Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
22:48:28 (13879): wrapper (7.7.26015): starting
22:48:28 (13879): wrapper: running run_atlas (--nthreads 12)
[2024-05-14 22:48:28] Arguments: --nthreads 12
[2024-05-14 22:48:28] Threads: 12
[2024-05-14 22:48:28] Checking for CVMFS
[2024-05-14 22:48:31] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-14 22:48:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-14 22:48:33] Running cvmfs_config stat atlas.cern.ch
[2024-05-14 22:48:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-14 22:48:39] 2.10.1.0 187695 16658 168096 132749 2 543 25518641 45568001 20587 130560 0 64795639 99.845 25057681 18102 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2024-05-14 22:48:39] CVMFS is ok
[2024-05-14 22:48:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-14 22:48:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-14 22:48:40] Further information can be found at the LHC@home message board.
[2024-05-14 22:48:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-14 22:48:40] Checking for apptainer binary...
[2024-05-14 22:48:40] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-14 22:48:40] Running /usr/bin/apptainer --version
[2024-05-14 22:48:42] apptainer version 1.1.8-1.el7
[2024-05-14 22:48:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-14 22:48:46] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0134.triumf.lcg
[2024-05-14 22:48:46] apptainer works
[2024-05-14 22:48:46] Set ATHENA_PROC_NUMBER=12
[2024-05-14 22:48:46] Set ATHENA_CORE_NUMBER=12
[2024-05-14 22:48:46] Starting ATLAS job with PandaID=6201775152
[2024-05-14 22:48:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 06:31:40]  *** The last 200 lines of the pilot log: ***
[2024-05-17 06:31:40] 2024-05-17 13:31:19,480 | INFO     | preparing for final server update for job 6201775152 in state='finished'
[2024-05-17 06:31:40] 2024-05-17 13:31:19,480 | INFO     | this job has now completed (state=finished)
[2024-05-17 06:31:40] 2024-05-17 13:31:19,481 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 06:31:40] 2024-05-17 13:31:19,481 | INFO     | job 6201775152 has finished - writing final server update
[2024-05-17 06:31:40] 2024-05-17 13:31:19,481 | INFO     | total number of processed events: 1950 (read)
[2024-05-17 06:31:40] 2024-05-17 13:31:19,484 | INFO     | executing command: lscpu
[2024-05-17 06:31:40] 2024-05-17 13:31:19,531 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 06:31:40] 2024-05-17 13:31:19,532 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 06:31:40] 2024-05-17 13:31:19,581 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 06:31:40] 2024-05-17 13:31:20,203 | INFO     | monitor loop #5676: job 0:6201775152 is in state 'finished'
[2024-05-17 06:31:40] 2024-05-17 13:31:20,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 06:31:40] 2024-05-17 13:31:22,707 | INFO     | monitor loop #5677: job 0:6201775152 is in state 'finished'
[2024-05-17 06:31:40] 2024-05-17 13:31:22,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 06:31:40] 2024-05-17 13:31:24,784 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 06:31:40] 2024-05-17 13:31:24,785 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6201775152/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 06:31:40] 2024-05-17 13:31:24,787 | INFO     | extracted standard info from prmon json
[2024-05-17 06:31:40] 2024-05-17 13:31:24,787 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 06:31:40] 2024-05-17 13:31:24,787 | WARNING  | GPU info not found in prmon json
[2024-05-17 06:31:40] 2024-05-17 13:31:24,830 | INFO     | fitting pss+swap vs Time
[2024-05-17 06:31:40] 2024-05-17 13:31:24,833 | INFO     | model: linear, x: [1715752646.0, 1715752707.0, 1715752768.0, 1715752829.0, 1715752891.0, 1715752951.0, 1715753013.0, 1715753076.0, 1715753134.0, 1715753196.0, 1715
[2024-05-17 06:31:40] 2024-05-17 13:31:24,834 | INFO     | sum of square deviations: 10470885051825.855
[2024-05-17 06:31:40] 2024-05-17 13:31:24,996 | INFO     | sum of deviations: 47657520313707.0
[2024-05-17 06:31:40] 2024-05-17 13:31:24,996 | INFO     | mean x: 1715853513.8483183
[2024-05-17 06:31:40] 2024-05-17 13:31:24,996 | INFO     | mean y: 3768797.528460543
[2024-05-17 06:31:40] 2024-05-17 13:31:24,996 | INFO     | -- intersect: -7805821632.2043705
[2024-05-17 06:31:40] 2024-05-17 13:31:24,996 | INFO     | intersect: -7805821632.2043705
[2024-05-17 06:31:40] 2024-05-17 13:31:24,999 | INFO     | chi2: 44.50044793973102
[2024-05-17 06:31:40] 2024-05-17 13:31:25,001 | INFO     | model: linear, x: [1715752646.0, 1715752707.0, 1715752768.0, 1715752829.0, 1715752891.0, 1715752951.0, 1715753013.0, 1715753076.0, 1715753134.0, 1715753196.0, 1715
[2024-05-17 06:31:40] 2024-05-17 13:31:25,002 | INFO     | sum of square deviations: 10421771730272.422
[2024-05-17 06:31:40] 2024-05-17 13:31:25,162 | INFO     | sum of deviations: 49191641947453.7
[2024-05-17 06:31:40] 2024-05-17 13:31:25,162 | INFO     | mean x: 1715853353.4512472
[2024-05-17 06:31:40] 2024-05-17 13:31:25,162 | INFO     | mean y: 3773807.547133139
[2024-05-17 06:31:40] 2024-05-17 13:31:25,162 | INFO     | -- intersect: -8095198803.044209
[2024-05-17 06:31:40] 2024-05-17 13:31:25,162 | INFO     | intersect: -8095198803.044209
[2024-05-17 06:31:40] 2024-05-17 13:31:25,165 | INFO     | chi2: 41.041927497305146
[2024-05-17 06:31:40] 2024-05-17 13:31:25,165 | INFO     | current chi2=41.041927497305146 (change=7.771877818196131 %)
[2024-05-17 06:31:40] 2024-05-17 13:31:25,165 | INFO     | right removable region: 3086
[2024-05-17 06:31:40] 2024-05-17 13:31:25,167 | INFO     | model: linear, x: [1715752951.0, 1715753013.0, 1715753076.0, 1715753134.0, 1715753196.0, 1715753256.0, 1715753317.0, 1715753382.0, 1715753440.0, 1715753500.0, 1715
[2024-05-17 06:31:40] 2024-05-17 13:31:25,168 | INFO     | sum of square deviations: 10420054389094.99
[2024-05-17 06:31:40] 2024-05-17 13:31:25,216 | INFO     | monitor loop #5678: job 0:6201775152 is in state 'finished'
[2024-05-17 06:31:40] 2024-05-17 13:31:25,227 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 06:31:40] 2024-05-17 13:31:25,329 | INFO     | sum of deviations: 45775730652963.67
[2024-05-17 06:31:40] 2024-05-17 13:31:25,330 | INFO     | mean x: 1715853677.0255911
[2024-05-17 06:31:40] 2024-05-17 13:31:25,330 | INFO     | mean y: 3774838.409459022
[2024-05-17 06:31:40] 2024-05-17 13:31:25,330 | INFO     | -- intersect: -7534041455.680208
[2024-05-17 06:31:40] 2024-05-17 13:31:25,330 | INFO     | intersect: -7534041455.680208
[2024-05-17 06:31:40] 2024-05-17 13:31:25,332 | INFO     | chi2: 39.31246599490883
[2024-05-17 06:31:40] 2024-05-17 13:31:25,332 | INFO     | current chi2=39.31246599490883 (change=11.658269040007218 %)
[2024-05-17 06:31:40] 2024-05-17 13:31:25,332 | INFO     | left removable region: 10
[2024-05-17 06:31:40] 2024-05-17 13:31:25,335 | INFO     | model: linear, x: [1715753256.0, 1715753317.0, 1715753382.0, 1715753440.0, 1715753500.0, 1715753561.0, 1715753622.0, 1715753683.0, 1715753745.0, 1715753806.0, 1715
[2024-05-17 06:31:40] 2024-05-17 13:31:25,335 | INFO     | sum of square deviations: 10310836103682.8
[2024-05-17 06:31:40] 2024-05-17 13:31:25,493 | INFO     | sum of deviations: 45848673882124.016
[2024-05-17 06:31:40] 2024-05-17 13:31:25,493 | INFO     | mean x: 1715853647.7675552
[2024-05-17 06:31:40] 2024-05-17 13:31:25,494 | INFO     | mean y: 3786547.335825748
[2024-05-17 06:31:40] 2024-05-17 13:31:25,494 | INFO     | -- intersect: -7626013163.848458
[2024-05-17 06:31:40] 2024-05-17 13:31:25,494 | INFO     | intersect: -7626013163.848458
[2024-05-17 06:31:40] 2024-05-17 13:31:25,496 | INFO     | chi2: 30.708196111180683
[2024-05-17 06:31:40] 2024-05-17 13:31:25,496 | INFO     | -- intersect: -7626013163.848458
[2024-05-17 06:31:40] 2024-05-17 13:31:25,496 | INFO     | current memory leak: 4.45 B/s (using 3076 data points, chi2=30.71)
[2024-05-17 06:31:40] 2024-05-17 13:31:25,499 | INFO     | ..............................
[2024-05-17 06:31:40] 2024-05-17 13:31:25,499 | INFO     | . Timing measurements:
[2024-05-17 06:31:40] 2024-05-17 13:31:25,499 | INFO     | . get job = 0 s
[2024-05-17 06:31:40] 2024-05-17 13:31:25,499 | INFO     | . initial setup = 6 s
[2024-05-17 06:31:40] 2024-05-17 13:31:25,499 | INFO     | . payload setup = 155 s
[2024-05-17 06:31:40] 2024-05-17 13:31:25,499 | INFO     | . stage-in = 0 s
[2024-05-17 06:31:40] 2024-05-17 13:31:25,499 | INFO     | . payload execution = 200097 s
[2024-05-17 06:31:40] 2024-05-17 13:31:25,499 | INFO     | . stage-out = 5 s
[2024-05-17 06:31:40] 2024-05-17 13:31:25,499 | INFO     | . log creation = 2 s
[2024-05-17 06:31:40] 2024-05-17 13:31:25,499 | INFO     | ..............................
[2024-05-17 06:31:40] 2024-05-17 13:31:25,580 | INFO     | 
[2024-05-17 06:31:40] 2024-05-17 13:31:25,581 | INFO     | job summary report
[2024-05-17 06:31:40] 2024-05-17 13:31:25,581 | INFO     | --------------------------------------------------
[2024-05-17 06:31:40] 2024-05-17 13:31:25,581 | INFO     | PanDA job id: 6201775152
[2024-05-17 06:31:40] 2024-05-17 13:31:25,581 | INFO     | task id: 38734053
[2024-05-17 06:31:40] 2024-05-17 13:31:25,581 | INFO     | errors: (none)
[2024-05-17 06:31:40] 2024-05-17 13:31:25,582 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 06:31:40] 2024-05-17 13:31:25,582 | INFO     | pilot state: finished 
[2024-05-17 06:31:40] 2024-05-17 13:31:25,582 | INFO     | transexitcode: 0
[2024-05-17 06:31:40] 2024-05-17 13:31:25,582 | INFO     | exeerrorcode: 0
[2024-05-17 06:31:40] 2024-05-17 13:31:25,582 | INFO     | exeerrordiag: 
[2024-05-17 06:31:40] 2024-05-17 13:31:25,582 | INFO     | exitcode: 0
[2024-05-17 06:31:40] 2024-05-17 13:31:25,582 | INFO     | exitmsg: OK
[2024-05-17 06:31:40] 2024-05-17 13:31:25,582 | INFO     | cpuconsumptiontime: 281048 s
[2024-05-17 06:31:40] 2024-05-17 13:31:25,583 | INFO     | nevents: 1950
[2024-05-17 06:31:40] 2024-05-17 13:31:25,583 | INFO     | neventsw: 0
[2024-05-17 06:31:40] 2024-05-17 13:31:25,583 | INFO     | pid: 46735
[2024-05-17 06:31:40] 2024-05-17 13:31:25,583 | INFO     | pgrp: 46735
[2024-05-17 06:31:40] 2024-05-17 13:31:25,583 | INFO     | corecount: 12
[2024-05-17 06:31:40] 2024-05-17 13:31:25,583 | INFO     | event service: False
[2024-05-17 06:31:40] 2024-05-17 13:31:25,583 | INFO     | sizes: {0: 2394772, 1: 2394943, 2: 2394971, 15: 2394999, 27: 2395027, 39: 2395055, 52: 2395445, 64: 2395445, 200257: 2500504, 200262: 2509458, 200265: 2509514, 200
[2024-05-17 06:31:40] 2024-05-17 13:31:25,583 | INFO     | --------------------------------------------------
[2024-05-17 06:31:40] 2024-05-17 13:31:25,584 | INFO     | 
[2024-05-17 06:31:40] 2024-05-17 13:31:25,584 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 06:31:40] 2024-05-17 13:31:25,613 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,613 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,614 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,614 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,614 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,614 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,614 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,614 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,615 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,615 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,615 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,616 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 06:31:40] 2024-05-17 13:31:25,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,616 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 06:31:40] 2024-05-17 13:31:25,617 | INFO     | job 6201775152 has completed (purged errors)
[2024-05-17 06:31:40] 2024-05-17 13:31:25,617 | INFO     | overall cleanup function is called
[2024-05-17 06:31:40] 2024-05-17 13:31:26,633 | INFO     | --- collectZombieJob: --- 10, [46735]
[2024-05-17 06:31:40] 2024-05-17 13:31:26,634 | INFO     | zombie collector waiting for pid 46735
[2024-05-17 06:31:40] 2024-05-17 13:31:26,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 06:31:40] 2024-05-17 13:31:27,638 | INFO     | collected zombie processes
[2024-05-17 06:31:40] 2024-05-17 13:31:27,638 | INFO     | will now attempt to kill all subprocesses of pid=46735
[2024-05-17 06:31:40] 2024-05-17 13:31:27,840 | INFO     | process IDs to be killed: [46735] (in reverse order)
[2024-05-17 06:31:40] 2024-05-17 13:31:27,955 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 06:31:40] 2024-05-17 13:31:27,956 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 06:31:40] 2024-05-17 13:31:27,964 | INFO     | did not find any defunct processes belonging to 46735
[2024-05-17 06:31:40] 2024-05-17 13:31:27,971 | INFO     | did not find any defunct processes belonging to 46735
[2024-05-17 06:31:40] 2024-05-17 13:31:27,971 | INFO     | ready for new job
[2024-05-17 06:31:40] 2024-05-17 13:31:27,971 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 06:31:40] 2024-05-17 13:31:27,979 | INFO     | *************************************
[2024-05-17 06:31:40] 2024-05-17 13:31:27,979 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 06:31:40] 2024-05-17 13:31:27,979 | INFO     | *************************************
[2024-05-17 06:31:40] 2024-05-17 13:31:27,979 | INFO     | 
[2024-05-17 06:31:40] 2024-05-17 13:31:27,982 | INFO     | architecture information:
[2024-05-17 06:31:40] 2024-05-17 13:31:27,983 | INFO     | executing command: cat /etc/os-release
[2024-05-17 06:31:40] 2024-05-17 13:31:28,005 | INFO     | cat /etc/os-release:
[2024-05-17 06:31:40] NAME="CentOS Linux"
[2024-05-17 06:31:40] VERSION="7 (Core)"
[2024-05-17 06:31:40] ID="centos"
[2024-05-17 06:31:40] ID_LIKE="rhel fedora"
[2024-05-17 06:31:40] VERSION_ID="7"
[2024-05-17 06:31:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 06:31:40] ANSI_COLOR="0;31"
[2024-05-17 06:31:40] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 06:31:40] HOME_URL="https://www.centos.org/"
[2024-05-17 06:31:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 06:31:40] 
[2024-05-17 06:31:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 06:31:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 06:31:40] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 06:31:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 06:31:40] 
[2024-05-17 06:31:40] 2024-05-17 13:31:28,005 | INFO     | *************************************
[2024-05-17 06:31:40] 2024-05-17 13:31:28,509 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 06:31:40] 2024-05-17 13:31:28,534 | INFO     | sufficient remaining disk space (2142253350912 B)
[2024-05-17 06:31:40] 2024-05-17 13:31:28,534 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 06:31:40] 2024-05-17 13:31:28,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 06:31:40] 2024-05-17 13:31:28,535 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 06:31:40] 2024-05-17 13:31:28,536 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 06:31:40] 2024-05-17 13:31:28,536 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 06:31:40] 2024-05-17 13:31:28,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 06:31:40] 2024-05-17 13:31:28,747 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 06:31:40] 2024-05-17 13:31:28,747 | INFO     | aborting loop
[2024-05-17 06:31:40] 2024-05-17 13:31:29,016 | INFO     | all data control threads have been joined
[2024-05-17 06:31:40] 2024-05-17 13:31:29,174 | INFO     | all job control threads have been joined
[2024-05-17 06:31:40] 2024-05-17 13:31:29,541 | INFO     | [job] retrieve thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:29,563 | INFO     | all payload control threads have been joined
[2024-05-17 06:31:40] 2024-05-17 13:31:29,628 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:29,751 | INFO     | [job] job monitor thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:29,862 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:29,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 06:31:40] 2024-05-17 13:31:29,996 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 06:31:40] 2024-05-17 13:31:30,021 | INFO     | [data] control thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:30,056 | INFO     | [job] validate thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:30,176 | INFO     | [job] control thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:30,190 | INFO     | [data] copytool_in thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:30,299 | INFO     | [payload] validate_post thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:30,446 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:30,568 | INFO     | [payload] control thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:30,587 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 06:31:40] 2024-05-17 13:31:30,626 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:30,653 | INFO     | [payload] failed_post thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:31,589 | INFO     | [job] queue monitor thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:31,897 | INFO     | [data] copytool_out thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:33,998 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 06:31:40] 2024-05-17 13:31:34,314 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683345332032)>', '<ExcThread(monitor, started 140682786236160)>']
[2024-05-17 06:31:40] 2024-05-17 13:31:34,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 06:31:40] 2024-05-17 13:31:34,559 | INFO     | [monitor] control thread has ended
[2024-05-17 06:31:40] 2024-05-17 13:31:39,336 | INFO     | all workflow threads have been joined
[2024-05-17 06:31:40] 2024-05-17 13:31:39,337 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 06:31:40] 2024-05-17 13:31:39,337 | INFO     | traces error code: 0
[2024-05-17 06:31:40] 2024-05-17 13:31:39,338 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 06:31:40] 2024-05-17 13:31:39,484 [wrapper] ==== pilot stdout END ====
[2024-05-17 06:31:40] 2024-05-17 13:31:39,489 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 06:31:40] 2024-05-17 13:31:39,493 [wrapper] pilotpid: 20139
[2024-05-17 06:31:40] 2024-05-17 13:31:39,497 [wrapper] Pilot exit status: 0
[2024-05-17 06:31:40] 2024-05-17 13:31:39,513 [wrapper] pandaids: 6201775152
[2024-05-17 06:31:40] 2024-05-17 13:31:39,599 [wrapper] cleanup: SIGTERM to supervisor_pilot 126416 20140
[2024-05-17 06:31:40] 2024-05-17 13:31:39,604 [wrapper] Test setup, not cleaning
[2024-05-17 06:31:40] 2024-05-17 13:31:39,608 [wrapper] ==== wrapper stdout END ====
[2024-05-17 06:31:40] 2024-05-17 13:31:39,612 [wrapper] ==== wrapper stderr END ====
[2024-05-17 06:31:40] 2024-05-17 13:31:39,621 [wrapper] apfmon messages muted
[2024-05-17 06:31:40]  *** Error codes and diagnostics ***
[2024-05-17 06:31:40]     "exeErrorCode": 0,
[2024-05-17 06:31:40]     "exeErrorDiag": "",
[2024-05-17 06:31:40]     "pilotErrorCode": 0,
[2024-05-17 06:31:40]     "pilotErrorDiag": "",
[2024-05-17 06:31:40]  *** Listing of results directory ***
[2024-05-17 06:31:40] total 1552400
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc     467845 May 10 10:45 pilot3.tar.gz
[2024-05-17 06:31:40] -rwx------ 1 boinc boinc      32251 May 10 10:48 runpilot2-wrapper.sh
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc       5633 May 10 10:48 queuedata.json
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc        100 May 14 22:48 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 06:31:40] -rwxr-xr-x 1 boinc boinc       7986 May 14 22:48 run_atlas
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc        105 May 14 22:48 job.xml
[2024-05-17 06:31:40] -rw-r--r-- 2 boinc boinc  328124580 May 14 22:48 EVNT.38734051._000715.pool.root.1
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc       6622 May 14 22:48 init_data.xml
[2024-05-17 06:31:40] drwxrwx--x 2 boinc boinc       4096 May 14 22:48 shared
[2024-05-17 06:31:40] -rw-r--r-- 2 boinc boinc     480166 May 14 22:48 input.tar.gz
[2024-05-17 06:31:40] -rw-r--r-- 2 boinc boinc      17537 May 14 22:48 start_atlas.sh
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc          0 May 14 22:48 boinc_lockfile
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc       2853 May 14 22:48 pandaJob.out
[2024-05-17 06:31:40] -rw------- 1 boinc boinc        424 May 14 22:48 setup.sh.local
[2024-05-17 06:31:40] -rw------- 1 boinc boinc    1007426 May 14 22:51 agis_schedconf.cvmfs.json
[2024-05-17 06:31:40] -rw------- 1 boinc boinc    1324588 May 14 22:51 cric_ddmendpoints.json
[2024-05-17 06:31:40] drwx------ 4 boinc boinc       4096 May 14 22:51 pilot3
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc        534 May 17 06:19 boinc_task_state.xml
[2024-05-17 06:31:40] -rw------- 1 boinc boinc         95 May 17 06:30 pilot_heartbeat.json
[2024-05-17 06:31:40] -rw------- 1 boinc boinc 1197162727 May 17 06:30 HITS.38734053._004635.pool.root.1
[2024-05-17 06:31:40] -rw------- 1 boinc boinc       1085 May 17 06:31 memory_monitor_summary.json
[2024-05-17 06:31:40] -rw------- 1 boinc boinc          0 May 17 06:31 agis_ddmendpoints.agis.ALL.json
[2024-05-17 06:31:40] -rw------- 1 boinc boinc    6900585 May 17 06:31 log.38734053._004635.job.log.tgz.1
[2024-05-17 06:31:40] -rw------- 1 boinc boinc      27196 May 17 06:31 heartbeat.json
[2024-05-17 06:31:40] -rw------- 1 boinc boinc       4333 May 17 06:31 pilotlog.txt
[2024-05-17 06:31:40] -rw------- 1 boinc boinc   23501761 May 17 06:31 log.38734053._004635.job.log.1
[2024-05-17 06:31:40] -rw------- 1 boinc boinc        353 May 17 06:31 output.list
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc        620 May 17 06:31 runtime_log
[2024-05-17 06:31:40] -rw------- 1 boinc boinc   30443520 May 17 06:31 result.tar.gz
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc      11288 May 17 06:31 runtime_log.err
[2024-05-17 06:31:40] -rw------- 1 boinc boinc        668 May 17 06:31 DvZKDmNXjP5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmEzFKDmQT9qbn.diag
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc         30 May 17 06:31 wrapper_checkpoint.txt
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc       8192 May 17 06:31 boinc_mmap_file
[2024-05-17 06:31:40] -rw-r--r-- 1 boinc boinc      22278 May 17 06:31 stderr.txt
[2024-05-17 06:31:40] HITS file was successfully produced:
[2024-05-17 06:31:40] -rw------- 1 boinc boinc 1197162727 May 17 06:30 shared/HITS.pool.root.1
[2024-05-17 06:31:40]  *** Contents of shared directory: ***
[2024-05-17 06:31:40] total 1519776
[2024-05-17 06:31:40] -rw-r--r-- 2 boinc boinc  328124580 May 14 22:48 ATLAS.root_0
[2024-05-17 06:31:40] -rw-r--r-- 2 boinc boinc     480166 May 14 22:48 input.tar.gz
[2024-05-17 06:31:40] -rw-r--r-- 2 boinc boinc      17537 May 14 22:48 start_atlas.sh
[2024-05-17 06:31:40] -rw------- 1 boinc boinc 1197162727 May 17 06:30 HITS.pool.root.1
[2024-05-17 06:31:40] -rw------- 1 boinc boinc   30443520 May 17 06:31 result.tar.gz
06:31:42 (13879): run_atlas exited; CPU time 269395.334097
06:31:42 (13879): called boinc_finish(0)

</stderr_txt>
]]>

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