Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:07:02 (3362482): wrapper (7.7.26015): starting
17:07:02 (3362482): wrapper: running run_atlas (--nthreads 4)
[2024-05-14 17:07:02] Arguments: --nthreads 4
[2024-05-14 17:07:02] Threads: 4
[2024-05-14 17:07:02] Checking for CVMFS
[2024-05-14 17:07:02] No cvmfs_config command found, will try listing directly
[2024-05-14 17:07:02] CVMFS is ok
[2024-05-14 17:07:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-14 17:07:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-14 17:07:02] Further information can be found at the LHC@home message board.
[2024-05-14 17:07:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-14 17:07:02] Checking for apptainer binary...
[2024-05-14 17:07:02] which: no apptainer in ((null))
[2024-05-14 17:07:02] apptainer is not installed, using version from CVMFS
[2024-05-14 17:07:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-14 17:07:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot92/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-05-14 17:07:03] apptainer works
[2024-05-14 17:07:03] Set ATHENA_PROC_NUMBER=4
[2024-05-14 17:07:03] Set ATHENA_CORE_NUMBER=4
[2024-05-14 17:07:03] Starting ATLAS job with PandaID=6199854362
[2024-05-14 17:07:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot92/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 12:07:21]  *** The last 200 lines of the pilot log: ***
[2024-05-15 12:07:21] 2024-05-15 10:07:00,576 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-15 12:07:21] 2024-05-15 10:07:02,790 | INFO     | job 6199854362 has state=finished
[2024-05-15 12:07:21] 2024-05-15 10:07:02,791 | INFO     | preparing for final server update for job 6199854362 in state='finished'
[2024-05-15 12:07:21] 2024-05-15 10:07:02,791 | INFO     | this job has now completed (state=finished)
[2024-05-15 12:07:21] 2024-05-15 10:07:02,791 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-15 12:07:21] 2024-05-15 10:07:02,791 | INFO     | job 6199854362 has finished - writing final server update
[2024-05-15 12:07:21] 2024-05-15 10:07:02,792 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_81033/.job.ad'
[2024-05-15 12:07:21] 2024-05-15 10:07:02,792 | INFO     | total number of processed events: 1950 (read)
[2024-05-15 12:07:21] 2024-05-15 10:07:02,799 | INFO     | executing command: lscpu
[2024-05-15 12:07:21] 2024-05-15 10:07:02,855 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-05-15 12:07:21] 2024-05-15 10:07:02,856 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-15 12:07:21] 2024-05-15 10:07:02,884 | INFO     | monitor loop #5081: job 0:6199854362 is in state 'finished'
[2024-05-15 12:07:21] 2024-05-15 10:07:02,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 12:07:21] 2024-05-15 10:07:02,896 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-15 12:07:21] 2024-05-15 10:07:05,387 | INFO     | monitor loop #5082: job 0:6199854362 is in state 'finished'
[2024-05-15 12:07:21] 2024-05-15 10:07:05,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 12:07:21] 2024-05-15 10:07:06,440 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-15 12:07:21] 2024-05-15 10:07:06,441 | INFO     | using path: /scratch/boinc/var/slot92/slots/1/PanDA_Pilot-6199854362/memory_monitor_summary.json (trf name=prmon)
[2024-05-15 12:07:21] 2024-05-15 10:07:06,441 | INFO     | extracted standard info from prmon json
[2024-05-15 12:07:21] 2024-05-15 10:07:06,441 | INFO     | extracted standard memory fields from prmon json
[2024-05-15 12:07:21] 2024-05-15 10:07:06,441 | WARNING  | GPU info not found in prmon json
[2024-05-15 12:07:21] 2024-05-15 10:07:06,457 | INFO     | fitting pss+swap vs Time
[2024-05-15 12:07:21] 2024-05-15 10:07:06,458 | INFO     | model: linear, x: [1715699280.0, 1715699341.0, 1715699402.0, 1715699463.0, 1715699524.0, 1715699585.0, 1715699646.0, 1715699707.0, 1715699768.0, 1715699829.0, 1715
[2024-05-15 12:07:21] 2024-05-15 10:07:06,459 | INFO     | sum of square deviations: 436812357520.0
[2024-05-15 12:07:21] 2024-05-15 10:07:06,479 | INFO     | sum of deviations: 2254865770979.0005
[2024-05-15 12:07:21] 2024-05-15 10:07:06,479 | INFO     | mean x: 1715733440.0
[2024-05-15 12:07:21] 2024-05-15 10:07:06,479 | INFO     | mean y: 2649622.0115967887
[2024-05-15 12:07:21] 2024-05-15 10:07:06,479 | INFO     | -- intersect: -8854125007.59104
[2024-05-15 12:07:21] 2024-05-15 10:07:06,479 | INFO     | intersect: -8854125007.59104
[2024-05-15 12:07:21] 2024-05-15 10:07:06,481 | INFO     | chi2: 16.593310118532816
[2024-05-15 12:07:21] 2024-05-15 10:07:06,482 | INFO     | model: linear, x: [1715699280.0, 1715699341.0, 1715699402.0, 1715699463.0, 1715699524.0, 1715699585.0, 1715699646.0, 1715699707.0, 1715699768.0, 1715699829.0, 1715
[2024-05-15 12:07:21] 2024-05-15 10:07:06,482 | INFO     | sum of square deviations: 430993439115.0
[2024-05-15 12:07:21] 2024-05-15 10:07:06,500 | INFO     | sum of deviations: 2606991268366.502
[2024-05-15 12:07:21] 2024-05-15 10:07:06,501 | INFO     | mean x: 1715733287.5
[2024-05-15 12:07:21] 2024-05-15 10:07:06,501 | INFO     | mean y: 2658849.226702509
[2024-05-15 12:07:21] 2024-05-15 10:07:06,501 | INFO     | -- intersect: -10375461310.89195
[2024-05-15 12:07:21] 2024-05-15 10:07:06,501 | INFO     | intersect: -10375461310.89195
[2024-05-15 12:07:21] 2024-05-15 10:07:06,502 | INFO     | chi2: 13.466423457171466
[2024-05-15 12:07:21] 2024-05-15 10:07:06,502 | INFO     | current chi2=13.466423457171466 (change=18.844260964356824 %)
[2024-05-15 12:07:21] 2024-05-15 10:07:06,502 | INFO     | right removable region: 1115
[2024-05-15 12:07:21] 2024-05-15 10:07:06,502 | INFO     | model: linear, x: [1715699585.0, 1715699646.0, 1715699707.0, 1715699768.0, 1715699829.0, 1715699890.0, 1715699951.0, 1715700012.0, 1715700073.0, 1715700134.0, 1715
[2024-05-15 12:07:21] 2024-05-15 10:07:06,503 | INFO     | sum of square deviations: 430993439115.0
[2024-05-15 12:07:21] 2024-05-15 10:07:06,516 | INFO     | sum of deviations: 1889119910886.9998
[2024-05-15 12:07:21] 2024-05-15 10:07:06,516 | INFO     | mean x: 1715733592.5
[2024-05-15 12:07:21] 2024-05-15 10:07:06,516 | INFO     | mean y: 2659203.795698925
[2024-05-15 12:07:21] 2024-05-15 10:07:06,516 | INFO     | -- intersect: -7517702354.433475
[2024-05-15 12:07:21] 2024-05-15 10:07:06,516 | INFO     | intersect: -7517702354.433475
[2024-05-15 12:07:21] 2024-05-15 10:07:06,517 | INFO     | chi2: 13.163598299798432
[2024-05-15 12:07:21] 2024-05-15 10:07:06,517 | INFO     | current chi2=13.163598299798432 (change=20.669244377610898 %)
[2024-05-15 12:07:21] 2024-05-15 10:07:06,517 | INFO     | left removable region: 10
[2024-05-15 12:07:21] 2024-05-15 10:07:06,517 | INFO     | model: linear, x: [1715699890.0, 1715699951.0, 1715700012.0, 1715700073.0, 1715700134.0, 1715700195.0, 1715700256.0, 1715700317.0, 1715700378.0, 1715700439.0, 1715
[2024-05-15 12:07:21] 2024-05-15 10:07:06,518 | INFO     | sum of square deviations: 418374207160.0
[2024-05-15 12:07:21] 2024-05-15 10:07:06,531 | INFO     | sum of deviations: 2002682082532.0
[2024-05-15 12:07:21] 2024-05-15 10:07:06,531 | INFO     | mean x: 1715733562.0
[2024-05-15 12:07:21] 2024-05-15 10:07:06,531 | INFO     | mean y: 2678712.2009049775
[2024-05-15 12:07:21] 2024-05-15 10:07:06,531 | INFO     | -- intersect: -8210229263.988318
[2024-05-15 12:07:21] 2024-05-15 10:07:06,531 | INFO     | intersect: -8210229263.988318
[2024-05-15 12:07:21] 2024-05-15 10:07:06,532 | INFO     | chi2: 7.026369364923765
[2024-05-15 12:07:21] 2024-05-15 10:07:06,532 | INFO     | -- intersect: -8210229263.988318
[2024-05-15 12:07:21] 2024-05-15 10:07:06,532 | INFO     | current memory leak: 4.79 B/s (using 1105 data points, chi2=7.03)
[2024-05-15 12:07:21] 2024-05-15 10:07:06,533 | INFO     | ..............................
[2024-05-15 12:07:21] 2024-05-15 10:07:06,533 | INFO     | . Timing measurements:
[2024-05-15 12:07:21] 2024-05-15 10:07:06,533 | INFO     | . get job = 0 s
[2024-05-15 12:07:21] 2024-05-15 10:07:06,533 | INFO     | . initial setup = 1 s
[2024-05-15 12:07:21] 2024-05-15 10:07:06,533 | INFO     | . payload setup = 14 s
[2024-05-15 12:07:21] 2024-05-15 10:07:06,533 | INFO     | . stage-in = 0 s
[2024-05-15 12:07:21] 2024-05-15 10:07:06,533 | INFO     | . payload execution = 68340 s
[2024-05-15 12:07:21] 2024-05-15 10:07:06,533 | INFO     | . stage-out = 2 s
[2024-05-15 12:07:21] 2024-05-15 10:07:06,533 | INFO     | . log creation = 0 s
[2024-05-15 12:07:21] 2024-05-15 10:07:06,533 | INFO     | ..............................
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | 
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | job summary report
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | --------------------------------------------------
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | PanDA job id: 6199854362
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | task id: 38734053
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | errors: (none)
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | pilot state: finished 
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | transexitcode: 0
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | exeerrorcode: 0
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | exeerrordiag: 
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | exitcode: 0
[2024-05-15 12:07:21] 2024-05-15 10:07:06,593 | INFO     | exitmsg: OK
[2024-05-15 12:07:21] 2024-05-15 10:07:06,594 | INFO     | cpuconsumptiontime: 266660 s
[2024-05-15 12:07:21] 2024-05-15 10:07:06,594 | INFO     | nevents: 1950
[2024-05-15 12:07:21] 2024-05-15 10:07:06,594 | INFO     | neventsw: 0
[2024-05-15 12:07:21] 2024-05-15 10:07:06,594 | INFO     | pid: 3377938
[2024-05-15 12:07:21] 2024-05-15 10:07:06,594 | INFO     | pgrp: 3377938
[2024-05-15 12:07:21] 2024-05-15 10:07:06,594 | INFO     | corecount: 4
[2024-05-15 12:07:21] 2024-05-15 10:07:06,594 | INFO     | event service: False
[2024-05-15 12:07:21] 2024-05-15 10:07:06,594 | INFO     | sizes: {0: 2387490, 1: 2388425, 7: 2388663, 12: 2388691, 68358: 2463848, 68361: 2471718, 68362: 2471902, 68368: 2472124}
[2024-05-15 12:07:21] 2024-05-15 10:07:06,594 | INFO     | --------------------------------------------------
[2024-05-15 12:07:21] 2024-05-15 10:07:06,594 | INFO     | 
[2024-05-15 12:07:21] 2024-05-15 10:07:06,594 | INFO     | executing command: ls -lF /scratch/boinc/var/slot92/slots/1
[2024-05-15 12:07:21] 2024-05-15 10:07:06,614 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,614 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,614 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,614 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,614 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,614 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,614 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,614 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,614 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | job 6199854362 has completed (purged errors)
[2024-05-15 12:07:21] 2024-05-15 10:07:06,615 | INFO     | overall cleanup function is called
[2024-05-15 12:07:21] 2024-05-15 10:07:07,626 | INFO     | --- collectZombieJob: --- 10, [3377938]
[2024-05-15 12:07:21] 2024-05-15 10:07:07,626 | INFO     | zombie collector waiting for pid 3377938
[2024-05-15 12:07:21] 2024-05-15 10:07:07,626 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 12:07:21] 2024-05-15 10:07:08,631 | INFO     | collected zombie processes
[2024-05-15 12:07:21] 2024-05-15 10:07:08,631 | INFO     | will now attempt to kill all subprocesses of pid=3377938
[2024-05-15 12:07:21] 2024-05-15 10:07:08,810 | INFO     | process IDs to be killed: [3377938] (in reverse order)
[2024-05-15 12:07:21] 2024-05-15 10:07:08,979 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 12:07:21] 2024-05-15 10:07:08,980 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 12:07:21] 2024-05-15 10:07:08,999 | INFO     | did not find any defunct processes belonging to 3377938
[2024-05-15 12:07:21] 2024-05-15 10:07:09,008 | INFO     | did not find any defunct processes belonging to 3377938
[2024-05-15 12:07:21] 2024-05-15 10:07:09,009 | INFO     | ready for new job
[2024-05-15 12:07:21] 2024-05-15 10:07:09,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 12:07:21] 2024-05-15 10:07:09,014 | INFO     | *************************************
[2024-05-15 12:07:21] 2024-05-15 10:07:09,014 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 12:07:21] 2024-05-15 10:07:09,014 | INFO     | *************************************
[2024-05-15 12:07:21] 2024-05-15 10:07:09,014 | INFO     | 
[2024-05-15 12:07:21] 2024-05-15 10:07:09,019 | INFO     | architecture information:
[2024-05-15 12:07:21] 2024-05-15 10:07:09,019 | INFO     | executing command: cat /etc/os-release
[2024-05-15 12:07:21] 2024-05-15 10:07:09,031 | INFO     | cat /etc/os-release:
[2024-05-15 12:07:21] NAME="CentOS Linux"
[2024-05-15 12:07:21] VERSION="7 (Core)"
[2024-05-15 12:07:21] ID="centos"
[2024-05-15 12:07:21] ID_LIKE="rhel fedora"
[2024-05-15 12:07:21] VERSION_ID="7"
[2024-05-15 12:07:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 12:07:21] ANSI_COLOR="0;31"
[2024-05-15 12:07:21] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 12:07:21] HOME_URL="https://www.centos.org/"
[2024-05-15 12:07:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 12:07:21] 
[2024-05-15 12:07:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 12:07:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 12:07:21] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 12:07:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 12:07:21] 
[2024-05-15 12:07:21] 2024-05-15 10:07:09,031 | INFO     | *************************************
[2024-05-15 12:07:21] 2024-05-15 10:07:09,534 | INFO     | executing command: df -mP /scratch/boinc/var/slot92/slots/1
[2024-05-15 12:07:21] 2024-05-15 10:07:09,553 | INFO     | sufficient remaining disk space (3100314173440 B)
[2024-05-15 12:07:21] 2024-05-15 10:07:09,553 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 12:07:21] 2024-05-15 10:07:09,553 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 12:07:21] 2024-05-15 10:07:09,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 12:07:21] 2024-05-15 10:07:09,553 | INFO     | aborting loop
[2024-05-15 12:07:21] 2024-05-15 10:07:09,614 | INFO     | all payload control threads have been joined
[2024-05-15 12:07:21] 2024-05-15 10:07:09,652 | INFO     | all data control threads have been joined
[2024-05-15 12:07:21] 2024-05-15 10:07:09,906 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 12:07:21] 2024-05-15 10:07:09,906 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 12:07:21] 2024-05-15 10:07:09,906 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 12:07:21] 2024-05-15 10:07:10,542 | INFO     | all job control threads have been joined
[2024-05-15 12:07:21] 2024-05-15 10:07:10,558 | INFO     | [job] retrieve thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:10,559 | INFO     | [job] job monitor thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:10,616 | INFO     | [payload] control thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:10,657 | INFO     | [data] control thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:10,754 | INFO     | [data] copytool_in thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:10,756 | INFO     | [job] validate thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:10,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 12:07:21] 2024-05-15 10:07:11,174 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 12:07:21] 2024-05-15 10:07:11,331 | INFO     | [payload] validate_post thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:11,488 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:11,548 | INFO     | [job] control thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:11,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 12:07:21] 2024-05-15 10:07:11,803 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:11,804 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:11,950 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:12,052 | INFO     | [payload] failed_post thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:12,607 | INFO     | [job] queue monitor thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:12,823 | INFO     | [data] copytool_out thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:15,180 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 12:07:21] 2024-05-15 10:07:15,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47649662366784)>', '<ExcThread(monitor, started 47649835718400)>']
[2024-05-15 12:07:21] 2024-05-15 10:07:16,937 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 12:07:21] 2024-05-15 10:07:16,937 | INFO     | [monitor] control thread has ended
[2024-05-15 12:07:21] 2024-05-15 10:07:20,996 | INFO     | all workflow threads have been joined
[2024-05-15 12:07:21] 2024-05-15 10:07:20,996 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 12:07:21] 2024-05-15 10:07:20,997 | INFO     | traces error code: 0
[2024-05-15 12:07:21] 2024-05-15 10:07:20,997 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 12:07:21] 2024-05-15 10:07:21,080 [wrapper] ==== pilot stdout END ====
[2024-05-15 12:07:21] 2024-05-15 10:07:21,083 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 12:07:21] 2024-05-15 10:07:21,085 [wrapper] pilotpid: 3369145
[2024-05-15 12:07:21] 2024-05-15 10:07:21,086 [wrapper] Pilot exit status: 0
[2024-05-15 12:07:21] 2024-05-15 10:07:21,096 [wrapper] pandaids: 6199854362
[2024-05-15 12:07:21] 2024-05-15 10:07:21,184 [wrapper] cleanup: SIGTERM to supervisor_pilot 1796625 3369146
[2024-05-15 12:07:21] 2024-05-15 10:07:21,187 [wrapper] Test setup, not cleaning
[2024-05-15 12:07:21] 2024-05-15 10:07:21,189 [wrapper] ==== wrapper stdout END ====
[2024-05-15 12:07:21] 2024-05-15 10:07:21,191 [wrapper] ==== wrapper stderr END ====
[2024-05-15 12:07:21] 2024-05-15 10:07:21,195 [wrapper] apfmon messages muted
[2024-05-15 12:07:21]  *** Error codes and diagnostics ***
[2024-05-15 12:07:21]     "exeErrorCode": 0,
[2024-05-15 12:07:21]     "exeErrorDiag": "",
[2024-05-15 12:07:21]     "pilotErrorCode": 0,
[2024-05-15 12:07:21]     "pilotErrorDiag": "",
[2024-05-15 12:07:21]  *** Listing of results directory ***
[2024-05-15 12:07:21] total 1816876
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc     467845 May  9 10:28 pilot3.tar.gz
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc       5633 May  9 10:46 queuedata.json
[2024-05-15 12:07:21] -rwx------ 1 boinc boinc      32251 May  9 10:46 runpilot2-wrapper.sh
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc        100 May 14 17:06 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 12:07:21] -rwxr-xr-x 1 boinc boinc       7986 May 14 17:06 run_atlas
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc        105 May 14 17:06 job.xml
[2024-05-15 12:07:21] -rw-r--r-- 2 boinc boinc  328777573 May 14 17:07 EVNT.38734051._000861.pool.root.1
[2024-05-15 12:07:21] -rw-r--r-- 2 boinc boinc      17587 May 14 17:07 start_atlas.sh
[2024-05-15 12:07:21] drwxrwx--x 2 boinc boinc       4096 May 14 17:07 shared
[2024-05-15 12:07:21] -rw-r--r-- 2 boinc boinc     480249 May 14 17:07 input.tar.gz
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc       6642 May 14 17:07 init_data.xml
[2024-05-15 12:07:21] -rw-r--r-- 2 boinc boinc  329233496 May 14 17:07 EVNT.38734051._000862.pool.root.1
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc          0 May 14 17:07 boinc_lockfile
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc       3367 May 14 17:07 pandaJob.out
[2024-05-15 12:07:21] -rw------- 1 boinc boinc        424 May 14 17:07 setup.sh.local
[2024-05-15 12:07:21] -rw------- 1 boinc boinc    1008542 May 14 17:07 agis_schedconf.cvmfs.json
[2024-05-15 12:07:21] -rw------- 1 boinc boinc    1319809 May 14 17:07 cric_ddmendpoints.json
[2024-05-15 12:07:21] drwx------ 4 boinc boinc       4096 May 14 17:07 pilot3
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc        533 May 15 11:58 boinc_task_state.xml
[2024-05-15 12:07:21] -rw------- 1 boinc boinc         95 May 15 12:06 pilot_heartbeat.json
[2024-05-15 12:07:21] -rw------- 1 boinc boinc 1171579747 May 15 12:06 HITS.38734053._003542.pool.root.1
[2024-05-15 12:07:21] -rw------- 1 boinc boinc       1053 May 15 12:06 memory_monitor_summary.json
[2024-05-15 12:07:21] -rw------- 1 boinc boinc          0 May 15 12:06 agis_ddmendpoints.agis.ALL.json
[2024-05-15 12:07:21] -rw------- 1 boinc boinc    2022866 May 15 12:07 log.38734053._003542.job.log.tgz.1
[2024-05-15 12:07:21] -rw------- 1 boinc boinc      27894 May 15 12:07 heartbeat.json
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc       8192 May 15 12:07 boinc_mmap_file
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc         29 May 15 12:07 wrapper_checkpoint.txt
[2024-05-15 12:07:21] -rw------- 1 boinc boinc       4222 May 15 12:07 pilotlog.txt
[2024-05-15 12:07:21] -rw------- 1 boinc boinc   11640076 May 15 12:07 log.38734053._003542.job.log.1
[2024-05-15 12:07:21] -rw------- 1 boinc boinc        353 May 15 12:07 output.list
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc        620 May 15 12:07 runtime_log
[2024-05-15 12:07:21] -rw------- 1 boinc boinc   13701120 May 15 12:07 result.tar.gz
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc      11462 May 15 12:07 runtime_log.err
[2024-05-15 12:07:21] -rw------- 1 boinc boinc        666 May 15 12:07 XCnMDmVbEP5nsSi4apGgGQJmABFKDmABFKDm4ySLDm4jIKDmbcD2ln.diag
[2024-05-15 12:07:21] -rw-r--r-- 1 boinc boinc      21697 May 15 12:07 stderr.txt
[2024-05-15 12:07:21] HITS file was successfully produced:
[2024-05-15 12:07:21] -rw------- 1 boinc boinc 1171579747 May 15 12:06 shared/HITS.pool.root.1
[2024-05-15 12:07:21]  *** Contents of shared directory: ***
[2024-05-15 12:07:21] total 1800600
[2024-05-15 12:07:21] -rw-r--r-- 2 boinc boinc  328777573 May 14 17:07 ATLAS.root_0
[2024-05-15 12:07:21] -rw-r--r-- 2 boinc boinc      17587 May 14 17:07 start_atlas.sh
[2024-05-15 12:07:21] -rw-r--r-- 2 boinc boinc     480249 May 14 17:07 input.tar.gz
[2024-05-15 12:07:21] -rw-r--r-- 2 boinc boinc  329233496 May 14 17:07 ATLAS.root_1
[2024-05-15 12:07:21] -rw------- 1 boinc boinc 1171579747 May 15 12:06 HITS.pool.root.1
[2024-05-15 12:07:21] -rw------- 1 boinc boinc   13701120 May 15 12:07 result.tar.gz
12:07:23 (3362482): run_atlas exited; CPU time 264580.257856
12:07:23 (3362482): called boinc_finish(0)

</stderr_txt>
]]>

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