Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:57:44 (3492679): wrapper (7.7.26015): starting
03:57:44 (3492679): wrapper: running run_atlas (--nthreads 4)
[2024-05-12 03:57:44] Arguments: --nthreads 4
[2024-05-12 03:57:44] Threads: 4
[2024-05-12 03:57:44] Checking for CVMFS
[2024-05-12 03:57:44] No cvmfs_config command found, will try listing directly
[2024-05-12 03:57:44] CVMFS is ok
[2024-05-12 03:57:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-12 03:57:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-12 03:57:44] Further information can be found at the LHC@home message board.
[2024-05-12 03:57:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-12 03:57:44] Checking for apptainer binary...
[2024-05-12 03:57:44] which: no apptainer in ((null))
[2024-05-12 03:57:44] apptainer is not installed, using version from CVMFS
[2024-05-12 03:57:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-12 03:57:45] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2024-05-12 03:57:45] apptainer works
[2024-05-12 03:57:45] Set ATHENA_PROC_NUMBER=4
[2024-05-12 03:57:45] Set ATHENA_CORE_NUMBER=4
[2024-05-12 03:57:45] Starting ATLAS job with PandaID=6199903445
[2024-05-12 03:57:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-12 21:18:16]  *** The last 200 lines of the pilot log: ***
[2024-05-12 21:18:16] 2024-05-12 19:17:55,111 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-12 21:18:16] 2024-05-12 19:17:55,806 | INFO     | job 6199903445 has state=finished
[2024-05-12 21:18:16] 2024-05-12 19:17:55,806 | INFO     | preparing for final server update for job 6199903445 in state='finished'
[2024-05-12 21:18:16] 2024-05-12 19:17:55,807 | INFO     | this job has now completed (state=finished)
[2024-05-12 21:18:16] 2024-05-12 19:17:55,807 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-12 21:18:16] 2024-05-12 19:17:55,807 | INFO     | job 6199903445 has finished - writing final server update
[2024-05-12 21:18:16] 2024-05-12 19:17:55,807 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_21536/.job.ad'
[2024-05-12 21:18:16] 2024-05-12 19:17:55,807 | INFO     | total number of processed events: 1950 (read)
[2024-05-12 21:18:16] 2024-05-12 19:17:55,812 | INFO     | executing command: lscpu
[2024-05-12 21:18:16] 2024-05-12 19:17:55,854 | INFO     | found 20 cores (10 cores per socket, 2 sockets)
[2024-05-12 21:18:16] 2024-05-12 19:17:55,854 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-12 21:18:16] 2024-05-12 19:17:55,884 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-12 21:18:16] 2024-05-12 19:17:57,034 | INFO     | monitor loop #4851: job 0:6199903445 is in state 'finished'
[2024-05-12 21:18:16] 2024-05-12 19:17:57,034 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-12 21:18:16] 2024-05-12 19:17:59,537 | INFO     | monitor loop #4852: job 0:6199903445 is in state 'finished'
[2024-05-12 21:18:16] 2024-05-12 19:17:59,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-12 21:18:16] 2024-05-12 19:18:00,075 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-12 21:18:16] 2024-05-12 19:18:00,076 | INFO     | using path: /scratch/boinc/var/slot40/slots/1/PanDA_Pilot-6199903445/memory_monitor_summary.json (trf name=prmon)
[2024-05-12 21:18:16] 2024-05-12 19:18:00,076 | INFO     | extracted standard info from prmon json
[2024-05-12 21:18:16] 2024-05-12 19:18:00,076 | INFO     | extracted standard memory fields from prmon json
[2024-05-12 21:18:16] 2024-05-12 19:18:00,076 | WARNING  | GPU info not found in prmon json
[2024-05-12 21:18:16] 2024-05-12 19:18:00,088 | INFO     | fitting pss+swap vs Time
[2024-05-12 21:18:16] 2024-05-12 19:18:00,089 | INFO     | model: linear, x: [1715479096.0, 1715479157.0, 1715479218.0, 1715479279.0, 1715479340.0, 1715479401.0, 1715479462.0, 1715479523.0, 1715479584.0, 1715479645.0, 1715
[2024-05-12 21:18:16] 2024-05-12 19:18:00,089 | INFO     | sum of square deviations: 331974641152.0
[2024-05-12 21:18:16] 2024-05-12 19:18:00,105 | INFO     | sum of deviations: 1939058518648.0007
[2024-05-12 21:18:16] 2024-05-12 19:18:00,105 | INFO     | mean x: 1715510267.0
[2024-05-12 21:18:16] 2024-05-12 19:18:00,105 | INFO     | mean y: 2767112.776148583
[2024-05-12 21:18:16] 2024-05-12 19:18:00,105 | INFO     | -- intersect: -10017500656.807419
[2024-05-12 21:18:16] 2024-05-12 19:18:00,105 | INFO     | intersect: -10017500656.807419
[2024-05-12 21:18:16] 2024-05-12 19:18:00,106 | INFO     | chi2: 15.420979531313971
[2024-05-12 21:18:16] 2024-05-12 19:18:00,107 | INFO     | model: linear, x: [1715479096.0, 1715479157.0, 1715479218.0, 1715479279.0, 1715479340.0, 1715479401.0, 1715479462.0, 1715479523.0, 1715479584.0, 1715479645.0, 1715
[2024-05-12 21:18:16] 2024-05-12 19:18:00,107 | INFO     | sum of square deviations: 327130727074.5
[2024-05-12 21:18:16] 2024-05-12 19:18:00,122 | INFO     | sum of deviations: 2264300865794.5
[2024-05-12 21:18:16] 2024-05-12 19:18:00,122 | INFO     | mean x: 1715510114.5
[2024-05-12 21:18:16] 2024-05-12 19:18:00,122 | INFO     | mean y: 2777353.179764244
[2024-05-12 21:18:16] 2024-05-12 19:18:00,122 | INFO     | -- intersect: -11871469594.759617
[2024-05-12 21:18:16] 2024-05-12 19:18:00,122 | INFO     | intersect: -11871469594.759617
[2024-05-12 21:18:16] 2024-05-12 19:18:00,123 | INFO     | chi2: 12.484250305449171
[2024-05-12 21:18:16] 2024-05-12 19:18:00,123 | INFO     | current chi2=12.484250305449171 (change=19.043726891028246 %)
[2024-05-12 21:18:16] 2024-05-12 19:18:00,123 | INFO     | right removable region: 1017
[2024-05-12 21:18:16] 2024-05-12 19:18:00,124 | INFO     | model: linear, x: [1715479401.0, 1715479462.0, 1715479523.0, 1715479584.0, 1715479645.0, 1715479706.0, 1715479767.0, 1715479828.0, 1715479889.0, 1715479950.0, 1715
[2024-05-12 21:18:16] 2024-05-12 19:18:00,125 | INFO     | sum of square deviations: 327130727074.5
[2024-05-12 21:18:16] 2024-05-12 19:18:00,140 | INFO     | sum of deviations: 1602461121449.9998
[2024-05-12 21:18:16] 2024-05-12 19:18:00,140 | INFO     | mean x: 1715510419.5
[2024-05-12 21:18:16] 2024-05-12 19:18:00,140 | INFO     | mean y: 2777706.3575638505
[2024-05-12 21:18:16] 2024-05-12 19:18:00,140 | INFO     | -- intersect: -8400709105.399712
[2024-05-12 21:18:16] 2024-05-12 19:18:00,140 | INFO     | intersect: -8400709105.399712
[2024-05-12 21:18:16] 2024-05-12 19:18:00,141 | INFO     | chi2: 12.245273188935268
[2024-05-12 21:18:16] 2024-05-12 19:18:00,141 | INFO     | current chi2=12.245273188935268 (change=20.59341519732963 %)
[2024-05-12 21:18:16] 2024-05-12 19:18:00,141 | INFO     | left removable region: 10
[2024-05-12 21:18:16] 2024-05-12 19:18:00,142 | INFO     | model: linear, x: [1715479706.0, 1715479767.0, 1715479828.0, 1715479889.0, 1715479950.0, 1715480011.0, 1715480072.0, 1715480133.0, 1715480194.0, 1715480255.0, 1715
[2024-05-12 21:18:16] 2024-05-12 19:18:00,142 | INFO     | sum of square deviations: 316640459688.0
[2024-05-12 21:18:16] 2024-05-12 19:18:00,157 | INFO     | sum of deviations: 1707057325276.0
[2024-05-12 21:18:16] 2024-05-12 19:18:00,157 | INFO     | mean x: 1715510389.0
[2024-05-12 21:18:16] 2024-05-12 19:18:00,157 | INFO     | mean y: 2799514.504468719
[2024-05-12 21:18:16] 2024-05-12 19:18:00,157 | INFO     | -- intersect: -9245780338.541119
[2024-05-12 21:18:16] 2024-05-12 19:18:00,157 | INFO     | intersect: -9245780338.541119
[2024-05-12 21:18:16] 2024-05-12 19:18:00,158 | INFO     | chi2: 6.416660147559842
[2024-05-12 21:18:16] 2024-05-12 19:18:00,158 | INFO     | -- intersect: -9245780338.541119
[2024-05-12 21:18:16] 2024-05-12 19:18:00,158 | INFO     | current memory leak: 5.39 B/s (using 1007 data points, chi2=6.42)
[2024-05-12 21:18:16] 2024-05-12 19:18:00,159 | INFO     | ..............................
[2024-05-12 21:18:16] 2024-05-12 19:18:00,159 | INFO     | . Timing measurements:
[2024-05-12 21:18:16] 2024-05-12 19:18:00,159 | INFO     | . get job = 0 s
[2024-05-12 21:18:16] 2024-05-12 19:18:00,159 | INFO     | . initial setup = 1 s
[2024-05-12 21:18:16] 2024-05-12 19:18:00,160 | INFO     | . payload setup = 7 s
[2024-05-12 21:18:16] 2024-05-12 19:18:00,160 | INFO     | . stage-in = 0 s
[2024-05-12 21:18:16] 2024-05-12 19:18:00,160 | INFO     | . payload execution = 62373 s
[2024-05-12 21:18:16] 2024-05-12 19:18:00,160 | INFO     | . stage-out = 2 s
[2024-05-12 21:18:16] 2024-05-12 19:18:00,160 | INFO     | . log creation = 0 s
[2024-05-12 21:18:16] 2024-05-12 19:18:00,160 | INFO     | ..............................
[2024-05-12 21:18:16] 2024-05-12 19:18:00,286 | INFO     | 
[2024-05-12 21:18:16] 2024-05-12 19:18:00,286 | INFO     | job summary report
[2024-05-12 21:18:16] 2024-05-12 19:18:00,286 | INFO     | --------------------------------------------------
[2024-05-12 21:18:16] 2024-05-12 19:18:00,286 | INFO     | PanDA job id: 6199903445
[2024-05-12 21:18:16] 2024-05-12 19:18:00,286 | INFO     | task id: 38734053
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | errors: (none)
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | pilot state: finished 
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | transexitcode: 0
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | exeerrorcode: 0
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | exeerrordiag: 
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | exitcode: 0
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | exitmsg: OK
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | cpuconsumptiontime: 243198 s
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | nevents: 1950
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | neventsw: 0
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | pid: 3511798
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | pgrp: 3511798
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | corecount: 4
[2024-05-12 21:18:16] 2024-05-12 19:18:00,287 | INFO     | event service: False
[2024-05-12 21:18:16] 2024-05-12 19:18:00,288 | INFO     | sizes: {0: 2386087, 3: 2386293, 11: 2386321, 62383: 2460149, 62387: 2469131, 62388: 2469187, 62393: 2469537}
[2024-05-12 21:18:16] 2024-05-12 19:18:00,288 | INFO     | --------------------------------------------------
[2024-05-12 21:18:16] 2024-05-12 19:18:00,288 | INFO     | 
[2024-05-12 21:18:16] 2024-05-12 19:18:00,288 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/1
[2024-05-12 21:18:16] 2024-05-12 19:18:00,306 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,306 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,307 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,307 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,307 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,307 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,307 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,307 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,307 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,307 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,307 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,307 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,308 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,308 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,308 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,308 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,308 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,308 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-12 21:18:16] 2024-05-12 19:18:00,308 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,308 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-12 21:18:16] 2024-05-12 19:18:00,308 | INFO     | job 6199903445 has completed (purged errors)
[2024-05-12 21:18:16] 2024-05-12 19:18:00,309 | INFO     | overall cleanup function is called
[2024-05-12 21:18:16] 2024-05-12 19:18:01,322 | INFO     | --- collectZombieJob: --- 10, [3511798]
[2024-05-12 21:18:16] 2024-05-12 19:18:01,322 | INFO     | zombie collector waiting for pid 3511798
[2024-05-12 21:18:16] 2024-05-12 19:18:01,322 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-12 21:18:16] 2024-05-12 19:18:02,328 | INFO     | collected zombie processes
[2024-05-12 21:18:16] 2024-05-12 19:18:02,328 | INFO     | will now attempt to kill all subprocesses of pid=3511798
[2024-05-12 21:18:16] 2024-05-12 19:18:02,443 | INFO     | process IDs to be killed: [3511798] (in reverse order)
[2024-05-12 21:18:16] 2024-05-12 19:18:02,520 | WARNING  | found no corresponding commands to process id(s)
[2024-05-12 21:18:16] 2024-05-12 19:18:02,520 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-12 21:18:16] 2024-05-12 19:18:02,525 | INFO     | did not find any defunct processes belonging to 3511798
[2024-05-12 21:18:16] 2024-05-12 19:18:02,530 | INFO     | did not find any defunct processes belonging to 3511798
[2024-05-12 21:18:16] 2024-05-12 19:18:02,530 | INFO     | ready for new job
[2024-05-12 21:18:16] 2024-05-12 19:18:02,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-12 21:18:16] 2024-05-12 19:18:02,535 | INFO     | *************************************
[2024-05-12 21:18:16] 2024-05-12 19:18:02,535 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-12 21:18:16] 2024-05-12 19:18:02,535 | INFO     | *************************************
[2024-05-12 21:18:16] 2024-05-12 19:18:02,535 | INFO     | 
[2024-05-12 21:18:16] 2024-05-12 19:18:02,537 | INFO     | architecture information:
[2024-05-12 21:18:16] 2024-05-12 19:18:02,538 | INFO     | executing command: cat /etc/os-release
[2024-05-12 21:18:16] 2024-05-12 19:18:02,550 | INFO     | cat /etc/os-release:
[2024-05-12 21:18:16] NAME="CentOS Linux"
[2024-05-12 21:18:16] VERSION="7 (Core)"
[2024-05-12 21:18:16] ID="centos"
[2024-05-12 21:18:16] ID_LIKE="rhel fedora"
[2024-05-12 21:18:16] VERSION_ID="7"
[2024-05-12 21:18:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-12 21:18:16] ANSI_COLOR="0;31"
[2024-05-12 21:18:16] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-12 21:18:16] HOME_URL="https://www.centos.org/"
[2024-05-12 21:18:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-12 21:18:16] 
[2024-05-12 21:18:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-12 21:18:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-12 21:18:16] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-12 21:18:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-12 21:18:16] 
[2024-05-12 21:18:16] 2024-05-12 19:18:02,550 | INFO     | *************************************
[2024-05-12 21:18:16] 2024-05-12 19:18:03,054 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/1
[2024-05-12 21:18:16] 2024-05-12 19:18:03,074 | INFO     | sufficient remaining disk space (1684275200000 B)
[2024-05-12 21:18:16] 2024-05-12 19:18:03,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-12 21:18:16] 2024-05-12 19:18:03,075 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-12 21:18:16] 2024-05-12 19:18:03,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-12 21:18:16] 2024-05-12 19:18:03,075 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-12 21:18:16] 2024-05-12 19:18:03,075 | INFO     | aborting loop
[2024-05-12 21:18:16] 2024-05-12 19:18:03,708 | INFO     | all payload control threads have been joined
[2024-05-12 21:18:16] 2024-05-12 19:18:03,822 | INFO     | found 0 job(s) in 20 queues
[2024-05-12 21:18:16] 2024-05-12 19:18:03,822 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-12 21:18:16] 2024-05-12 19:18:03,822 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-12 21:18:16] 2024-05-12 19:18:04,080 | INFO     | [job] retrieve thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:04,081 | INFO     | [job] job monitor thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:04,133 | INFO     | [payload] validate_pre thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:04,134 | INFO     | [job] create_data_payload thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:04,172 | INFO     | all data control threads have been joined
[2024-05-12 21:18:16] 2024-05-12 19:18:04,412 | INFO     | all job control threads have been joined
[2024-05-12 21:18:16] 2024-05-12 19:18:04,440 | INFO     | [payload] execute_payloads thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:04,631 | INFO     | [job] validate thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:04,713 | INFO     | [payload] control thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:05,079 | INFO     | [data] copytool_out thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:05,095 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:05,178 | INFO     | [data] control thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:05,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-12 21:18:16] 2024-05-12 19:18:05,418 | INFO     | [job] control thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:05,435 | INFO     | [payload] validate_post thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:05,557 | INFO     | [data] copytool_in thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:05,662 | INFO     | [payload] failed_post thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:05,708 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-12 21:18:16] 2024-05-12 19:18:06,234 | INFO     | [job] queue monitor thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:09,714 | INFO     | [data] queue_monitor thread has finished
[2024-05-12 21:18:16] 2024-05-12 19:18:10,588 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47865604092992)>', '<ExcThread(monitor, started 47865775343360)>']
[2024-05-12 21:18:16] 2024-05-12 19:18:10,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-12 21:18:16] 2024-05-12 19:18:10,851 | INFO     | [monitor] control thread has ended
[2024-05-12 21:18:16] 2024-05-12 19:18:15,610 | INFO     | all workflow threads have been joined
[2024-05-12 21:18:16] 2024-05-12 19:18:15,611 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-12 21:18:16] 2024-05-12 19:18:15,611 | INFO     | traces error code: 0
[2024-05-12 21:18:16] 2024-05-12 19:18:15,611 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-12 21:18:16] 2024-05-12 19:18:15,694 [wrapper] ==== pilot stdout END ====
[2024-05-12 21:18:16] 2024-05-12 19:18:15,698 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-12 21:18:16] 2024-05-12 19:18:15,701 [wrapper] pilotpid: 3504125
[2024-05-12 21:18:16] 2024-05-12 19:18:15,704 [wrapper] Pilot exit status: 0
[2024-05-12 21:18:16] 2024-05-12 19:18:15,713 [wrapper] pandaids: 6199903445
[2024-05-12 21:18:16] 2024-05-12 19:18:15,764 [wrapper] cleanup: SIGTERM to supervisor_pilot  608996 3504126
[2024-05-12 21:18:16] 2024-05-12 19:18:15,766 [wrapper] Test setup, not cleaning
[2024-05-12 21:18:16] 2024-05-12 19:18:15,769 [wrapper] ==== wrapper stdout END ====
[2024-05-12 21:18:16] 2024-05-12 19:18:15,771 [wrapper] ==== wrapper stderr END ====
[2024-05-12 21:18:16] 2024-05-12 19:18:15,776 [wrapper] apfmon messages muted
[2024-05-12 21:18:16]  *** Error codes and diagnostics ***
[2024-05-12 21:18:16]     "exeErrorCode": 0,
[2024-05-12 21:18:16]     "exeErrorDiag": "",
[2024-05-12 21:18:16]     "pilotErrorCode": 0,
[2024-05-12 21:18:16]     "pilotErrorDiag": "",
[2024-05-12 21:18:16]  *** Listing of results directory ***
[2024-05-12 21:18:16] total 1510136
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc     467845 May  9 11:28 pilot3.tar.gz
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc       5633 May  9 11:52 queuedata.json
[2024-05-12 21:18:16] -rwx------ 1 boinc boinc      32251 May  9 11:52 runpilot2-wrapper.sh
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc        100 May 12 03:57 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-12 21:18:16] -rwxr-xr-x 1 boinc boinc       7986 May 12 03:57 run_atlas
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc        105 May 12 03:57 job.xml
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc       6455 May 12 03:57 init_data.xml
[2024-05-12 21:18:16] -rw-r--r-- 2 boinc boinc  326548503 May 12 03:57 EVNT.38734051._000368.pool.root.1
[2024-05-12 21:18:16] -rw-r--r-- 2 boinc boinc      17537 May 12 03:57 start_atlas.sh
[2024-05-12 21:18:16] drwxrwx--x 2 boinc boinc       4096 May 12 03:57 shared
[2024-05-12 21:18:16] -rw-r--r-- 2 boinc boinc     480169 May 12 03:57 input.tar.gz
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc          0 May 12 03:57 boinc_lockfile
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc       2850 May 12 03:57 pandaJob.out
[2024-05-12 21:18:16] -rw------- 1 boinc boinc        424 May 12 03:57 setup.sh.local
[2024-05-12 21:18:16] -rw------- 1 boinc boinc    1002363 May 12 03:57 agis_schedconf.cvmfs.json
[2024-05-12 21:18:16] -rw------- 1 boinc boinc    1319809 May 12 03:57 cric_ddmendpoints.json
[2024-05-12 21:18:16] drwx------ 4 boinc boinc       4096 May 12 03:57 pilot3
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc        533 May 12 21:08 boinc_task_state.xml
[2024-05-12 21:18:16] -rw------- 1 boinc boinc         95 May 12 21:17 pilot_heartbeat.json
[2024-05-12 21:18:16] -rw------- 1 boinc boinc 1191337813 May 12 21:17 HITS.38734053._003649.pool.root.1
[2024-05-12 21:18:16] -rw------- 1 boinc boinc       1059 May 12 21:17 memory_monitor_summary.json
[2024-05-12 21:18:16] -rw------- 1 boinc boinc          0 May 12 21:17 agis_ddmendpoints.agis.ALL.json
[2024-05-12 21:18:16] -rw------- 1 boinc boinc    1944885 May 12 21:17 log.38734053._003649.job.log.tgz.1
[2024-05-12 21:18:16] -rw------- 1 boinc boinc      27925 May 12 21:18 heartbeat.json
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc         29 May 12 21:18 wrapper_checkpoint.txt
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc       8192 May 12 21:18 boinc_mmap_file
[2024-05-12 21:18:16] -rw------- 1 boinc boinc       4222 May 12 21:18 pilotlog.txt
[2024-05-12 21:18:16] -rw------- 1 boinc boinc   10525609 May 12 21:18 log.38734053._003649.job.log.1
[2024-05-12 21:18:16] -rw------- 1 boinc boinc        353 May 12 21:18 output.list
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc        620 May 12 21:18 runtime_log
[2024-05-12 21:18:16] -rw------- 1 boinc boinc   12513280 May 12 21:18 result.tar.gz
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc      11410 May 12 21:18 runtime_log.err
[2024-05-12 21:18:16] -rw------- 1 boinc boinc        665 May 12 21:18 OmRMDmKdFP5nsSi4apGgGQJmABFKDmABFKDm4ySLDmckIKDmnKZFSo.diag
[2024-05-12 21:18:16] -rw-r--r-- 1 boinc boinc      21686 May 12 21:18 stderr.txt
[2024-05-12 21:18:16] HITS file was successfully produced:
[2024-05-12 21:18:16] -rw------- 1 boinc boinc 1191337813 May 12 21:17 shared/HITS.pool.root.1
[2024-05-12 21:18:16]  *** Contents of shared directory: ***
[2024-05-12 21:18:16] total 1495032
[2024-05-12 21:18:16] -rw-r--r-- 2 boinc boinc  326548503 May 12 03:57 ATLAS.root_0
[2024-05-12 21:18:16] -rw-r--r-- 2 boinc boinc      17537 May 12 03:57 start_atlas.sh
[2024-05-12 21:18:16] -rw-r--r-- 2 boinc boinc     480169 May 12 03:57 input.tar.gz
[2024-05-12 21:18:16] -rw------- 1 boinc boinc 1191337813 May 12 21:17 HITS.pool.root.1
[2024-05-12 21:18:16] -rw------- 1 boinc boinc   12513280 May 12 21:18 result.tar.gz
21:18:18 (3492679): run_atlas exited; CPU time 241686.626458
21:18:18 (3492679): called boinc_finish(0)

</stderr_txt>
]]>

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