496 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 16:17:59] 2024-05-15 14:17:40,496 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 16:17:59] 2024-05-15 14:17:40,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 16:17:59] 2024-05-15 14:17:40,497 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-15 16:17:59] 2024-05-15 14:17:40,498 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 16:17:59] 2024-05-15 14:17:40,498 | INFO     | aborting loop
[2024-05-15 16:17:59] 2024-05-15 14:17:40,499 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 16:17:59] 2024-05-15 14:17:40,499 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 16:17:59] 2024-05-15 14:17:40,499 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 16:17:59] 2024-05-15 14:17:40,604 | INFO     | all data control threads have been joined
[2024-05-15 16:17:59] 2024-05-15 14:17:41,235 | INFO     | all payload control threads have been joined
[2024-05-15 16:17:59] 2024-05-15 14:17:41,501 | INFO     | [job] retrieve thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:41,504 | INFO     | [job] job monitor thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:41,609 | INFO     | [data] control thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:41,852 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:41,870 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:41,926 | INFO     | all job control threads have been joined
[2024-05-15 16:17:59] 2024-05-15 14:17:41,999 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:42,059 | INFO     | [job] validate thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:42,076 | INFO     | [data] copytool_in thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:42,240 | INFO     | [payload] control thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:42,300 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 16:17:59] 2024-05-15 14:17:42,504 | INFO     | [data] copytool_out thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:42,662 | INFO     | [payload] failed_post thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:42,931 | INFO     | [job] control thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:42,970 | INFO     | [payload] validate_post thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:43,304 | INFO     | [job] queue monitor thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:43,591 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 16:17:59] 2024-05-15 14:17:47,597 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:51,435 | INFO     | job.realtimelogging is not enabled
[2024-05-15 16:17:59] 2024-05-15 14:17:52,440 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 16:17:59] 2024-05-15 14:17:53,587 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47001661543488)>', '<ExcThread(monitor, started 47001838860032)>']
[2024-05-15 16:17:59] 2024-05-15 14:17:54,568 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 16:17:59] 2024-05-15 14:17:54,568 | INFO     | [monitor] control thread has ended
[2024-05-15 16:17:59] 2024-05-15 14:17:58,612 | INFO     | all workflow threads have been joined
[2024-05-15 16:17:59] 2024-05-15 14:17:58,612 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 16:17:59] 2024-05-15 14:17:58,613 | INFO     | traces error code: 0
[2024-05-15 16:17:59] 2024-05-15 14:17:58,613 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 16:17:59] 2024-05-15 14:17:58,695 [wrapper] ==== pilot stdout END ====
[2024-05-15 16:17:59] 2024-05-15 14:17:58,698 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 16:17:59] 2024-05-15 14:17:58,700 [wrapper] pilotpid: 651697
[2024-05-15 16:17:59] 2024-05-15 14:17:58,702 [wrapper] Pilot exit status: 0
[2024-05-15 16:17:59] 2024-05-15 14:17:58,710 [wrapper] pandaids: 6201790180 6201790180
[2024-05-15 16:17:59] 2024-05-15 14:17:58,804 [wrapper] cleanup: SIGTERM to supervisor_pilot 2139155 651698
[2024-05-15 16:17:59] 2024-05-15 14:17:58,807 [wrapper] Test setup, not cleaning
[2024-05-15 16:17:59] 2024-05-15 14:17:58,809 [wrapper] ==== wrapper stdout END ====
[2024-05-15 16:17:59] 2024-05-15 14:17:58,812 [wrapper] ==== wrapper stderr END ====
[2024-05-15 16:17:59] 2024-05-15 14:17:58,816 [wrapper] apfmon messages muted
[2024-05-15 16:17:59]  *** Error codes and diagnostics ***
[2024-05-15 16:17:59]     "exeErrorCode": 0,
[2024-05-15 16:17:59]     "exeErrorDiag": "",
[2024-05-15 16:17:59]     "pilotErrorCode": 0,
[2024-05-15 16:17:59]     "pilotErrorDiag": "",
[2024-05-15 16:17:59]  *** Listing of results directory ***
[2024-05-15 16:17:59] total 1826084
[2024-05-15 16:17:59] drwx------ 4 boinc boinc       4096 May  8 14:24 pilot3
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc     467845 May 10 20:00 pilot3.tar.gz
[2024-05-15 16:17:59] -rwx------ 1 boinc boinc      32251 May 10 20:02 runpilot2-wrapper.sh
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc       5633 May 10 20:02 queuedata.json
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc        100 May 14 11:02 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 16:17:59] -rwxr-xr-x 1 boinc boinc       7986 May 14 11:02 run_atlas
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc        105 May 14 11:02 job.xml
[2024-05-15 16:17:59] -rw-r--r-- 3 boinc boinc  329003431 May 14 11:02 EVNT.38734051._000917.pool.root.1
[2024-05-15 16:17:59] -rw-r--r-- 3 boinc boinc  329003431 May 14 11:02 ATLAS.root_0
[2024-05-15 16:17:59] -rw-r--r-- 2 boinc boinc      17537 May 14 11:02 start_atlas.sh
[2024-05-15 16:17:59] drwxrwx--x 2 boinc boinc       4096 May 14 11:02 shared
[2024-05-15 16:17:59] -rw-r--r-- 2 boinc boinc     480158 May 14 11:02 input.tar.gz
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc          0 May 14 11:02 boinc_lockfile
[2024-05-15 16:17:59] -rw------- 1 boinc boinc    1319809 May 14 11:03 cric_ddmendpoints.json
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc       2853 May 14 21:28 pandaJob.out
[2024-05-15 16:17:59] -rw------- 1 boinc boinc        424 May 14 21:28 setup.sh.local
[2024-05-15 16:17:59] -rw------- 1 boinc boinc    1008608 May 14 21:28 agis_schedconf.cvmfs.json
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc       6652 May 14 22:10 init_data.xml
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc        533 May 15 16:09 boinc_task_state.xml
[2024-05-15 16:17:59] -rw------- 1 boinc boinc 1181355620 May 15 16:17 HITS.38734053._005005.pool.root.1
[2024-05-15 16:17:59] -rw------- 1 boinc boinc       1053 May 15 16:17 memory_monitor_summary.json
[2024-05-15 16:17:59] -rw------- 1 boinc boinc          0 May 15 16:17 agis_ddmendpoints.agis.ALL.json
[2024-05-15 16:17:59] -rw------- 1 boinc boinc    2009817 May 15 16:17 log.38734053._005005.job.log.tgz.1
[2024-05-15 16:17:59] -rw------- 1 boinc boinc         96 May 15 16:17 pilot_heartbeat.json
[2024-05-15 16:17:59] -rw------- 1 boinc boinc      26904 May 15 16:17 heartbeat.json
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc       8192 May 15 16:17 boinc_mmap_file
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc         30 May 15 16:17 wrapper_checkpoint.txt
[2024-05-15 16:17:59] -rw------- 1 boinc boinc       4417 May 15 16:17 pilotlog.txt
[2024-05-15 16:17:59] -rw------- 1 boinc boinc   11476998 May 15 16:17 log.38734053._005005.job.log.1
[2024-05-15 16:17:59] -rw------- 1 boinc boinc        353 May 15 16:17 output.list
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc        620 May 15 16:17 runtime_log
[2024-05-15 16:17:59] -rw------- 1 boinc boinc   13527040 May 15 16:17 result.tar.gz
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc      11487 May 15 16:17 runtime_log.err
[2024-05-15 16:17:59] -rw------- 1 boinc boinc        777 May 15 16:17 AIhNDmjkjP5nsSi4apGgGQJmABFKDmABFKDm4ySLDmn1IKDmpyXoVn.diag
[2024-05-15 16:17:59] -rw-r--r-- 1 boinc boinc      23604 May 15 16:17 stderr.txt
[2024-05-15 16:17:59] HITS file was successfully produced:
[2024-05-15 16:17:59] -rw------- 1 boinc boinc 1181355620 May 15 16:17 shared/HITS.pool.root.1
[2024-05-15 16:17:59]  *** Contents of shared directory: ***
[2024-05-15 16:17:59] total 1488676
[2024-05-15 16:17:59] -rw-r--r-- 3 boinc boinc  329003431 May 14 11:02 ATLAS.root_0
[2024-05-15 16:17:59] -rw-r--r-- 2 boinc boinc      17537 May 14 11:02 start_atlas.sh
[2024-05-15 16:17:59] -rw-r--r-- 2 boinc boinc     480158 May 14 11:02 input.tar.gz
[2024-05-15 16:17:59] -rw------- 1 boinc boinc 1181355620 May 15 16:17 HITS.pool.root.1
[2024-05-15 16:17:59] -rw------- 1 boinc boinc   13527040 May 15 16:17 result.tar.gz
16:18:00 (639376): run_atlas exited; CPU time 262741.027158
16:18:00 (639376): called boinc_finish(0)

</stderr_txt>
]]>

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