Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:44:04 (3178926): wrapper (7.7.26015): starting
07:44:04 (3178926): wrapper: running run_atlas (--nthreads 4)
[2024-05-14 07:44:04] Arguments: --nthreads 4
[2024-05-14 07:44:04] Threads: 4
[2024-05-14 07:44:04] Checking for CVMFS
[2024-05-14 07:44:04] No cvmfs_config command found, will try listing directly
[2024-05-14 07:44:04] CVMFS is ok
[2024-05-14 07:44:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-14 07:44:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-14 07:44:04] Further information can be found at the LHC@home message board.
[2024-05-14 07:44:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-14 07:44:04] Checking for apptainer binary...
[2024-05-14 07:44:04] which: no apptainer in ((null))
[2024-05-14 07:44:04] apptainer is not installed, using version from CVMFS
[2024-05-14 07:44:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-14 07:44:05] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2024-05-14 07:44:05] apptainer works
[2024-05-14 07:44:05] Set ATHENA_PROC_NUMBER=4
[2024-05-14 07:44:05] Set ATHENA_CORE_NUMBER=4
[2024-05-14 07:44:05] Starting ATLAS job with PandaID=6201775154
[2024-05-14 07:44:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:13:24 (2469868): wrapper (7.7.26015): starting
04:13:24 (2469868): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 04:13:24] Arguments: --nthreads 4
[2024-05-15 04:13:24] Threads: 4
[2024-05-15 04:13:24] This job has been restarted, cleaning up previous attempt
[2024-05-15 04:13:25] Checking for CVMFS
[2024-05-15 04:13:25] No cvmfs_config command found, will try listing directly
[2024-05-15 04:13:25] CVMFS is ok
[2024-05-15 04:13:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 04:13:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 04:13:25] Further information can be found at the LHC@home message board.
[2024-05-15 04:13:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 04:13:25] Checking for apptainer binary...
[2024-05-15 04:13:25] which: no apptainer in ((null))
[2024-05-15 04:13:25] apptainer is not installed, using version from CVMFS
[2024-05-15 04:13:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 04:13:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2024-05-15 04:13:26] apptainer works
[2024-05-15 04:13:26] Set ATHENA_PROC_NUMBER=4
[2024-05-15 04:13:26] Set ATHENA_CORE_NUMBER=4
[2024-05-15 04:13:26] Starting ATLAS job with PandaID=6201775154
[2024-05-15 04:13:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 00:31:31]  *** The last 200 lines of the pilot log: ***
[2024-05-16 00:31:31] 2024-05-15 22:31:13,051 | INFO     | job 6201775154 has state=finished
[2024-05-16 00:31:31] 2024-05-15 22:31:13,052 | INFO     | preparing for final server update for job 6201775154 in state='finished'
[2024-05-16 00:31:31] 2024-05-15 22:31:13,052 | INFO     | this job has now completed (state=finished)
[2024-05-16 00:31:31] 2024-05-15 22:31:13,052 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-16 00:31:31] 2024-05-15 22:31:13,052 | INFO     | job 6201775154 has finished - writing final server update
[2024-05-16 00:31:31] 2024-05-15 22:31:13,052 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2387485/.job.ad'
[2024-05-16 00:31:31] 2024-05-15 22:31:13,052 | INFO     | total number of processed events: 1950 (read)
[2024-05-16 00:31:31] 2024-05-15 22:31:13,056 | INFO     | executing command: lscpu
[2024-05-16 00:31:31] 2024-05-15 22:31:13,102 | INFO     | found 32 cores (16 cores per socket, 2 sockets)
[2024-05-16 00:31:31] 2024-05-15 22:31:13,102 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-16 00:31:31] 2024-05-15 22:31:13,133 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-16 00:31:31] 2024-05-15 22:31:14,986 | INFO     | monitor loop #5561: job 0:6201775154 is in state 'finished'
[2024-05-16 00:31:31] 2024-05-15 22:31:14,986 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 00:31:31] 2024-05-15 22:31:16,132 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-16 00:31:31] 2024-05-15 22:31:16,132 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6201775154/memory_monitor_summary.json (trf name=prmon)
[2024-05-16 00:31:31] 2024-05-15 22:31:16,133 | INFO     | extracted standard info from prmon json
[2024-05-16 00:31:31] 2024-05-15 22:31:16,133 | INFO     | extracted standard memory fields from prmon json
[2024-05-16 00:31:31] 2024-05-15 22:31:16,133 | WARNING  | GPU info not found in prmon json
[2024-05-16 00:31:31] 2024-05-15 22:31:16,144 | INFO     | fitting pss+swap vs Time
[2024-05-16 00:31:31] 2024-05-15 22:31:16,144 | INFO     | model: linear, x: [1715739238.0, 1715739299.0, 1715739360.0, 1715739421.0, 1715739482.0, 1715739543.0, 1715739604.0, 1715739665.0, 1715739726.0, 1715739787.0, 1715
[2024-05-16 00:31:31] 2024-05-15 22:31:16,145 | INFO     | sum of square deviations: 533148971239.5
[2024-05-16 00:31:31] 2024-05-15 22:31:16,162 | INFO     | sum of deviations: 2526930871982.0
[2024-05-16 00:31:31] 2024-05-15 22:31:16,162 | INFO     | mean x: 1715775746.5
[2024-05-16 00:31:31] 2024-05-15 22:31:16,162 | INFO     | mean y: 2622858.470784641
[2024-05-16 00:31:31] 2024-05-15 22:31:16,162 | INFO     | -- intersect: -8129525822.504842
[2024-05-16 00:31:31] 2024-05-15 22:31:16,162 | INFO     | intersect: -8129525822.504842
[2024-05-16 00:31:31] 2024-05-15 22:31:16,163 | INFO     | chi2: 15.81743997766731
[2024-05-16 00:31:31] 2024-05-15 22:31:16,164 | INFO     | model: linear, x: [1715739238.0, 1715739299.0, 1715739360.0, 1715739421.0, 1715739482.0, 1715739543.0, 1715739604.0, 1715739665.0, 1715739726.0, 1715739787.0, 1715
[2024-05-16 00:31:31] 2024-05-15 22:31:16,164 | INFO     | sum of square deviations: 526501302412.0
[2024-05-16 00:31:31] 2024-05-15 22:31:16,182 | INFO     | sum of deviations: 2897543962699.9966
[2024-05-16 00:31:31] 2024-05-15 22:31:16,182 | INFO     | mean x: 1715775594.0
[2024-05-16 00:31:31] 2024-05-15 22:31:16,182 | INFO     | mean y: 2631359.366303437
[2024-05-16 00:31:31] 2024-05-15 22:31:16,182 | INFO     | -- intersect: -9439957274.25564
[2024-05-16 00:31:31] 2024-05-15 22:31:16,182 | INFO     | intersect: -9439957274.25564
[2024-05-16 00:31:31] 2024-05-15 22:31:16,183 | INFO     | chi2: 12.699742076637694
[2024-05-16 00:31:31] 2024-05-15 22:31:16,183 | INFO     | current chi2=12.699742076637694 (change=19.710508814520566 %)
[2024-05-16 00:31:31] 2024-05-15 22:31:16,183 | INFO     | right removable region: 1192
[2024-05-16 00:31:31] 2024-05-15 22:31:16,184 | INFO     | model: linear, x: [1715739543.0, 1715739604.0, 1715739665.0, 1715739726.0, 1715739787.0, 1715739848.0, 1715739909.0, 1715739970.0, 1715740031.0, 1715740092.0, 1715
[2024-05-16 00:31:31] 2024-05-15 22:31:16,184 | INFO     | sum of square deviations: 526501302412.0
[2024-05-16 00:31:31] 2024-05-15 22:31:16,203 | INFO     | sum of deviations: 2152641851236.0002
[2024-05-16 00:31:31] 2024-05-15 22:31:16,203 | INFO     | mean x: 1715775899.0
[2024-05-16 00:31:31] 2024-05-15 22:31:16,204 | INFO     | mean y: 2631442.48030176
[2024-05-16 00:31:31] 2024-05-15 22:31:16,204 | INFO     | -- intersect: -7012452832.922417
[2024-05-16 00:31:31] 2024-05-15 22:31:16,204 | INFO     | intersect: -7012452832.922417
[2024-05-16 00:31:31] 2024-05-15 22:31:16,204 | INFO     | chi2: 12.665109095680856
[2024-05-16 00:31:31] 2024-05-15 22:31:16,204 | INFO     | current chi2=12.665109095680856 (change=19.929463215521842 %)
[2024-05-16 00:31:31] 2024-05-15 22:31:16,204 | INFO     | left removable region: 10
[2024-05-16 00:31:31] 2024-05-15 22:31:16,205 | INFO     | model: linear, x: [1715739848.0, 1715739909.0, 1715739970.0, 1715740031.0, 1715740092.0, 1715740153.0, 1715740214.0, 1715740275.0, 1715740336.0, 1715740397.0, 1715
[2024-05-16 00:31:31] 2024-05-15 22:31:16,205 | INFO     | sum of square deviations: 512071426275.5
[2024-05-16 00:31:31] 2024-05-15 22:31:16,222 | INFO     | sum of deviations: 2278376053252.4995
[2024-05-16 00:31:31] 2024-05-15 22:31:16,222 | INFO     | mean x: 1715775868.5
[2024-05-16 00:31:31] 2024-05-15 22:31:16,222 | INFO     | mean y: 2649337.0837563453
[2024-05-16 00:31:31] 2024-05-15 22:31:16,222 | INFO     | -- intersect: -7631408044.270163
[2024-05-16 00:31:31] 2024-05-15 22:31:16,222 | INFO     | intersect: -7631408044.270163
[2024-05-16 00:31:31] 2024-05-15 22:31:16,223 | INFO     | chi2: 6.6307159375429645
[2024-05-16 00:31:31] 2024-05-15 22:31:16,223 | INFO     | -- intersect: -7631408044.270163
[2024-05-16 00:31:31] 2024-05-15 22:31:16,223 | INFO     | current memory leak: 4.45 B/s (using 1182 data points, chi2=6.63)
[2024-05-16 00:31:31] 2024-05-15 22:31:16,224 | INFO     | ..............................
[2024-05-16 00:31:31] 2024-05-15 22:31:16,224 | INFO     | . Timing measurements:
[2024-05-16 00:31:31] 2024-05-15 22:31:16,224 | INFO     | . get job = 0 s
[2024-05-16 00:31:31] 2024-05-15 22:31:16,224 | INFO     | . initial setup = 0 s
[2024-05-16 00:31:31] 2024-05-15 22:31:16,224 | INFO     | . payload setup = 6 s
[2024-05-16 00:31:31] 2024-05-15 22:31:16,224 | INFO     | . stage-in = 0 s
[2024-05-16 00:31:31] 2024-05-15 22:31:16,224 | INFO     | . payload execution = 73032 s
[2024-05-16 00:31:31] 2024-05-15 22:31:16,224 | INFO     | . stage-out = 2 s
[2024-05-16 00:31:31] 2024-05-15 22:31:16,224 | INFO     | . log creation = 0 s
[2024-05-16 00:31:31] 2024-05-15 22:31:16,224 | INFO     | ..............................
[2024-05-16 00:31:31] 2024-05-15 22:31:16,655 | INFO     | 
[2024-05-16 00:31:31] 2024-05-15 22:31:16,655 | INFO     | job summary report
[2024-05-16 00:31:31] 2024-05-15 22:31:16,655 | INFO     | --------------------------------------------------
[2024-05-16 00:31:31] 2024-05-15 22:31:16,655 | INFO     | PanDA job id: 6201775154
[2024-05-16 00:31:31] 2024-05-15 22:31:16,655 | INFO     | task id: 38734053
[2024-05-16 00:31:31] 2024-05-15 22:31:16,655 | INFO     | errors: (none)
[2024-05-16 00:31:31] 2024-05-15 22:31:16,655 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 00:31:31] 2024-05-15 22:31:16,655 | INFO     | pilot state: finished 
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | transexitcode: 0
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | exeerrorcode: 0
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | exeerrordiag: 
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | exitcode: 0
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | exitmsg: OK
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | cpuconsumptiontime: 286148 s
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | nevents: 1950
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | neventsw: 0
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | pid: 2488617
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | pgrp: 2488617
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | corecount: 4
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | event service: False
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | sizes: {0: 2386930, 1: 2388477, 4: 2388715, 11: 2388743, 73042: 2466975, 73045: 2475029, 73048: 2475195}
[2024-05-16 00:31:31] 2024-05-15 22:31:16,656 | INFO     | --------------------------------------------------
[2024-05-16 00:31:31] 2024-05-15 22:31:16,657 | INFO     | 
[2024-05-16 00:31:31] 2024-05-15 22:31:16,657 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2024-05-16 00:31:31] 2024-05-15 22:31:16,676 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,677 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 00:31:31] 2024-05-15 22:31:16,678 | INFO     | job 6201775154 has completed (purged errors)
[2024-05-16 00:31:31] 2024-05-15 22:31:16,678 | INFO     | overall cleanup function is called
[2024-05-16 00:31:31] 2024-05-15 22:31:17,687 | INFO     | --- collectZombieJob: --- 10, [2488617]
[2024-05-16 00:31:31] 2024-05-15 22:31:17,687 | INFO     | zombie collector waiting for pid 2488617
[2024-05-16 00:31:31] 2024-05-15 22:31:17,688 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 00:31:31] 2024-05-15 22:31:18,693 | INFO     | collected zombie processes
[2024-05-16 00:31:31] 2024-05-15 22:31:18,693 | INFO     | will now attempt to kill all subprocesses of pid=2488617
[2024-05-16 00:31:31] 2024-05-15 22:31:18,842 | INFO     | process IDs to be killed: [2488617] (in reverse order)
[2024-05-16 00:31:31] 2024-05-15 22:31:18,952 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 00:31:31] 2024-05-15 22:31:18,952 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 00:31:31] 2024-05-15 22:31:18,962 | INFO     | did not find any defunct processes belonging to 2488617
[2024-05-16 00:31:31] 2024-05-15 22:31:18,971 | INFO     | did not find any defunct processes belonging to 2488617
[2024-05-16 00:31:31] 2024-05-15 22:31:18,971 | INFO     | ready for new job
[2024-05-16 00:31:31] 2024-05-15 22:31:18,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 00:31:31] 2024-05-15 22:31:18,978 | INFO     | *************************************
[2024-05-16 00:31:31] 2024-05-15 22:31:18,978 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 00:31:31] 2024-05-15 22:31:18,978 | INFO     | *************************************
[2024-05-16 00:31:31] 2024-05-15 22:31:18,978 | INFO     | 
[2024-05-16 00:31:31] 2024-05-15 22:31:18,982 | INFO     | architecture information:
[2024-05-16 00:31:31] 2024-05-15 22:31:18,983 | INFO     | executing command: cat /etc/os-release
[2024-05-16 00:31:31] 2024-05-15 22:31:18,999 | INFO     | cat /etc/os-release:
[2024-05-16 00:31:31] NAME="CentOS Linux"
[2024-05-16 00:31:31] VERSION="7 (Core)"
[2024-05-16 00:31:31] ID="centos"
[2024-05-16 00:31:31] ID_LIKE="rhel fedora"
[2024-05-16 00:31:31] VERSION_ID="7"
[2024-05-16 00:31:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 00:31:31] ANSI_COLOR="0;31"
[2024-05-16 00:31:31] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 00:31:31] HOME_URL="https://www.centos.org/"
[2024-05-16 00:31:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 00:31:31] 
[2024-05-16 00:31:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 00:31:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 00:31:31] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 00:31:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 00:31:31] 
[2024-05-16 00:31:31] 2024-05-15 22:31:19,000 | INFO     | *************************************
[2024-05-16 00:31:31] 2024-05-15 22:31:19,503 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2024-05-16 00:31:31] 2024-05-15 22:31:19,520 | INFO     | sufficient remaining disk space (587741528064 B)
[2024-05-16 00:31:31] 2024-05-15 22:31:19,521 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 00:31:31] 2024-05-15 22:31:19,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 00:31:31] 2024-05-15 22:31:19,521 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 00:31:31] 2024-05-15 22:31:19,521 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-16 00:31:31] 2024-05-15 22:31:19,522 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 00:31:31] 2024-05-15 22:31:19,522 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 00:31:31] 2024-05-15 22:31:19,522 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 00:31:31] 2024-05-15 22:31:19,781 | INFO     | all payload control threads have been joined
[2024-05-16 00:31:31] 2024-05-15 22:31:19,912 | INFO     | all job control threads have been joined
[2024-05-16 00:31:31] 2024-05-15 22:31:19,997 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-16 00:31:31] 2024-05-15 22:31:19,997 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-16 00:31:31] 2024-05-15 22:31:19,997 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 00:31:31] 2024-05-15 22:31:19,997 | INFO     | will abort loop
[2024-05-16 00:31:31] 2024-05-15 22:31:20,036 | INFO     | all data control threads have been joined
[2024-05-16 00:31:31] 2024-05-15 22:31:20,526 | INFO     | [job] retrieve thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:20,535 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:20,545 | INFO     | [payload] failed_post thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:20,725 | INFO     | [payload] validate_post thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:20,743 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:20,786 | INFO     | [payload] control thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:20,917 | INFO     | [job] control thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:21,002 | INFO     | [job] job monitor thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:21,010 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 00:31:31] 2024-05-15 22:31:21,042 | INFO     | [data] control thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:21,288 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 00:31:31] 2024-05-15 22:31:21,388 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:21,399 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:21,670 | INFO     | [data] copytool_in thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:21,712 | INFO     | [job] validate thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:22,293 | INFO     | [job] queue monitor thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:23,015 | INFO     | [data] copytool_out thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:23,526 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 00:31:31] 2024-05-15 22:31:25,034 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47251184211008)>', '<ExcThread(monitor, started 47251692988160)>']
[2024-05-16 00:31:31] 2024-05-15 22:31:25,551 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 00:31:31] 2024-05-15 22:31:25,551 | INFO     | [monitor] control thread has ended
[2024-05-16 00:31:31] 2024-05-15 22:31:30,059 | INFO     | all workflow threads have been joined
[2024-05-16 00:31:31] 2024-05-15 22:31:30,059 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 00:31:31] 2024-05-15 22:31:30,059 | INFO     | traces error code: 0
[2024-05-16 00:31:31] 2024-05-15 22:31:30,060 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 00:31:31] 2024-05-15 22:31:30,133 [wrapper] ==== pilot stdout END ====
[2024-05-16 00:31:31] 2024-05-15 22:31:30,135 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 00:31:31] 2024-05-15 22:31:30,137 [wrapper] pilotpid: 2474426
[2024-05-16 00:31:31] 2024-05-15 22:31:30,140 [wrapper] Pilot exit status: 0
[2024-05-16 00:31:31] 2024-05-15 22:31:30,147 [wrapper] pandaids: 6201775154 6201775154
[2024-05-16 00:31:31] 2024-05-15 22:31:30,222 [wrapper] cleanup: SIGTERM to supervisor_pilot 1415745 2474427
[2024-05-16 00:31:31] 2024-05-15 22:31:30,225 [wrapper] Test setup, not cleaning
[2024-05-16 00:31:31] 2024-05-15 22:31:30,229 [wrapper] ==== wrapper stdout END ====
[2024-05-16 00:31:31] 2024-05-15 22:31:30,231 [wrapper] ==== wrapper stderr END ====
[2024-05-16 00:31:31] 2024-05-15 22:31:30,235 [wrapper] apfmon messages muted
[2024-05-16 00:31:31]  *** Error codes and diagnostics ***
[2024-05-16 00:31:31]     "exeErrorCode": 0,
[2024-05-16 00:31:31]     "exeErrorDiag": "",
[2024-05-16 00:31:31]     "pilotErrorCode": 0,
[2024-05-16 00:31:31]     "pilotErrorDiag": "",
[2024-05-16 00:31:31]  *** Listing of results directory ***
[2024-05-16 00:31:31] total 2485948
[2024-05-16 00:31:31] drwx------ 4 boinc boinc       4096 May  8 14:24 pilot3
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc     467845 May 10 19:45 pilot3.tar.gz
[2024-05-16 00:31:31] -rwx------ 1 boinc boinc      32251 May 10 19:48 runpilot2-wrapper.sh
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc       5633 May 10 19:48 queuedata.json
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc        100 May 14 07:43 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 00:31:31] -rwxr-xr-x 1 boinc boinc       7986 May 14 07:43 run_atlas
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc        105 May 14 07:43 job.xml
[2024-05-16 00:31:31] -rw-r--r-- 3 boinc boinc  328124580 May 14 07:44 EVNT.38734051._000715.pool.root.1
[2024-05-16 00:31:31] -rw-r--r-- 3 boinc boinc  328124580 May 14 07:44 ATLAS.root_0
[2024-05-16 00:31:31] -rw-r--r-- 3 boinc boinc  328300632 May 14 07:44 EVNT.38734051._000716.pool.root.1
[2024-05-16 00:31:31] -rw-r--r-- 3 boinc boinc  328300632 May 14 07:44 ATLAS.root_1
[2024-05-16 00:31:31] -rw-r--r-- 2 boinc boinc      17587 May 14 07:44 start_atlas.sh
[2024-05-16 00:31:31] drwxrwx--x 2 boinc boinc       4096 May 14 07:44 shared
[2024-05-16 00:31:31] -rw-r--r-- 2 boinc boinc     480248 May 14 07:44 input.tar.gz
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc          0 May 14 07:44 boinc_lockfile
[2024-05-16 00:31:31] -rw------- 1 boinc boinc    1319809 May 14 07:44 cric_ddmendpoints.json
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc       3369 May 15 04:13 pandaJob.out
[2024-05-16 00:31:31] -rw------- 1 boinc boinc        424 May 15 04:13 setup.sh.local
[2024-05-16 00:31:31] -rw------- 1 boinc boinc    1008608 May 15 04:13 agis_schedconf.cvmfs.json
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc       6672 May 15 04:51 init_data.xml
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc        534 May 16 00:22 boinc_task_state.xml
[2024-05-16 00:31:31] -rw------- 1 boinc boinc 1198941381 May 16 00:30 HITS.38734053._004637.pool.root.1
[2024-05-16 00:31:31] -rw------- 1 boinc boinc         97 May 16 00:30 pilot_heartbeat.json
[2024-05-16 00:31:31] -rw------- 1 boinc boinc       1060 May 16 00:31 memory_monitor_summary.json
[2024-05-16 00:31:31] -rw------- 1 boinc boinc          0 May 16 00:31 agis_ddmendpoints.agis.ALL.json
[2024-05-16 00:31:31] -rw------- 1 boinc boinc    2123971 May 16 00:31 log.38734053._004637.job.log.tgz.1
[2024-05-16 00:31:31] -rw------- 1 boinc boinc      27943 May 16 00:31 heartbeat.json
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc       8192 May 16 00:31 boinc_mmap_file
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc         30 May 16 00:31 wrapper_checkpoint.txt
[2024-05-16 00:31:31] -rw------- 1 boinc boinc       4530 May 16 00:31 pilotlog.txt
[2024-05-16 00:31:31] -rw------- 1 boinc boinc   12996869 May 16 00:31 log.38734053._004637.job.log.1
[2024-05-16 00:31:31] -rw------- 1 boinc boinc        353 May 16 00:31 output.list
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc        620 May 16 00:31 runtime_log
[2024-05-16 00:31:31] -rw------- 1 boinc boinc   15155200 May 16 00:31 result.tar.gz
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc      11616 May 16 00:31 runtime_log.err
[2024-05-16 00:31:31] -rw------- 1 boinc boinc        778 May 16 00:31 1ibKDmNXjP5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmFzFKDmCiJjSo.diag
[2024-05-16 00:31:31] -rw-r--r-- 1 boinc boinc      23579 May 16 00:31 stderr.txt
[2024-05-16 00:31:31] HITS file was successfully produced:
[2024-05-16 00:31:31] -rw------- 1 boinc boinc 1198941381 May 16 00:30 shared/HITS.pool.root.1
[2024-05-16 00:31:31]  *** Contents of shared directory: ***
[2024-05-16 00:31:31] total 1827192
[2024-05-16 00:31:31] -rw-r--r-- 3 boinc boinc  328124580 May 14 07:44 ATLAS.root_0
[2024-05-16 00:31:31] -rw-r--r-- 3 boinc boinc  328300632 May 14 07:44 ATLAS.root_1
[2024-05-16 00:31:31] -rw-r--r-- 2 boinc boinc      17587 May 14 07:44 start_atlas.sh
[2024-05-16 00:31:31] -rw-r--r-- 2 boinc boinc     480248 May 14 07:44 input.tar.gz
[2024-05-16 00:31:31] -rw------- 1 boinc boinc 1198941381 May 16 00:30 HITS.pool.root.1
[2024-05-16 00:31:31] -rw------- 1 boinc boinc   15155200 May 16 00:31 result.tar.gz
00:31:32 (2469868): run_atlas exited; CPU time 283828.870060
00:31:32 (2469868): called boinc_finish(0)

</stderr_txt>
]]>

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