Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:47:08 (242487): wrapper (7.7.26015): starting
02:47:08 (242487): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 02:47:08] Arguments: --nthreads 4
[2024-05-15 02:47:08] Threads: 4
[2024-05-15 02:47:08] Checking for CVMFS
[2024-05-15 02:47:08] No cvmfs_config command found, will try listing directly
[2024-05-15 02:47:08] CVMFS is ok
[2024-05-15 02:47:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 02:47:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 02:47:08] Further information can be found at the LHC@home message board.
[2024-05-15 02:47:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 02:47:08] Checking for apptainer binary...
[2024-05-15 02:47:08] which: no apptainer in ((null))
[2024-05-15 02:47:08] apptainer is not installed, using version from CVMFS
[2024-05-15 02:47:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 02:47:09] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2024-05-15 02:47:09] apptainer works
[2024-05-15 02:47:09] Set ATHENA_PROC_NUMBER=4
[2024-05-15 02:47:09] Set ATHENA_CORE_NUMBER=4
[2024-05-15 02:47:09] Starting ATLAS job with PandaID=6201756614
[2024-05-15 02:47:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:14:59 (3353434): wrapper (7.7.26015): starting
14:14:59 (3353434): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 14:14:59] Arguments: --nthreads 4
[2024-05-15 14:14:59] Threads: 4
[2024-05-15 14:14:59] This job has been restarted, cleaning up previous attempt
[2024-05-15 14:14:59] Checking for CVMFS
[2024-05-15 14:14:59] No cvmfs_config command found, will try listing directly
[2024-05-15 14:14:59] CVMFS is ok
[2024-05-15 14:14:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 14:14:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 14:14:59] Further information can be found at the LHC@home message board.
[2024-05-15 14:14:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 14:14:59] Checking for apptainer binary...
[2024-05-15 14:14:59] which: no apptainer in ((null))
[2024-05-15 14:14:59] apptainer is not installed, using version from CVMFS
[2024-05-15 14:14:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 14:15:00] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2024-05-15 14:15:00] apptainer works
[2024-05-15 14:15:00] Set ATHENA_PROC_NUMBER=4
[2024-05-15 14:15:00] Set ATHENA_CORE_NUMBER=4
[2024-05-15 14:15:00] Starting ATLAS job with PandaID=6201756614
[2024-05-15 14:15:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 08:27:11]  *** The last 200 lines of the pilot log: ***
[2024-05-16 08:27:11] 2024-05-16 06:26:49,229 | INFO     | 65500s have passed since pilot start
[2024-05-16 08:27:11] 2024-05-16 06:26:49,650 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-16 08:27:11] 2024-05-16 06:26:49,718 | INFO     | job 6201756614 has state=finished
[2024-05-16 08:27:11] 2024-05-16 06:26:49,719 | INFO     | preparing for final server update for job 6201756614 in state='finished'
[2024-05-16 08:27:11] 2024-05-16 06:26:49,719 | INFO     | this job has now completed (state=finished)
[2024-05-16 08:27:11] 2024-05-16 06:26:49,719 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-16 08:27:11] 2024-05-16 06:26:49,720 | INFO     | job 6201756614 has finished - writing final server update
[2024-05-16 08:27:11] 2024-05-16 06:26:49,720 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3303014/.job.ad'
[2024-05-16 08:27:11] 2024-05-16 06:26:49,720 | INFO     | total number of processed events: 1950 (read)
[2024-05-16 08:27:11] 2024-05-16 06:26:49,726 | INFO     | executing command: lscpu
[2024-05-16 08:27:11] 2024-05-16 06:26:49,792 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-05-16 08:27:11] 2024-05-16 06:26:49,792 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-16 08:27:11] 2024-05-16 06:26:49,842 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-16 08:27:11] 2024-05-16 06:26:57,276 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-16 08:27:11] 2024-05-16 06:26:57,277 | INFO     | using path: /scratch/boinc/var/slot80/slots/1/PanDA_Pilot-6201756614/memory_monitor_summary.json (trf name=prmon)
[2024-05-16 08:27:11] 2024-05-16 06:26:57,282 | INFO     | extracted standard info from prmon json
[2024-05-16 08:27:11] 2024-05-16 06:26:57,282 | INFO     | extracted standard memory fields from prmon json
[2024-05-16 08:27:11] 2024-05-16 06:26:57,283 | WARNING  | GPU info not found in prmon json
[2024-05-16 08:27:11] 2024-05-16 06:26:57,300 | INFO     | fitting pss+swap vs Time
[2024-05-16 08:27:11] 2024-05-16 06:26:57,302 | INFO     | model: linear, x: [1715775340.0, 1715775401.0, 1715775462.0, 1715775523.0, 1715775584.0, 1715775645.0, 1715775706.0, 1715775767.0, 1715775828.0, 1715775889.0, 1715
[2024-05-16 08:27:11] 2024-05-16 06:26:57,302 | INFO     | sum of square deviations: 384141202512.5
[2024-05-16 08:27:11] 2024-05-16 06:26:57,330 | INFO     | sum of deviations: 2202942751325.5
[2024-05-16 08:27:11] 2024-05-16 06:26:57,330 | INFO     | mean x: 1715808066.5
[2024-05-16 08:27:11] 2024-05-16 06:26:57,330 | INFO     | mean y: 2658607.8947858475
[2024-05-16 08:27:11] 2024-05-16 06:26:57,330 | INFO     | -- intersect: -9837022525.083916
[2024-05-16 08:27:11] 2024-05-16 06:26:57,330 | INFO     | intersect: -9837022525.083916
[2024-05-16 08:27:11] 2024-05-16 06:26:57,331 | INFO     | chi2: 16.312241050912274
[2024-05-16 08:27:11] 2024-05-16 06:26:57,332 | INFO     | model: linear, x: [1715775340.0, 1715775401.0, 1715775462.0, 1715775523.0, 1715775584.0, 1715775645.0, 1715775706.0, 1715775767.0, 1715775828.0, 1715775889.0, 1715
[2024-05-16 08:27:11] 2024-05-16 06:26:57,333 | INFO     | sum of square deviations: 378801037270.0
[2024-05-16 08:27:11] 2024-05-16 06:26:57,358 | INFO     | sum of deviations: 2529251359683.9995
[2024-05-16 08:27:11] 2024-05-16 06:26:57,359 | INFO     | mean x: 1715807914.0
[2024-05-16 08:27:11] 2024-05-16 06:26:57,359 | INFO     | mean y: 2667924.674462114
[2024-05-16 08:27:11] 2024-05-16 06:26:57,359 | INFO     | -- intersect: -11453767175.707352
[2024-05-16 08:27:11] 2024-05-16 06:26:57,359 | INFO     | intersect: -11453767175.707352
[2024-05-16 08:27:11] 2024-05-16 06:26:57,360 | INFO     | chi2: 13.379410046572918
[2024-05-16 08:27:11] 2024-05-16 06:26:57,360 | INFO     | current chi2=13.379410046572918 (change=17.97932604836866 %)
[2024-05-16 08:27:11] 2024-05-16 06:26:57,360 | INFO     | right removable region: 1068
[2024-05-16 08:27:11] 2024-05-16 06:26:57,361 | INFO     | model: linear, x: [1715775645.0, 1715775706.0, 1715775767.0, 1715775828.0, 1715775889.0, 1715775950.0, 1715776011.0, 1715776072.0, 1715776133.0, 1715776194.0, 1715
[2024-05-16 08:27:11] 2024-05-16 06:26:57,361 | INFO     | sum of square deviations: 378801037270.0
[2024-05-16 08:27:11] 2024-05-16 06:26:57,388 | INFO     | sum of deviations: 1864857602954.0
[2024-05-16 08:27:11] 2024-05-16 06:26:57,389 | INFO     | mean x: 1715808219.0
[2024-05-16 08:27:11] 2024-05-16 06:26:57,389 | INFO     | mean y: 2668259.981290926
[2024-05-16 08:27:11] 2024-05-16 06:26:57,389 | INFO     | -- intersect: -8444346630.668066
[2024-05-16 08:27:11] 2024-05-16 06:26:57,389 | INFO     | intersect: -8444346630.668066
[2024-05-16 08:27:11] 2024-05-16 06:26:57,391 | INFO     | chi2: 13.156066332073985
[2024-05-16 08:27:11] 2024-05-16 06:26:57,391 | INFO     | current chi2=13.156066332073985 (change=19.348504653575954 %)
[2024-05-16 08:27:11] 2024-05-16 06:26:57,391 | INFO     | left removable region: 10
[2024-05-16 08:27:11] 2024-05-16 06:26:57,392 | INFO     | model: linear, x: [1715775950.0, 1715776011.0, 1715776072.0, 1715776133.0, 1715776194.0, 1715776255.0, 1715776316.0, 1715776377.0, 1715776438.0, 1715776499.0, 1715
[2024-05-16 08:27:11] 2024-05-16 06:26:57,392 | INFO     | sum of square deviations: 367227367244.5
[2024-05-16 08:27:11] 2024-05-16 06:26:57,416 | INFO     | sum of deviations: 1960536836082.5002
[2024-05-16 08:27:11] 2024-05-16 06:26:57,416 | INFO     | mean x: 1715808188.5
[2024-05-16 08:27:11] 2024-05-16 06:26:57,416 | INFO     | mean y: 2688325.131379962
[2024-05-16 08:27:11] 2024-05-16 06:26:57,416 | INFO     | -- intersect: -9157590720.64722
[2024-05-16 08:27:11] 2024-05-16 06:26:57,416 | INFO     | intersect: -9157590720.64722
[2024-05-16 08:27:11] 2024-05-16 06:26:57,417 | INFO     | chi2: 7.227946216826981
[2024-05-16 08:27:11] 2024-05-16 06:26:57,417 | INFO     | -- intersect: -9157590720.64722
[2024-05-16 08:27:11] 2024-05-16 06:26:57,418 | INFO     | current memory leak: 5.34 B/s (using 1058 data points, chi2=7.23)
[2024-05-16 08:27:11] 2024-05-16 06:26:57,419 | INFO     | ..............................
[2024-05-16 08:27:11] 2024-05-16 06:26:57,419 | INFO     | . Timing measurements:
[2024-05-16 08:27:11] 2024-05-16 06:26:57,419 | INFO     | . get job = 0 s
[2024-05-16 08:27:11] 2024-05-16 06:26:57,419 | INFO     | . initial setup = 0 s
[2024-05-16 08:27:11] 2024-05-16 06:26:57,419 | INFO     | . payload setup = 9 s
[2024-05-16 08:27:11] 2024-05-16 06:26:57,419 | INFO     | . stage-in = 0 s
[2024-05-16 08:27:11] 2024-05-16 06:26:57,420 | INFO     | . payload execution = 65468 s
[2024-05-16 08:27:11] 2024-05-16 06:26:57,420 | INFO     | . stage-out = 2 s
[2024-05-16 08:27:11] 2024-05-16 06:26:57,420 | INFO     | . log creation = 0 s
[2024-05-16 08:27:11] 2024-05-16 06:26:57,420 | INFO     | ..............................
[2024-05-16 08:27:11] 2024-05-16 06:26:57,520 | INFO     | 
[2024-05-16 08:27:11] 2024-05-16 06:26:57,520 | INFO     | job summary report
[2024-05-16 08:27:11] 2024-05-16 06:26:57,520 | INFO     | --------------------------------------------------
[2024-05-16 08:27:11] 2024-05-16 06:26:57,520 | INFO     | PanDA job id: 6201756614
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | task id: 38734053
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | errors: (none)
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | pilot state: finished 
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | transexitcode: 0
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | exeerrorcode: 0
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | exeerrordiag: 
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | exitcode: 0
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | exitmsg: OK
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | cpuconsumptiontime: 255045 s
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | nevents: 1950
[2024-05-16 08:27:11] 2024-05-16 06:26:57,521 | INFO     | neventsw: 0
[2024-05-16 08:27:11] 2024-05-16 06:26:57,522 | INFO     | pid: 3379053
[2024-05-16 08:27:11] 2024-05-16 06:26:57,522 | INFO     | pgrp: 3379053
[2024-05-16 08:27:11] 2024-05-16 06:26:57,522 | INFO     | corecount: 4
[2024-05-16 08:27:11] 2024-05-16 06:26:57,522 | INFO     | event service: False
[2024-05-16 08:27:11] 2024-05-16 06:26:57,522 | INFO     | sizes: {0: 2394843, 1: 2394957, 5: 2395191, 11: 2395247, 65482: 2469459, 65484: 2478441, 65485: 2478625, 65492: 2478847}
[2024-05-16 08:27:11] 2024-05-16 06:26:57,522 | INFO     | --------------------------------------------------
[2024-05-16 08:27:11] 2024-05-16 06:26:57,522 | INFO     | 
[2024-05-16 08:27:11] 2024-05-16 06:26:57,522 | INFO     | executing command: ls -lF /scratch/boinc/var/slot80/slots/1
[2024-05-16 08:27:11] 2024-05-16 06:26:57,548 | WARNING  | process 3379053 is no longer using CPU - aborting
[2024-05-16 08:27:11] 2024-05-16 06:26:57,552 | INFO     | aborting job monitoring since job object (job id=6201756614) has expired
[2024-05-16 08:27:11] 2024-05-16 06:26:57,572 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,572 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,572 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,573 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,574 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,574 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 08:27:11] 2024-05-16 06:26:57,574 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,574 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 08:27:11] 2024-05-16 06:26:57,574 | INFO     | job 6201756614 has completed (purged errors)
[2024-05-16 08:27:11] 2024-05-16 06:26:57,574 | INFO     | overall cleanup function is called
[2024-05-16 08:27:11] 2024-05-16 06:26:58,586 | INFO     | --- collectZombieJob: --- 10, [3379053]
[2024-05-16 08:27:11] 2024-05-16 06:26:58,587 | INFO     | zombie collector waiting for pid 3379053
[2024-05-16 08:27:11] 2024-05-16 06:26:58,587 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 08:27:11] 2024-05-16 06:26:59,591 | INFO     | collected zombie processes
[2024-05-16 08:27:11] 2024-05-16 06:26:59,592 | INFO     | will now attempt to kill all subprocesses of pid=3379053
[2024-05-16 08:27:11] 2024-05-16 06:26:59,872 | INFO     | process IDs to be killed: [3379053] (in reverse order)
[2024-05-16 08:27:11] 2024-05-16 06:27:00,096 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 08:27:11] 2024-05-16 06:27:00,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 08:27:11] 2024-05-16 06:27:00,119 | INFO     | did not find any defunct processes belonging to 3379053
[2024-05-16 08:27:11] 2024-05-16 06:27:00,135 | INFO     | did not find any defunct processes belonging to 3379053
[2024-05-16 08:27:11] 2024-05-16 06:27:00,135 | INFO     | ready for new job
[2024-05-16 08:27:11] 2024-05-16 06:27:00,135 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 08:27:11] 2024-05-16 06:27:00,142 | INFO     | *************************************
[2024-05-16 08:27:11] 2024-05-16 06:27:00,142 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 08:27:11] 2024-05-16 06:27:00,142 | INFO     | *************************************
[2024-05-16 08:27:11] 2024-05-16 06:27:00,142 | INFO     | 
[2024-05-16 08:27:11] 2024-05-16 06:27:00,149 | INFO     | architecture information:
[2024-05-16 08:27:11] 2024-05-16 06:27:00,150 | INFO     | executing command: cat /etc/os-release
[2024-05-16 08:27:11] 2024-05-16 06:27:00,170 | INFO     | cat /etc/os-release:
[2024-05-16 08:27:11] NAME="CentOS Linux"
[2024-05-16 08:27:11] VERSION="7 (Core)"
[2024-05-16 08:27:11] ID="centos"
[2024-05-16 08:27:11] ID_LIKE="rhel fedora"
[2024-05-16 08:27:11] VERSION_ID="7"
[2024-05-16 08:27:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 08:27:11] ANSI_COLOR="0;31"
[2024-05-16 08:27:11] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 08:27:11] HOME_URL="https://www.centos.org/"
[2024-05-16 08:27:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 08:27:11] 
[2024-05-16 08:27:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 08:27:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 08:27:11] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 08:27:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 08:27:11] 
[2024-05-16 08:27:11] 2024-05-16 06:27:00,170 | INFO     | *************************************
[2024-05-16 08:27:11] 2024-05-16 06:27:00,673 | INFO     | executing command: df -mP /scratch/boinc/var/slot80/slots/1
[2024-05-16 08:27:11] 2024-05-16 06:27:00,692 | INFO     | sufficient remaining disk space (2939243462656 B)
[2024-05-16 08:27:11] 2024-05-16 06:27:00,693 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 08:27:11] 2024-05-16 06:27:00,693 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 08:27:11] 2024-05-16 06:27:00,693 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 08:27:11] 2024-05-16 06:27:00,694 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-16 08:27:11] 2024-05-16 06:27:00,694 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 08:27:11] 2024-05-16 06:27:00,695 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 08:27:11] 2024-05-16 06:27:00,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 08:27:11] 2024-05-16 06:27:00,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 08:27:11] 2024-05-16 06:27:00,922 | INFO     | all data control threads have been joined
[2024-05-16 08:27:11] 2024-05-16 06:27:01,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 08:27:11] 2024-05-16 06:27:01,060 | INFO     | aborting loop
[2024-05-16 08:27:11] 2024-05-16 06:27:01,087 | INFO     | all payload control threads have been joined
[2024-05-16 08:27:11] 2024-05-16 06:27:01,658 | INFO     | all job control threads have been joined
[2024-05-16 08:27:11] 2024-05-16 06:27:01,698 | INFO     | [job] retrieve thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:01,926 | INFO     | [data] control thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:02,064 | INFO     | [job] job monitor thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:02,092 | INFO     | [payload] control thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:02,163 | INFO     | [job] validate thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:02,300 | INFO     | [payload] validate_post thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:02,333 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:02,398 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:02,529 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 08:27:11] 2024-05-16 06:27:02,584 | INFO     | [payload] failed_post thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:02,663 | INFO     | [job] control thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:02,700 | INFO     | [data] copytool_out thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:02,827 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:03,097 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:03,154 | INFO     | [data] copytool_in thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:03,534 | INFO     | [job] queue monitor thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:04,701 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 08:27:11] 2024-05-16 06:27:05,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47205659812928)>', '<ExcThread(monitor, started 47205835036416)>']
[2024-05-16 08:27:11] 2024-05-16 06:27:05,720 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 08:27:11] 2024-05-16 06:27:05,721 | INFO     | [monitor] control thread has ended
[2024-05-16 08:27:11] 2024-05-16 06:27:10,649 | INFO     | all workflow threads have been joined
[2024-05-16 08:27:11] 2024-05-16 06:27:10,650 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 08:27:11] 2024-05-16 06:27:10,650 | INFO     | traces error code: 0
[2024-05-16 08:27:11] 2024-05-16 06:27:10,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 08:27:11] 2024-05-16 06:27:10,754 [wrapper] ==== pilot stdout END ====
[2024-05-16 08:27:11] 2024-05-16 06:27:10,757 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 08:27:11] 2024-05-16 06:27:10,762 [wrapper] pilotpid: 3362573
[2024-05-16 08:27:11] 2024-05-16 06:27:10,764 [wrapper] Pilot exit status: 0
[2024-05-16 08:27:11] 2024-05-16 06:27:10,782 [wrapper] pandaids: 6201756614 6201756614
[2024-05-16 08:27:11] 2024-05-16 06:27:10,914 [wrapper] cleanup: SIGTERM to supervisor_pilot  535859 3362574
[2024-05-16 08:27:11] 2024-05-16 06:27:10,920 [wrapper] Test setup, not cleaning
[2024-05-16 08:27:11] 2024-05-16 06:27:10,922 [wrapper] ==== wrapper stdout END ====
[2024-05-16 08:27:11] 2024-05-16 06:27:10,924 [wrapper] ==== wrapper stderr END ====
[2024-05-16 08:27:11] 2024-05-16 06:27:10,928 [wrapper] apfmon messages muted
[2024-05-16 08:27:11]  *** Error codes and diagnostics ***
[2024-05-16 08:27:11]     "exeErrorCode": 0,
[2024-05-16 08:27:11]     "exeErrorDiag": "",
[2024-05-16 08:27:11]     "pilotErrorCode": 0,
[2024-05-16 08:27:11]     "pilotErrorDiag": "",
[2024-05-16 08:27:11]  *** Listing of results directory ***
[2024-05-16 08:27:11] total 1817596
[2024-05-16 08:27:11] drwx------ 4 boinc boinc       4096 May  8 14:24 pilot3
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc     467845 May 10 19:30 pilot3.tar.gz
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc       5633 May 10 19:33 queuedata.json
[2024-05-16 08:27:11] -rwx------ 1 boinc boinc      32251 May 10 19:33 runpilot2-wrapper.sh
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc        100 May 15 02:47 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 08:27:11] -rwxr-xr-x 1 boinc boinc       7986 May 15 02:47 run_atlas
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc        105 May 15 02:47 job.xml
[2024-05-16 08:27:11] -rw-r--r-- 3 boinc boinc  325304223 May 15 02:47 EVNT.38734051._000207.pool.root.1
[2024-05-16 08:27:11] -rw-r--r-- 3 boinc boinc  325304223 May 15 02:47 ATLAS.root_0
[2024-05-16 08:27:11] -rw-r--r-- 2 boinc boinc      17537 May 15 02:47 start_atlas.sh
[2024-05-16 08:27:11] drwxrwx--x 2 boinc boinc       4096 May 15 02:47 shared
[2024-05-16 08:27:11] -rw-r--r-- 2 boinc boinc     480176 May 15 02:47 input.tar.gz
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc          0 May 15 02:47 boinc_lockfile
[2024-05-16 08:27:11] -rw------- 1 boinc boinc    1324588 May 15 02:47 cric_ddmendpoints.json
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc       2853 May 15 14:15 pandaJob.out
[2024-05-16 08:27:11] -rw------- 1 boinc boinc        424 May 15 14:15 setup.sh.local
[2024-05-16 08:27:11] -rw------- 1 boinc boinc    1010553 May 15 14:15 agis_schedconf.cvmfs.json
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc       6653 May 15 18:48 init_data.xml
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc        534 May 16 08:18 boinc_task_state.xml
[2024-05-16 08:27:11] -rw------- 1 boinc boinc 1181355067 May 16 08:26 HITS.38734053._003942.pool.root.1
[2024-05-16 08:27:11] -rw------- 1 boinc boinc       1054 May 16 08:26 memory_monitor_summary.json
[2024-05-16 08:27:11] -rw------- 1 boinc boinc         97 May 16 08:26 pilot_heartbeat.json
[2024-05-16 08:27:11] -rw------- 1 boinc boinc          0 May 16 08:26 agis_ddmendpoints.agis.ALL.json
[2024-05-16 08:27:11] -rw------- 1 boinc boinc    1971215 May 16 08:26 log.38734053._003942.job.log.tgz.1
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc       8192 May 16 08:26 boinc_mmap_file
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc         30 May 16 08:26 wrapper_checkpoint.txt
[2024-05-16 08:27:11] -rw------- 1 boinc boinc      28013 May 16 08:26 heartbeat.json
[2024-05-16 08:27:11] -rw------- 1 boinc boinc       4345 May 16 08:27 pilotlog.txt
[2024-05-16 08:27:11] -rw------- 1 boinc boinc   10871752 May 16 08:27 log.38734053._003942.job.log.1
[2024-05-16 08:27:11] -rw------- 1 boinc boinc        353 May 16 08:27 output.list
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc        620 May 16 08:27 runtime_log
[2024-05-16 08:27:11] -rw------- 1 boinc boinc   12881920 May 16 08:27 result.tar.gz
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc      11487 May 16 08:27 runtime_log.err
[2024-05-16 08:27:11] -rw------- 1 boinc boinc        779 May 16 08:27 7xZKDmFJjP5n9Rq4apoT9bVoABFKDmABFKDmlqFKDm0sFKDmJxsVNo.diag
[2024-05-16 08:27:11] -rw-r--r-- 1 boinc boinc      23575 May 16 08:27 stderr.txt
[2024-05-16 08:27:11] HITS file was successfully produced:
[2024-05-16 08:27:11] -rw------- 1 boinc boinc 1181355067 May 16 08:26 shared/HITS.pool.root.1
[2024-05-16 08:27:11]  *** Contents of shared directory: ***
[2024-05-16 08:27:11] total 1484428
[2024-05-16 08:27:11] -rw-r--r-- 3 boinc boinc  325304223 May 15 02:47 ATLAS.root_0
[2024-05-16 08:27:11] -rw-r--r-- 2 boinc boinc      17537 May 15 02:47 start_atlas.sh
[2024-05-16 08:27:11] -rw-r--r-- 2 boinc boinc     480176 May 15 02:47 input.tar.gz
[2024-05-16 08:27:11] -rw------- 1 boinc boinc 1181355067 May 16 08:26 HITS.pool.root.1
[2024-05-16 08:27:11] -rw------- 1 boinc boinc   12881920 May 16 08:27 result.tar.gz
08:27:13 (3353434): run_atlas exited; CPU time 253089.029575
08:27:13 (3353434): called boinc_finish(0)

</stderr_txt>
]]>

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