Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:18:11 (2176973): wrapper (7.7.26015): starting
16:18:11 (2176973): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 16:18:11] Arguments: --nthreads 4
[2024-05-15 16:18:11] Threads: 4
[2024-05-15 16:18:11] Checking for CVMFS
[2024-05-15 16:18:11] No cvmfs_config command found, will try listing directly
[2024-05-15 16:18:11] CVMFS is ok
[2024-05-15 16:18:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 16:18:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 16:18:11] Further information can be found at the LHC@home message board.
[2024-05-15 16:18:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 16:18:11] Checking for apptainer binary...
[2024-05-15 16:18:11] which: no apptainer in ((null))
[2024-05-15 16:18:11] apptainer is not installed, using version from CVMFS
[2024-05-15 16:18:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 16:18:12] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2024-05-15 16:18:12] apptainer works
[2024-05-15 16:18:12] Set ATHENA_PROC_NUMBER=4
[2024-05-15 16:18:12] Set ATHENA_CORE_NUMBER=4
[2024-05-15 16:18:12] Starting ATLAS job with PandaID=6201789265
[2024-05-15 16:18:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 12:24:01]  *** The last 200 lines of the pilot log: ***
[2024-05-16 12:24:01] 2024-05-16 10:23:39,846 | INFO     | job 6201789265 has state=finished
[2024-05-16 12:24:01] 2024-05-16 10:23:39,847 | INFO     | preparing for final server update for job 6201789265 in state='finished'
[2024-05-16 12:24:01] 2024-05-16 10:23:39,847 | INFO     | this job has now completed (state=finished)
[2024-05-16 12:24:01] 2024-05-16 10:23:39,847 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-16 12:24:01] 2024-05-16 10:23:39,847 | INFO     | job 6201789265 has finished - writing final server update
[2024-05-16 12:24:01] 2024-05-16 10:23:39,848 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_607040/.job.ad'
[2024-05-16 12:24:01] 2024-05-16 10:23:39,848 | INFO     | total number of processed events: 1950 (read)
[2024-05-16 12:24:01] 2024-05-16 10:23:39,855 | INFO     | executing command: lscpu
[2024-05-16 12:24:01] 2024-05-16 10:23:39,908 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-05-16 12:24:01] 2024-05-16 10:23:39,909 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-16 12:24:01] 2024-05-16 10:23:39,953 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-16 12:24:01] 2024-05-16 10:23:40,380 | INFO     | monitor loop #5358: job 0:6201789265 is in state 'finished'
[2024-05-16 12:24:01] 2024-05-16 10:23:40,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 12:24:01] 2024-05-16 10:23:42,883 | INFO     | monitor loop #5359: job 0:6201789265 is in state 'finished'
[2024-05-16 12:24:01] 2024-05-16 10:23:42,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 12:24:01] 2024-05-16 10:23:45,139 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-16 12:24:01] 2024-05-16 10:23:45,140 | INFO     | using path: /scratch/boinc/var/slot72/slots/1/PanDA_Pilot-6201789265/memory_monitor_summary.json (trf name=prmon)
[2024-05-16 12:24:01] 2024-05-16 10:23:45,141 | INFO     | extracted standard info from prmon json
[2024-05-16 12:24:01] 2024-05-16 10:23:45,141 | INFO     | extracted standard memory fields from prmon json
[2024-05-16 12:24:01] 2024-05-16 10:23:45,141 | WARNING  | GPU info not found in prmon json
[2024-05-16 12:24:01] 2024-05-16 10:23:45,158 | INFO     | fitting pss+swap vs Time
[2024-05-16 12:24:01] 2024-05-16 10:23:45,160 | INFO     | model: linear, x: [1715782733.0, 1715782794.0, 1715782855.0, 1715782916.0, 1715782977.0, 1715783038.0, 1715783099.0, 1715783160.0, 1715783221.0, 1715783282.0, 1715
[2024-05-16 12:24:01] 2024-05-16 10:23:45,160 | INFO     | sum of square deviations: 515980353520.0
[2024-05-16 12:24:01] 2024-05-16 10:23:45,190 | INFO     | sum of deviations: 2351745909124.999
[2024-05-16 12:24:01] 2024-05-16 10:23:45,190 | INFO     | mean x: 1715818845.0
[2024-05-16 12:24:01] 2024-05-16 10:23:45,190 | INFO     | mean y: 2696484.8506329115
[2024-05-16 12:24:01] 2024-05-16 10:23:45,190 | INFO     | -- intersect: -7817698074.749441
[2024-05-16 12:24:01] 2024-05-16 10:23:45,190 | INFO     | intersect: -7817698074.749441
[2024-05-16 12:24:01] 2024-05-16 10:23:45,192 | INFO     | chi2: 14.885163627311012
[2024-05-16 12:24:01] 2024-05-16 10:23:45,193 | INFO     | model: linear, x: [1715782733.0, 1715782794.0, 1715782855.0, 1715782916.0, 1715782977.0, 1715783038.0, 1715783099.0, 1715783160.0, 1715783221.0, 1715783282.0, 1715
[2024-05-16 12:24:01] 2024-05-16 10:23:45,193 | INFO     | sum of square deviations: 509476473435.0
[2024-05-16 12:24:01] 2024-05-16 10:23:45,223 | INFO     | sum of deviations: 2720716840406.4995
[2024-05-16 12:24:01] 2024-05-16 10:23:45,223 | INFO     | mean x: 1715818692.5
[2024-05-16 12:24:01] 2024-05-16 10:23:45,223 | INFO     | mean y: 2705137.272033898
[2024-05-16 12:24:01] 2024-05-16 10:23:45,223 | INFO     | -- intersect: -9160145465.611784
[2024-05-16 12:24:01] 2024-05-16 10:23:45,223 | INFO     | intersect: -9160145465.611784
[2024-05-16 12:24:01] 2024-05-16 10:23:45,225 | INFO     | chi2: 11.944872312543323
[2024-05-16 12:24:01] 2024-05-16 10:23:45,225 | INFO     | current chi2=11.944872312543323 (change=19.753167572662083 %)
[2024-05-16 12:24:01] 2024-05-16 10:23:45,225 | INFO     | right removable region: 1179
[2024-05-16 12:24:01] 2024-05-16 10:23:45,226 | INFO     | model: linear, x: [1715783038.0, 1715783099.0, 1715783160.0, 1715783221.0, 1715783282.0, 1715783343.0, 1715783404.0, 1715783465.0, 1715783526.0, 1715783587.0, 1715
[2024-05-16 12:24:01] 2024-05-16 10:23:45,226 | INFO     | sum of square deviations: 509476473435.0
[2024-05-16 12:24:01] 2024-05-16 10:23:45,259 | INFO     | sum of deviations: 1971207639404.5005
[2024-05-16 12:24:01] 2024-05-16 10:23:45,259 | INFO     | mean x: 1715818997.5
[2024-05-16 12:24:01] 2024-05-16 10:23:45,259 | INFO     | mean y: 2705405.0279661017
[2024-05-16 12:24:01] 2024-05-16 10:23:45,259 | INFO     | -- intersect: -6635943663.3060665
[2024-05-16 12:24:01] 2024-05-16 10:23:45,259 | INFO     | intersect: -6635943663.3060665
[2024-05-16 12:24:01] 2024-05-16 10:23:45,260 | INFO     | chi2: 11.703564341785901
[2024-05-16 12:24:01] 2024-05-16 10:23:45,261 | INFO     | current chi2=11.703564341785901 (change=21.3742983630195 %)
[2024-05-16 12:24:01] 2024-05-16 10:23:45,261 | INFO     | left removable region: 10
[2024-05-16 12:24:01] 2024-05-16 10:23:45,262 | INFO     | model: linear, x: [1715783343.0, 1715783404.0, 1715783465.0, 1715783526.0, 1715783587.0, 1715783648.0, 1715783709.0, 1715783770.0, 1715783831.0, 1715783892.0, 1715
[2024-05-16 12:24:01] 2024-05-16 10:23:45,262 | INFO     | sum of square deviations: 495360804120.0
[2024-05-16 12:24:01] 2024-05-16 10:23:45,283 | INFO     | sum of deviations: 2091543430176.0
[2024-05-16 12:24:01] 2024-05-16 10:23:45,283 | INFO     | mean x: 1715818967.0
[2024-05-16 12:24:01] 2024-05-16 10:23:45,283 | INFO     | mean y: 2723795.748502994
[2024-05-16 12:24:01] 2024-05-16 10:23:45,283 | INFO     | -- intersect: -7241914572.794811
[2024-05-16 12:24:01] 2024-05-16 10:23:45,283 | INFO     | intersect: -7241914572.794811
[2024-05-16 12:24:01] 2024-05-16 10:23:45,284 | INFO     | chi2: 5.842911349272515
[2024-05-16 12:24:01] 2024-05-16 10:23:45,284 | INFO     | -- intersect: -7241914572.794811
[2024-05-16 12:24:01] 2024-05-16 10:23:45,284 | INFO     | current memory leak: 4.22 B/s (using 1169 data points, chi2=5.84)
[2024-05-16 12:24:01] 2024-05-16 10:23:45,285 | INFO     | ..............................
[2024-05-16 12:24:01] 2024-05-16 10:23:45,285 | INFO     | . Timing measurements:
[2024-05-16 12:24:01] 2024-05-16 10:23:45,285 | INFO     | . get job = 0 s
[2024-05-16 12:24:01] 2024-05-16 10:23:45,285 | INFO     | . initial setup = 1 s
[2024-05-16 12:24:01] 2024-05-16 10:23:45,285 | INFO     | . payload setup = 9 s
[2024-05-16 12:24:01] 2024-05-16 10:23:45,285 | INFO     | . stage-in = 0 s
[2024-05-16 12:24:01] 2024-05-16 10:23:45,285 | INFO     | . payload execution = 72282 s
[2024-05-16 12:24:01] 2024-05-16 10:23:45,286 | INFO     | . stage-out = 2 s
[2024-05-16 12:24:01] 2024-05-16 10:23:45,286 | INFO     | . log creation = 0 s
[2024-05-16 12:24:01] 2024-05-16 10:23:45,286 | INFO     | ..............................
[2024-05-16 12:24:01] 2024-05-16 10:23:45,348 | INFO     | 
[2024-05-16 12:24:01] 2024-05-16 10:23:45,349 | INFO     | job summary report
[2024-05-16 12:24:01] 2024-05-16 10:23:45,349 | INFO     | --------------------------------------------------
[2024-05-16 12:24:01] 2024-05-16 10:23:45,349 | INFO     | PanDA job id: 6201789265
[2024-05-16 12:24:01] 2024-05-16 10:23:45,349 | INFO     | task id: 38734053
[2024-05-16 12:24:01] 2024-05-16 10:23:45,349 | INFO     | errors: (none)
[2024-05-16 12:24:01] 2024-05-16 10:23:45,349 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 12:24:01] 2024-05-16 10:23:45,349 | INFO     | pilot state: finished 
[2024-05-16 12:24:01] 2024-05-16 10:23:45,349 | INFO     | transexitcode: 0
[2024-05-16 12:24:01] 2024-05-16 10:23:45,349 | INFO     | exeerrorcode: 0
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | exeerrordiag: 
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | exitcode: 0
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | exitmsg: OK
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | cpuconsumptiontime: 282736 s
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | nevents: 1950
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | neventsw: 0
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | pid: 2192896
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | pgrp: 2192896
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | corecount: 4
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | event service: False
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | sizes: {0: 2397049, 5: 2397255, 11: 2397311, 72296: 2474516, 72300: 2483498, 72302: 2483554, 72307: 2483904}
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | --------------------------------------------------
[2024-05-16 12:24:01] 2024-05-16 10:23:45,350 | INFO     | 
[2024-05-16 12:24:01] 2024-05-16 10:23:45,351 | INFO     | executing command: ls -lF /scratch/boinc/var/slot72/slots/1
[2024-05-16 12:24:01] 2024-05-16 10:23:45,380 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,381 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,381 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,381 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,381 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,381 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,381 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,381 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,381 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,381 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,381 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,382 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,382 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,382 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,382 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,382 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,382 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,382 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 12:24:01] 2024-05-16 10:23:45,382 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,382 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 12:24:01] 2024-05-16 10:23:45,382 | INFO     | job 6201789265 has completed (purged errors)
[2024-05-16 12:24:01] 2024-05-16 10:23:45,383 | INFO     | overall cleanup function is called
[2024-05-16 12:24:01] 2024-05-16 10:23:46,396 | INFO     | --- collectZombieJob: --- 10, [2192896]
[2024-05-16 12:24:01] 2024-05-16 10:23:46,396 | INFO     | zombie collector waiting for pid 2192896
[2024-05-16 12:24:01] 2024-05-16 10:23:46,396 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 12:24:01] 2024-05-16 10:23:47,401 | INFO     | collected zombie processes
[2024-05-16 12:24:01] 2024-05-16 10:23:47,401 | INFO     | will now attempt to kill all subprocesses of pid=2192896
[2024-05-16 12:24:01] 2024-05-16 10:23:47,658 | INFO     | process IDs to be killed: [2192896] (in reverse order)
[2024-05-16 12:24:01] 2024-05-16 10:23:47,836 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 12:24:01] 2024-05-16 10:23:47,837 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 12:24:01] 2024-05-16 10:23:47,851 | INFO     | did not find any defunct processes belonging to 2192896
[2024-05-16 12:24:01] 2024-05-16 10:23:47,861 | INFO     | did not find any defunct processes belonging to 2192896
[2024-05-16 12:24:01] 2024-05-16 10:23:47,861 | INFO     | ready for new job
[2024-05-16 12:24:01] 2024-05-16 10:23:47,861 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 12:24:01] 2024-05-16 10:23:47,866 | INFO     | *************************************
[2024-05-16 12:24:01] 2024-05-16 10:23:47,866 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 12:24:01] 2024-05-16 10:23:47,866 | INFO     | *************************************
[2024-05-16 12:24:01] 2024-05-16 10:23:47,866 | INFO     | 
[2024-05-16 12:24:01] 2024-05-16 10:23:47,871 | INFO     | architecture information:
[2024-05-16 12:24:01] 2024-05-16 10:23:47,872 | INFO     | executing command: cat /etc/os-release
[2024-05-16 12:24:01] 2024-05-16 10:23:47,889 | INFO     | cat /etc/os-release:
[2024-05-16 12:24:01] NAME="CentOS Linux"
[2024-05-16 12:24:01] VERSION="7 (Core)"
[2024-05-16 12:24:01] ID="centos"
[2024-05-16 12:24:01] ID_LIKE="rhel fedora"
[2024-05-16 12:24:01] VERSION_ID="7"
[2024-05-16 12:24:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 12:24:01] ANSI_COLOR="0;31"
[2024-05-16 12:24:01] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 12:24:01] HOME_URL="https://www.centos.org/"
[2024-05-16 12:24:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 12:24:01] 
[2024-05-16 12:24:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 12:24:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 12:24:01] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 12:24:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 12:24:01] 
[2024-05-16 12:24:01] 2024-05-16 10:23:47,889 | INFO     | *************************************
[2024-05-16 12:24:01] 2024-05-16 10:23:48,392 | INFO     | executing command: df -mP /scratch/boinc/var/slot72/slots/1
[2024-05-16 12:24:01] 2024-05-16 10:23:48,416 | INFO     | sufficient remaining disk space (3061173977088 B)
[2024-05-16 12:24:01] 2024-05-16 10:23:48,416 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 12:24:01] 2024-05-16 10:23:48,416 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 12:24:01] 2024-05-16 10:23:48,417 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-16 12:24:01] 2024-05-16 10:23:48,417 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 12:24:01] 2024-05-16 10:23:48,418 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 12:24:01] 2024-05-16 10:23:48,418 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 12:24:01] 2024-05-16 10:23:48,499 | INFO     | all data control threads have been joined
[2024-05-16 12:24:01] 2024-05-16 10:23:48,500 | INFO     | all payload control threads have been joined
[2024-05-16 12:24:01] 2024-05-16 10:23:48,571 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 12:24:01] 2024-05-16 10:23:48,902 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 12:24:01] 2024-05-16 10:23:48,902 | INFO     | aborting loop
[2024-05-16 12:24:01] 2024-05-16 10:23:49,421 | INFO     | [job] retrieve thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:49,443 | INFO     | all job control threads have been joined
[2024-05-16 12:24:01] 2024-05-16 10:23:49,504 | INFO     | [data] control thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:49,505 | INFO     | [payload] control thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:49,639 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:49,658 | INFO     | [payload] validate_post thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:49,883 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:49,907 | INFO     | [job] job monitor thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:49,977 | INFO     | [job] validate thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:50,210 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:50,358 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 12:24:01] 2024-05-16 10:23:50,360 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 12:24:01] 2024-05-16 10:23:50,448 | INFO     | [job] control thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:50,514 | INFO     | [data] copytool_in thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:50,549 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:50,576 | INFO     | [data] copytool_out thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:50,672 | INFO     | [payload] failed_post thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:51,359 | INFO     | [job] queue monitor thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:54,368 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 12:24:01] 2024-05-16 10:23:55,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47782679651392)>', '<ExcThread(monitor, started 47783394416384)>']
[2024-05-16 12:24:01] 2024-05-16 10:23:56,456 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 12:24:01] 2024-05-16 10:23:56,456 | INFO     | [monitor] control thread has ended
[2024-05-16 12:24:01] 2024-05-16 10:24:00,544 | INFO     | all workflow threads have been joined
[2024-05-16 12:24:01] 2024-05-16 10:24:00,544 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 12:24:01] 2024-05-16 10:24:00,544 | INFO     | traces error code: 0
[2024-05-16 12:24:01] 2024-05-16 10:24:00,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 12:24:01] 2024-05-16 10:24:00,633 [wrapper] ==== pilot stdout END ====
[2024-05-16 12:24:01] 2024-05-16 10:24:00,636 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 12:24:01] 2024-05-16 10:24:00,639 [wrapper] pilotpid: 2182045
[2024-05-16 12:24:01] 2024-05-16 10:24:00,642 [wrapper] Pilot exit status: 0
[2024-05-16 12:24:01] 2024-05-16 10:24:00,657 [wrapper] pandaids: 6201789265
[2024-05-16 12:24:01] 2024-05-16 10:24:00,773 [wrapper] cleanup: SIGTERM to supervisor_pilot 3969659 2182046
[2024-05-16 12:24:01] 2024-05-16 10:24:00,777 [wrapper] Test setup, not cleaning
[2024-05-16 12:24:01] 2024-05-16 10:24:00,784 [wrapper] ==== wrapper stdout END ====
[2024-05-16 12:24:01] 2024-05-16 10:24:00,786 [wrapper] ==== wrapper stderr END ====
[2024-05-16 12:24:01] 2024-05-16 10:24:00,791 [wrapper] apfmon messages muted
[2024-05-16 12:24:01]  *** Error codes and diagnostics ***
[2024-05-16 12:24:01]     "exeErrorCode": 0,
[2024-05-16 12:24:01]     "exeErrorDiag": "",
[2024-05-16 12:24:01]     "pilotErrorCode": 0,
[2024-05-16 12:24:01]     "pilotErrorDiag": "",
[2024-05-16 12:24:01]  *** Listing of results directory ***
[2024-05-16 12:24:01] total 1528812
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc       5633 May 10 20:00 queuedata.json
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc     467845 May 10 20:00 pilot3.tar.gz
[2024-05-16 12:24:01] -rwx------ 1 boinc boinc      32251 May 10 20:01 runpilot2-wrapper.sh
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc        100 May 15 16:18 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 12:24:01] -rwxr-xr-x 1 boinc boinc       7986 May 15 16:18 run_atlas
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc        105 May 15 16:18 job.xml
[2024-05-16 12:24:01] -rw-r--r-- 2 boinc boinc     480165 May 15 16:18 input.tar.gz
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc       6643 May 15 16:18 init_data.xml
[2024-05-16 12:24:01] -rw-r--r-- 2 boinc boinc  329797725 May 15 16:18 EVNT.38734051._000915.pool.root.1
[2024-05-16 12:24:01] -rw-r--r-- 2 boinc boinc      17537 May 15 16:18 start_atlas.sh
[2024-05-16 12:24:01] drwxrwx--x 2 boinc boinc       4096 May 15 16:18 shared
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc          0 May 15 16:18 boinc_lockfile
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc       2853 May 15 16:18 pandaJob.out
[2024-05-16 12:24:01] -rw------- 1 boinc boinc        424 May 15 16:18 setup.sh.local
[2024-05-16 12:24:01] -rw------- 1 boinc boinc    1010542 May 15 16:18 agis_schedconf.cvmfs.json
[2024-05-16 12:24:01] -rw------- 1 boinc boinc    1325758 May 15 16:18 cric_ddmendpoints.json
[2024-05-16 12:24:01] drwx------ 4 boinc boinc       4096 May 15 16:18 pilot3
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc        533 May 16 12:15 boinc_task_state.xml
[2024-05-16 12:24:01] -rw------- 1 boinc boinc 1203095156 May 16 12:23 HITS.38734053._004992.pool.root.1
[2024-05-16 12:24:01] -rw------- 1 boinc boinc         95 May 16 12:23 pilot_heartbeat.json
[2024-05-16 12:24:01] -rw------- 1 boinc boinc       1052 May 16 12:23 memory_monitor_summary.json
[2024-05-16 12:24:01] -rw------- 1 boinc boinc          0 May 16 12:23 agis_ddmendpoints.agis.ALL.json
[2024-05-16 12:24:01] -rw------- 1 boinc boinc    2072698 May 16 12:23 log.38734053._004992.job.log.tgz.1
[2024-05-16 12:24:01] -rw------- 1 boinc boinc      27970 May 16 12:23 heartbeat.json
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc         29 May 16 12:23 wrapper_checkpoint.txt
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc       8192 May 16 12:23 boinc_mmap_file
[2024-05-16 12:24:01] -rw------- 1 boinc boinc       4345 May 16 12:24 pilotlog.txt
[2024-05-16 12:24:01] -rw------- 1 boinc boinc   12445933 May 16 12:24 log.38734053._004992.job.log.1
[2024-05-16 12:24:01] -rw------- 1 boinc boinc        353 May 16 12:24 output.list
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc        620 May 16 12:24 runtime_log
[2024-05-16 12:24:01] -rw------- 1 boinc boinc   14561280 May 16 12:24 result.tar.gz
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc      11410 May 16 12:24 runtime_log.err
[2024-05-16 12:24:01] -rw------- 1 boinc boinc        666 May 16 12:24 liuMDmtjjP5n9Rq4apoT9bVoABFKDmABFKDmlqFKDms1FKDmnvY1xm.diag
[2024-05-16 12:24:01] -rw-r--r-- 1 boinc boinc      21698 May 16 12:24 stderr.txt
[2024-05-16 12:24:01] HITS file was successfully produced:
[2024-05-16 12:24:01] -rw------- 1 boinc boinc 1203095156 May 16 12:23 shared/HITS.pool.root.1
[2024-05-16 12:24:01]  *** Contents of shared directory: ***
[2024-05-16 12:24:01] total 1511692
[2024-05-16 12:24:01] -rw-r--r-- 2 boinc boinc     480165 May 15 16:18 input.tar.gz
[2024-05-16 12:24:01] -rw-r--r-- 2 boinc boinc  329797725 May 15 16:18 ATLAS.root_0
[2024-05-16 12:24:01] -rw-r--r-- 2 boinc boinc      17537 May 15 16:18 start_atlas.sh
[2024-05-16 12:24:01] -rw------- 1 boinc boinc 1203095156 May 16 12:23 HITS.pool.root.1
[2024-05-16 12:24:01] -rw------- 1 boinc boinc   14561280 May 16 12:24 result.tar.gz
12:24:03 (2176973): run_atlas exited; CPU time 280533.723521
12:24:03 (2176973): called boinc_finish(0)

</stderr_txt>
]]>

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